XLOC_030746 (gene) - C. hemisphaerica

Overview
NameXLOC_030746
Unique NameXLOC_030746
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_142:649328..658752+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030746 ID=XLOC_030746|Name=XLOC_030746|organism=Clytia hemisphaerica|type=gene|length=9425bp|location=Sequence derived from alignment at scaffold_142:649328..658752+ (Clytia hemisphaerica)
ttgttGCCTTTTGATAAAGGATTCATTGATAAATCAATAAAATCTTGCTT
AAAAAGAACATTTAAGGAGAATgtcttatatttttttatacaaaaatttt
attgtttagtcacaaaaaaacttattttgatATTCCTTTTAGTAtcttaa
ttttaaaaaatgtccAAAGTAATTGTTTGGGAATATGAGACTGACATGCA
TGGTTTGTTTGCTCCATACGAGGATAACATTAGCAACAGTATAGAAGACG
CATATGTGAAAAACCCACAAGACCAAAATGTTGATTtgggaaaaattgat
catttattgaataattatgagATTGAATTCAATGCTATGATGCAAACCAA
CACAAAAAGTAAGtctattgaaattcaaaataacaggttgaatttcaatt
taaacATCATCATCTAAACAACTAGCGCGTCTAGCATATTTTGATCCGTA
TTGGTAGGAATCCAACGTTAGCAAGTGAATTTAGGCTGTGGCAGAGAAGT
TTATACATTCCATTGAccactttaaatttcattaacttaaaaattaTTCT
TTATCACAGGTGGAAGACAAAGACAAATACAACGTCAGACATACTCAACA
AACAGTACAATAGGAAGTGGTGTCTCCTGGCAATGGATGACAGAAAAAGG
ATGGGTTGTTTATGATATTGAGGCTATAGAAGCCATTGAAAGAGCATATA
ATCAAGGAAGCAAAACTTGTGATCTCGGTaatcttttttgtaaattttga
tctTGTCAGTTGAAATGGAAGAGAGTCATTCTTTCTGTTATTGTATTGTA
TCCTCAGCTGAATTACAAACTATAAGAACTTTTATCAGGTAAGTAAACAG
TTATTTAAACAGTTTCAAGCCAGCTATATTCTTATCCTGTATTAATGAGG
AATAATGTTTCCGTTTTAGGACTTCTTTCCTTTGGTCTACCAAATTTAGT
CTGTATAGATAAAGGCTACCAAAAGAACAAACAGTCGGGCTTTGTCCGTC
CTATACAAAGAAAAGTTGTTGATTACAAAGCAGTGAGTGGAACTAGAATG
AAATCTAGCGGTAGGTAAAATTTAACTGAAAAGAAGCCATGATACTCGCT
TAATAAGTCCTGTCCTTAAACTTGTATCAATGTCTTCAATTGTCTATATA
ATGATGTACATAAATTGTCATTCATTCATAATTCATCGTTTAGTTATAAT
ATATACATTAATTCAGGGCCAATAGGGTagaatctatatattaatagccg
tagtctgtatgtcattttgtttgtgtgtcactttcgttttcgaacgcaat
gttttgttcttttaaaagatgacttttgcttcttgctccacaaatgtgtt
aaatcagattcgcgcNNNNNNNNNNNNNNNNNATAAAGACTTTGAGttgt
tcgataagtttgttttgattgatagattataaTATCTGCCCAGACGTGCC
CGAGCCCGCctcttatgtttttttctttttctctctattcttacattctt
ttgttttatgttttcgaatgtaattaacgaccttatttgatttgagacat
tcgaattcgttTCAAAACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTAT
TTTTACCgactcttagtgggactgaagtttgattttctgatttttccaac
ccttacagggactgccatttttaaaaaggcaTCCTTAAGAACGGCTCATG
TCCGTATCCTTCTCTTGCCcacgggctgccttttttcgacgaatcccgtg
tcatgtctataatttcactcctcttatcttgacatcaaagttttcctaat
caTCAACAAGCACGTCAAAtgtaaagcgagcgaagcgagaaaaaaatcta
attgcaaagCCTTTTCGGACGTCGCAGGTCGCCGGTATGGTATAGTTTGA
ATAACGccctttctgatcatttttgcaacaatttaaaaatctttttcaaa
atatggttaaaagatacgtgacCTGGGAGGGacagtcaaactttgaagat
aaattttccctttaattttgacttCATCGTATTTTAAGCCAgtttcccaa
