XLOC_030575 (gene) - C. hemisphaerica

Overview
NameXLOC_030575
Unique NameXLOC_030575
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_14:797605..805397-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030575 ID=XLOC_030575|Name=XLOC_030575|organism=Clytia hemisphaerica|type=gene|length=7793bp|location=Sequence derived from alignment at scaffold_14:797605..805397- (Clytia hemisphaerica)
CCAATTTCTAACATGTATATACAGATTCAATCTCGAAAATGCAACTTTGC
TGCTGGCGTGCCACTACCATTACGCTACTACGGCTACCATTTTTTTAGCT
TCTAGAACGCTAAGCGGAGAGAGGCTAAAATAGGATACTTGGTCAGTCGC
ACGCAAATACAATTGATGAAAGTGAATTATAGACGTGTCTAAGTGAGAGT
GACCAAGTTACACCATATTCCCGCGTGACTGCACGGAGTTCCTTCCTTTT
GTAATTGAGCAGCTCTTGTCTTGTCGTCAATGTTCTCTTCGATTTAATTG
TCAACTTTTAATTGTCTTTTGTCATTATTGTTATATTATTGAATACAACA
TGCCATCATCAACGGAATTTCCATCTGCCTGGTAAGCATTATATTATATT
TTGATTTCGAAAGTGATTTCTACGAACTGACTGATTGCTGTAGAGTATAG
ACATTAAACAGTTAAAGCCTGGCTAACATTAAAGTAGAATAAAATAGCGA
ATGAAACACAACATAAACATTGCCTGGGTCTACACTCATTTGTGTATGTG
CTCCCTATTCTAGGCTGCCTTGAGACCTGGCATGTAACCTTGTGTTTCCT
GAGCATAGATAGACCAAATCAGTTATGTTGTCTATTGTTTTGATATGATG
ATGGCAATTAGAATATCTGGGTCTACACTTCTTTGTGTATGTGCTGCTTT
TTTCAAGTGAGCCTTAAGACCTGATATCTATTTTGACATTACATATGGTG
ACAAAAGAAGTTTACTTCCCTAAACAGCTAAATCTTGGTAATCTCTCAGA
ACTTCTCGTCCAGTTCACAATTCTTATTCAATAGATAGAAATTTGATTAA
AGACATATTTTTTGCATGTAGGGTAAATAGTCCACCTATGAGAGAGGAAG
AATAAAATTATTAGGTGGTCCATAGCGTAAGGTCTCTTGGGTCACGATGC
TTTCTATAGACTTTATTTATTTTTAGTGGCAAAAAGTCCAGTACTCCAAA
TGCAGGAAAACAACGCTTTAAGCGCCAACTTAATTCATCAGCAACATCAA
CGTCCTCAGCATCTGCTTGCTTGGAGGCTAAAAAGTCCAGGTCTGCAACG
TCTGCGTCTGCTTGCTTGGAGGCTAAGAAATCCAGGTAAGAAAATTCCTT
TATTAATATGTGATAAACTTTTGTGGGGATATTATCTTGTGGGCTTAAAA
TTTAGTTCCCCATTTGAAGAAGCCTTACCATGGCAAAATAGTTTTTAATA
AAATGCCCAAATTATGTGAAATAACAAAGCCCTTCACAAAATTAAGTCCC
TGAAAAATCTTGTGGATGAACTTTCAGCTTTTCAGTTCTAAAGAAGGAAA
GGGATTTGAAAGCTAACCCATGAAATTGCTCTACTGCGCGTACTCTTAAT
AATCGGATTTTAGTCTATTTTTCCTCTATTTTCAGTTTTTTAACCCTTAG
CAATTAGGTTTTCCAATGTTTATTGGAATTTGAAATCTTTTTAATCCTGC
ATTTATTTATACCAGGAACCTGAAGTAGAATTAGTATATGTAATCACATG
ATAACGAGTGCAATTCGAGAATAATTGCATGAGTGATTTTTTTGTAATTA
ATTTTCCGAGTCCGAAAGGACGAGGAAAATTCGAAACAAAAAAATCACGA
GTGCAATTTTCGAATTGTACGAGTTATCATGTGATTACGAGCTAATCGCA
CAATCGGTTTCACTGCTTTTTCCCTGTCAAGAAAATAAATTACACTGAAA
GTTTTATATTTTTGATATTTTTCTCTTCTCTTTATGTTTTTCTCTTTATT
GTTGTTTATAGATTTTCTTTCTCACAAAATTAATTTCGAATGCAATTAGA
ACGTTCGATAAAAAAATGTAAGAAAAAACATTAAAATCAATTTTGTAAAC
ATTGGTCCGTCACTGAAGAGTGTGATTAACGATTAATTGCTCTCTACAGG
ATGCAATTAACGATTAATTGCTCTCTTTGAAGGGGCGCCAAATGAGAAAA
AATAACTAATCGTGCGATTACTGTTAAAAACTGTTACTTATGTCTTTTAG
ANAAATAACTAATCGTGCGATTAGGTGTCTTATTTTATGAATAATAAATT
TTTTCTAGATCACGTGAAGATCCAATGCATATGTTAAGCAATTCATTTAA
TGGATTTAGTGGTGACGAAGACTCGGACATTGGAAACCAATCATTGGACA
AGACCCCACGGTAATTTATTATGTTTTCATTTCCCCTTATTAAACAGTAG
CATCAAAGCAGTTATGGTGTAAAATTGCTTGTATAATTCAGTTGGACTGT
CAATTCTCCTTCATCAGTTCAGTGATGCAAGTTTTAAACCTTTATGACTG
TTTACTGCGGTATGAGCCAGTGAAATTTCAAGCAGCAAAACAAAGTTCCC
ATTGCAATATTATGTTGAGTATTATGAGTATTTTTAAAATTCCATATTTG
TTTAGTATGTTATAAGATATTATTTTAAATTTGCAGTATCCATGAAAACA
CTCAACTACGCAACCGAGGACTAAACACCCCAAGCAACAATTGCATTGTT
TCATCAGATGTTGTCACACCTACGGGCAGCAATGTCAATGAAGGTGAACT
TTACAGGTAGGTTTTAATTTTATCTAATATTTAATTGAAATCTTCTTTTG
AACTATTCAGATTTTTTGACCTAGAATTAAAAGGTTTGCTTCTAAAACAA
ACAAAAATGAAAAAAATGGTTTTTAATTTTCACCGATGTCCCTTTAAATG
TAAGTTGACATGAAGAACAAATAACATTTAGATTACCTGGGCAGTGGTTG
GTCTGATATATTTTTATTGGAAAAAAAGAATGTCCATTTTTTCTAAACTC
AGGAAGAAGAAAACATTTAAAAATGCAATAAAGAATTTGAAGAAAAAACA
AAGAAAACAGTTATGGAAGGCCCACCAAACCTATGATGAAAATCTAACTA
AAGAACAGGAAAAAGTTCAATGCCTGGAAGATGTTGTAGAATCAACAAAG
AAAAATTATAATGAAAAGTTAAATGAAGAAAAGGAGAAGGTTCAATGTCT
GGAGGATGTTGTAGAATCGACAAAGAAAAATTTTCAACTTCTTGCAAAGC
ACAGTTTAAGATATAACAATATAACATCTACTAAAGAATATAAAACATGC
ATTGCCACTGGTTTATGCCAAACAACAAAACCTAAAGTAGCCAAACATAA
TAGAAGCAAAAAGACTTCAGATTTACTATCAGAGATACCCATCTTTCACG
AAGAAGATGTTATTGAAATTGAAAATGGTACAATAGGCAATGGTCAATTT
GGAAATGTGAAAGCTTTTAGATTAAAAAGGCTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAAAAATACAATACGTATCATCGTCACATTG
CATATGAACTGAGAAACATACCAGGATCAAAACAAAGCGTTCAAACCGAT
ATATTTTCTCTTGGACACATGCTTAAACATCTGCTCTTGTGCCTTGTGAC
CAAGTTGTAGAACTAGGAAGAAGTATGAAAGTAAATGAGGCAGATTTTCG