catccaaaggactttaaaatgcgttcagcaacagctaaaccggcgtgcga
cgccgggtaccggctagtactCCTTTAACCCTTAACAATGCGGTAGGTTT
TTTGAGGATTGGTAATTGAATCTACAAGGAAATGATGTCAAAATTATTTG
TCTATGATAATGCAAATGTAGCGACTTTAACATTTTTACGTCATTCCACC
CTGGTAAACTCAAACCCAGTCTCTTAACTCTTACAGATAGACGTATAGAG
TCAACTTTTCACCTTTGCTTctcataggcggttttagaccacgtctaact
tatcagaggaagagatttgtaattgtattttcattgtcttttaacgagcg
cttgcactccttcgcatgttttcGGCGTACTTTTGCTTTATcgtcttaaa
tccgccagtgcTTCTTCACTACATTTTAGGAACCTCCTCCAGTACTTTGA
CAAGCGCACATGCAGCTACAAACAATCTACCCTCCTTGAATCAACCTAAT
TCAACAACTTCACACTACCAGAGTTTGAATGGTGGTGCAGGGTCAAACAC
AAGACCCTATTCTACACAACAACCAAAATCATTACCAGTCTCTTCAGGTT
TTGTattatcatgaacatataaacgactggacatccatctcctttgtctt
tttgtagaaagggctgctagcttcgttgccgcctcgttaaaagcataaaa
tgaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNACTTGGgagtaccttgctaacaacgtcaa
aacttcgacaaaagtctctgttgttctactcttctcaagtcttttatcta
tatcataacaaagataacagaggcaaaatcatcgtcagcttgtcaaaact
ccgactaatatttctaaattttgacttaaaagtgtctaataattttagag
agtgtcgcattctaatttcaatattcttatgacacaggctctaaactttg
gcaagctatttttttcaaatcataaaaaaatttattggagtgacaaaagg
gattcaaaagtatacacgcagttgaaattctgcattttagagtagaaaat
gttgataaaatatattacaaacttgtgaaaaaattcgagaGTAATTTTTT
TGCGAATTGGGAGTAATTTTCAAGCTCTAttaatccttttacctaaataa
ttcaaagaaataaaattatgacggaatattgtcggatttttcatatcaat
tttgaaatacaggcggcaacgaagctcgcttcaaagaggcaataaaagat
agatgtccagtcgtttatatgttcatggtattATGTATTAACCactatta
cacgtttttttttatataaggaaccttaactttgctctgagcctggagtt
ccttatttttacagaaaatttcagcctcaaagttccttttgAGTTCCTTA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Tcttagcctgagcagttccttaacaattccttattttttggactactttc
agcctcgagttccttataaacgtgttccttataaaaaaaaaacgtgtaca
tcattagtgtacaaacgaaactagatctagcgctctttcagcgggtacca
attttcaaaaaaactctgatcgtaatattttgcttggccggcattgagta
acttggtccagggatgtataaaggtcagtggtattaacctttccagcgcg
caacatgttttgaaaaatgtgaaaatttgtAACTcgcataaaagcttgta
gcttgaGAATTAGACAATCATTTTGGTACTATTAGAAAGttatttttata
ctctttctaaaagcatCCTGCTTACACCCTTTTCAATCAAGTGGTCAGAA
ATTATAAGCCTTAAGTTTCAGACTCGGTATATTGGCAAATTTAGAACGTG
TATACACGTCACTCGGGTTTGAGGGGTTAAGATTATATTGataaattgaa
tattttgaaaatactgtatttcctgaaaaaaatacaCATTGAAGACCATC
TTGAGAAAACATCAACCGCGATTTGAGTATAATTGAACCCCCTGAATGGG
TGTTGTCAAATGTTGCATGCATCTTGGTGTTCATAGGTCCCTTTTGCTGG
TGAACAGTCGACAATGAGTTTTGTTAACATTCCTTGCTGTGAATATAAGA
ACAATATTTGtacaatttaaaaaacaatgtttttgaagaaattaaGAAAT
AGTCAGAATCGATATCTGGCTCAACCTTGATTAAGAGTTATCATGGTTGA
TGACCTGTTTGTACTAAtgtatttttatgtacagttgtATTTTTTATGTA
CTATTGTATATTTAATTAATGTATTTTTAAGTGTCTGTTAACCCATCTCT
CACTTTGAAAATCTGGATTATTGATCCctcctttgtttttataggTTCAA