AATCCCCATTAAAAAAGCATTGACTGTGTTGATGAAAATGAAATGATATT
GCACATTTTTATTACTTTGGTATTTTACCTTCAATAGTATGATGAAATTT
TTCCTAAGCTATTTCTCTAAGGCTTAGCTGTTACAAAAACAGTGTGATCA
ATTTCTAATTTCATGGATTTGAGTCTCTAATTACACGGTTTAGGAAAAGT
TTACAATTTTATATATTTTTGGATATCAAAAGATCTTTGTCATTTTGTTG
TTTTTCATGTGTGTTTTTGTTATGGCAGTCTATTTAAATTGTTTTAATGA
CTTATTTTTTAGTGACATTTGAAAAATGTCATTAACATTTAAAAGAAGAG
AAACAACAGTAACAAACAGTAACGAAAAAAAAGTATCATAGTTCGGATGA
CACCTTCCAAAAAAGTGAAGAAGGGGGGATCAGAAATTTTCATTAAAAAG
GGGGGATAGCAAGGACGGAGGGGGGATTGTTTAAGAAGGCGGGGCTTACA
TATATTGTAGATTATTTTCCAACACTGTTACTACACTGTTCACTAAAAAG
TGGTATTATATTTGCCAAACTTCATTTTTCTTCACTGTTTCCCTTCACTT
TTTACCATAAACAAATAGAGAGAGAAAACAAGGGAATTGATTTTTACAAG
GGGGTAGCAGGGAGAAGGGGATTATCGGATCGCACTATTCACTATATATT
TTCGAAAATTTAGCCCAAATCCCTTGGGGATAGGCATTTTTGGGGGGGAT
GCCAAGAAGGGGACCCCTTTCCGCACTATGAGTATATTACTTTTTCGTAT
TCTAACCTTAAAAATTATAATACCCTAAATTATTATAGGTATCATTGATT
ATCTATTAACAAAAAAATAATGCAATGATTTTTTTAACTAGAATTCAGAT
GAATTTCTTTAATTTGTACTGCAGTCCTATTGATAATTACATTTTATCTT
TGAATAACATTATAACTGTTTCTTTAATTTTTAGGAAAATCACGAACATG
GGAGACACAATATCCCAATCTATCAGGAATGTTGGTGAACTAGTTAAAAG
CCAAGGGGAAAAGAATGAAGCCCTCGAAACAAAACTTCAATCCATCGAAA
ACAAATTGAGCCAGCACCTGGAAACAATTAAAAAGTCAACAAAAGTAACT
GTTCCAAAATTTTTGCAGGTAAGACTTTGCAGGACTTTGATTCATTACCC
TAAATCAATATTATTAAAGACTTTCCAATGGTTTAAATTTAGTTTTGTCA
CTAATATTTTCATTTATCATCGTCACTTGAAGGAGCAAAAAAAAANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGGGGTTGAGGAATTTTCATTTTTAAG
AGGGGGTTGAGCTAAAAAAAGGGGTGTCATTTTTAAGGGGGGCTTGATAC
CCCTCTGCCCACTTTGATTTTAAGACCTAATCCCTTTAAAGTAGGGCTAT
CTTGGGATTGGTGACACAGGGGTGAGTTGAAATTAAAGTTTTATGCTAGA
AATTTTGAAATTTTCATAGCTCATAGACATTATTTTCTTGTTTAGAAAAG
GATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAGAAAAATGGGATTTAC
TTGAACAGTAAGTTGTATAATTCTTTGATTTGTTTGCATTTTAGGTCCAA
TTTATAACAGTTTGGTAAACTTTGTAACAATTCAAGTCTTACAATTTAAA
GTATCTATTCGAGTGAAACGAACAGTCATTTTGGTAGTTATTTTGACGTT
GTATCACCTTTTGATTAACAAAGTATTTTTTCTTTTGTTTCTGTTAGATG
GAATTCAGAGGTTAATGGGAACATAACGGACCAAATCCTTGCGGACATTC
ATGCCCAGTTGAAGGGAAAACAACCTGAAGATGTGATTTTAGGTAACACA
TGGGACTACTTTTAATCTGTATCTTTACCTCATCTCTTACTGAAATAAGC
AGAGTCAATGAAAACTTTGCGAAGCTTAGCTAAGGATGACTACAACCGTC
GATCATAATATATATTGGTTTAATATTGTAATTAGAAAAACGAAGTGATA
ACAATTTAGGTGGTAAATTTAGGCTCCTAATTATAAATTTGAATGAATAT
ACTGATTGGACTTTTCTTACAGCGGGTTTGAAGACACATTTTACATCAAT
TAAACGCGAACACGATGCGGAGCTGAATGATCCAGGGAAATACAGAGAAG
ACAAGCTTAAGAAGAAATATCGCGCCAGAAAACAACGGGTAAGCTTTGCA
ACCTTAAATGCTTAAGCTAGCCTCACAAAAAATTACTTCGTGGGTAATCA
AAATTCTAAACTAAGGTCACACTTGTTTTAGTGTGTACAAGATATTGTCT
CTTCTCAAACAATCATTGGTTGATATAACTCAGAGGACGGAAAAGAAAAG
CTTTCAGTTCCTTTTCACTTCCATTTTAGCTTTATAATGCACGTACAAAA
TATATCAAGGATGGTTGGGAGGAGGAATTGTGGGCNTTTTAGCTTTATAA
TGCACGGACAAAGTATATCAAGGATGGTTGGGAGGAGGAATTGTGGGCCG
GTGTAAACCCGAATGACATGACGGATGAAGAGGATGGCGCAAACAATTCG
TTTAAAAGGAAAACCCCGAAAGATCGTCCCCTTGAGTTGACAGAACTCAT
ACGGAAACTTGATCGCCGTCACGAAGAATCAATGGCGAAAAGGGATAAAC
CTGCCCTGAAAGCTCAGCGAATTTCGTCAGAGTCTCCCGTGAAATTCGGG
TAGTTACTATTTATTATATACTTTTTAAGTTTTTAAATCGCTTTTAAATT
TAAATACGCCTAATTTTCTTTCTTCGGGACTCAAAAAAAGTGTCAAAGTA
AAACTTTCTTAGAAATACCATGACAATCTCTGAAATTTGTTCAATTAAAA
AAAAGGTTTTTCACAACGTTTGCGACTCACTCATAGTACACGTTTTTTTT
AGAAGAACCAGTAAATTTTGGCTCAGGCTGGGCTGTTCTTAATTTTCCGA
ATTTTTTAGGCTTAAATGTTCTTATGATGCTACGCTTAGTTTCTTTATTT
AAAGAACTTAAAATGACTTAAAATCTGTTAAAATCCCTTAAAATCAGTAC
TTTTTTAGTAATTTCTGAAATCTGAGGCTCAGCTTGTTCTTACTTTGTTC
TTAGGTTTTGGCCAAATTTCAGCCTCGTGTTCTTATAAAATTGTTCTTAT
AAAAAAAAGAGTATACACTATGTTTATTGAAATTTTATTTCCATATAGCG
CATTTATAATGGCTTTCCACAGGATATTTTTTATGTCATTTTACTATATA
TTCATTTTCTTAAGTCATATGTAACGTGATTTCAATTTGAGAAATTTTTT
TAGCACCATTGTAAATAATAGTTACCTTTACGTTTAAAAGAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048051TCONS_00048051Clytia hemisphaericatranscript
TCONS_00048050TCONS_00048050Clytia hemisphaericatranscript
TCONS_00048049TCONS_00048049Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048049-proteinTCONS_00048049-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:797605..805397 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.5	0.62	0.72	0.53	14.43	12.29	16.5	18.27	13.27	13.39	14.74	11.95	9.16	11.45	8.48	8.99	7.61	6.26	8.61	9.7	6.02	5.92	2.71	4.83	4.62	5.63	8.62	4.49	2.79	2.14