GTAAATCGAAATCGGCAGGATCAATCAGTTTAGGCGCCTCCTCCTCCACT
GCATCCCATAAAAGCGGTAACCTCACTCTTCTATAgaatatatataaaat
attttccacAAATGATTTAGATTTATAAGGTCACATCCTCTATGCTATCA
AGTACTGGATACACTGCaacatattttctctttttacgAGCTTTATCTAT
TCCACATTGGGTAGGAGAAAGACAATCTTATAATTTTGATTTGTTAGCAA
AGtattctttttttgttaaagTTACTATGGCTTCACACCGTTTCAAGTTA
GCTTATGTGATACAATAGTTGAtagttgaattttgaatgaGTTCTATTTG
ACTTTGTAGTAGGAAGAAGGTCTTCATCAGACGACAAAGCATCTCACAAG
AAACGCAAGTCCAATTCTGCCAAACCAATAAATCCCATACTCGATCCTTT
CTGTTCGCTGAGTCAGCCTGACGATAAAAATGAGGTACACTATACAACCT
TTAAAATAAGCAATTTTAGAACTCTCCTTTGTCCAAATGGTGAAGTTAAA
CAAATCTATTTATAATGTAAACGACACGTGATTTGACCATATTGATTCAG
CCCCACTCCTGCAGGccaatattttcttatttcttaatCGAGATCTATAG
CTTGCTGGATTCATTTCCTTTAAACCCTAAATTGAGACAACTGTTTTTAC
TTGCTATTATGCTGAAAGAAGATGTTCCTAacaaagtttaatttttctat
ctttaaatcacaaatttttttttttgatctACTAGAAGAAAGCCACCACT
ACCAAGCTTCATGTTAGACACACCCATTTGAAAAAAGCGTCTCAATGTCC
TTCATGTACCCTTTtaatttcccttgtttttttcttcattagcaATGCGC
AATCTGTTTGTCAGAACTCGAAGATGACAATATGACAAGTTTACCAGAGA
ATGTTTTACAATTGAAGATTTGTAAACACAAGTTTCATGAATCATGTCTT
GAAGCGCTTTATAAAAGCTCTCATAACCAGGTACGTGCGTGTCCAAGGAT
TTGATATTATTGCAGCATTCACGTCACATTATTACATTATTTGCATCTGT
ATATGCTCAGTTAAATAGTTAAGAGTCGGGTTTCCATTGGACTATTACAG
CATTTACATCTGTAACCGTTTAGCTTTGAAGAGCTACAGAGAGTCtggtt
tcttaaaaaaagttctattaaactttttcaaactttgccCTACTAGAAAG
AGTACTTTCAATGGCTAATTTCTTGTTTACTACTCTCAGCTGTCTAGTAA
ACGCCCCCTCTgcggaccttattaggaaccCCATCCCCGTTtaagaattt
ttggaaatattttcagctgtcaaaagaaGAGTCCTTCATTTTGCTCTAAT
TAGACTTGTTTTATCCTATTTAATTGCCTTATTTTGGGggtttattaaaa
tttgaaccTATCTGAAATTTCCaggaactttgaatttgattgtaattttt
tttaatcatcttATTTCAGCAACATTGTCTTCGTTGTCCCATTTGTAAAC
AAATCCATGGAGTATTGAAAGGCGACCAACCACCAGGAAGAATGACACAT
CGTATGGATAGACACCAAGATTGTGAAGGATATAGGGGCGATGGACTGAT
TATCATCACTTATAATATAAACCACGGCATACAGGTACAGATCATCTTTC
CAGCTCTTGATATTTCTCTGAAAAGTATTAGGAATTGCCTCTGTCACCTC
GTCAGTCCANAGTATTAGGACTCGCAACTTTCTAAGTGGTTTTCGTGTGC
CTCTATCACCTCGTCAGTCCATTGTTTCTCTTTCCCCGGTAATGTTTAGg
atttttatcaacttttgCTTTTAGGGTCCAGAACATCCGAATCCAGGCCA
TCCGTACTACACAGGAAACTTTCCAAGAACTGCTTACTTACCAGCTAACA
AGAAAGGAACGAAGGTAAAATTGTGATccgttttcagattttttgtccCA
GGATTGGTACTAAAATTTGTAGGGCTGTAGCCTTCGAATGCACGTtttct
tctttataagaacataaggctttgaggccaaaatattgagaaaaagtcag
gaacattttaaggctttatggtctctaaaacacccaatattttagaaaat
tgcacataatactcacaaaatggtgaaattaagattTTCTAAAGGAaatc
tttaggcttaaaacacAAAATGTTTTAACGTCTGggggcttcaaaaattt
tagatgttcttataaaaaacgtgtacggcTCGATGTTGCGTATATTGGTT
TACAAACTTCCTTAAATCTGGAGGATTTAGTGGCTTTGGTAAAATCACTG
AATTAAATACCTTCTAAATTTTTCGAAATCGGTCAACCGTCAAATTAGCA
TAATTTTTTGGgttcaaaattttatgaaaaaattgctAATTTGGGTCAAA
TAGCCAAAGTAGTTTTTTCTTCACTAGTGCTTTAAATCTTCGCATTCGCC
AAATCGAATACATGctcaagattttcaaaaacggTAAATTGAATATGCTC
TCAattaaaaattatcttttaGGTTTaagatttatgtaaaaataagcATT
TTTAGGGTCAAATATTGGCCTTTAATTCTTCCACCCACCAAATTAAACTT
CTgtcaaaaattcagaaaatcaatcaacggccaaaataagttcacgccaa
aatcaaaacacctaaaaacacttacagaaagcaaagattttcttcaaatg
CATGGTTGGCACATTCATTTAAATACCGTCATCAGAAACGAAGCTCTGGT
ATTTGACAATATTATATAATTGACTTCTCTATTGCGTAtattattaattt
ttattttatttatagtGTTTGAAATTGCTTGAGGTGGCATTTGAACGGCG
TCTTATCTTCACTGTGGGTACATCAGCGACCACTGGACACGATAATTGTG
TGACGTGGACCAACATCCATCATAAAACATCATCAAGGAACGATGGATCG
GGACATGGGTACCCCGATCCAGGATACATGGATAATCTGATCGAAGAATT
AAAAAACGTAGGGGTTACAGATGCTGACATCAAACCATAAGCTCTTATTT
AGACGACTAATTTCCTACTCGTCTATTCTGATTGTAAGAGTAGACAAAAG
GTGGGCAGAGAGTTGGCATTTAAAACCATAgtttaaaaaagattgaaaaa
aatcattaaattgaCGTTAGAacagggcaatgcattgactttggTAGACA
GTCAACTTTCTGCCCATTTCAATTtccaattagaataggcagggtgaAAG
GTTGGCCGTTTAAAGAACCATTCCTTTTCTTTTCTTGGCAAACGGTAAAC
GCCCCTCCAATTTGACCCCATAGATGGCGAAGTTAAAAAGGAGAAGCGCT
GGAGCATGTTCTACTTTATTTGTCAGTAATGTAGATGTTTATCTTATTTT
AATGGATGTAATGGACATTCGATGGACATTGAATGAGCTTCGAACAAATT
TTTGTCATTGTTAATGGCATGCTCTAACATAAGCACAGTTTGTTCTAAAA
AAAGGCTCCAATAAATTAAGATTTCTTTTTTGAGCTTTAAACtccttttt
ttgcatttttcacttttcttaaAATGTGAAGATTTATATTATCGTAAATA
CTATTGTGAATATTTGTGTAAAAAGTTTATGAAAATTAGAATCTTATCTT
ATTGTTCTGTTGACTGATtttaaatctttcaaatcacgaggTTGGAAGCC
ACTAGGCCAGAAATCACTTTACAACATGATGACGATATTAAGTGTTCCAG
TGTGTTTAGACAGTGCTTCGTTTCAGCTTTACTTGATCTTACTGCAAACC
AACCCCCGTCTTTTTTCTATTTCACTTTCGAATTATTTTGATCTTTCTTT
CTATTTCTAAATCAAATCTACTCTCAATTCTATCTATTATAGAACAATGA
ATGAAAACTTTTAGCCATTTTTATTTCCATTAAGGCCAGGGCACCGGTGG
ATGGGACGTTGGACTGGTTTGCCTTGGCCTTCTTTAACACGGGCGTAAGC
ATTTTTCTGTCAAAGAGTAATTATTCGGCATCTGCTGTATTAAATTACTC
GTTGTAGAGATGGAGGGAAAAGTTGttcctttcaaataaaaattagttTA
ACTAACTGTCTATTTAGGGTCCactttataatttatttttacaaaactaT
ATCACTTTTGATTCCACTAAAAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048303TCONS_00048303Clytia hemisphaericatranscript
TCONS_00048304TCONS_00048304Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048303-proteinTCONS_00048303-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:649328..658752 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
DTX2probable E3 ubiquitin-protein ligase DTX2 isoform a Homo Sapiens
DTX1PREDICTED: E3 ubiquitin-protein ligase DTX1 isoform X1 Homo Sapiens
DTX4E3 ubiquitin-protein ligase DTX4 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.2	3.95	1.7	0.81	4.47	3.12	3.94	3.44	3.74	5.45	4.24	3.27	10	9.14	10.73	11.49	6.75	7.23	14.64	16.39	5.53	4.85	7.32	9.25	19.71	20.7	6.53	5.7	5.55	5.06