XLOC_031035 (gene) - C. hemisphaerica

Overview
NameXLOC_031035
Unique NameXLOC_031035
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_147:49531..54604+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031035 ID=XLOC_031035|Name=XLOC_031035|organism=Clytia hemisphaerica|type=gene|length=5074bp|location=Sequence derived from alignment at scaffold_147:49531..54604+ (Clytia hemisphaerica)
tttagaaCTACCTTGAAAAAGTTACTACCAATAAACACGCAGTAGAATTT
ATCCATAATTTATCCGACAATTTTCAACAAGTTCGTCATGATTCGTGCAA
CGTCAACAGATTCCCGTGTGGTCGATATCAACAAAGTGCAATACAAATAT
CAAACGTTACATTTCCACAGTGAAGGTAAATTTTTGCCAAGCAAGTTTTT
TTTCGTGGTGTAAAACCTTTAATCAACCTTTGCCACCGGGATTGAAAAAG
TATATGATCTTGTGTATCATAACAACCTTccttctattgcaattttaatT
ACATCAACAATTTCCTGCTATAAAACCTTGCTAAGTTGACGGGATTCTGA
GGCCAATTTGTAGCAAATCAGACTCAACGACAGTAAAGGCACCCTTTTCA
GAAAACATGAACAACATGAACTTTTTCGATATATGAACATTTCATTTTTT
AGGCTAAAACGAAGTGTTTTCATGATGCTTTCATTAACCAGCCTGTCAGT
TTTTACTATTCTATGCCTGGTAGACAAATTATGACGTTTTTGACACATGA
AGCATGCGTGAGGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAATAGATAAATGCTTATATATACTCAAAGACTCAAATACTTATT
CTAAAAATATCTAGAAAACCATAATTGCTAATGCTAATGGTCTAGTGTAT
TTAAGGTAAAAAAGTTAACCCTTTTCCGTTTCTCTTCAGCTCATAATAAA
ACCCAAAAGAGCAGTTATCTATTCGTCATATCTTTATATATTTAGATATC
TAAAACTCTCGGGAAAAATTTGCTACATTGATGTATCAAAAGTCATAAGA
CTTTTTGtacgaaaaattgggatgagTAAGGTCAAAAGCCACTATTTTTA
Ggatttaaccctattcggcctagggggcggggctgtttctgttcggaggt
caaattattggtaatagctcctgaaataaaagggcttttgccatgaaatt
ttctgtaaattcctaacttttatttagcttcaaaataaaaaaaaatttga
tacctaaaaattttcacaccttgagcataatggcatttctgacagtaagg
tgtcacaaaaattgacacttttccaatacaaatttactttttatgtcaaa
tatatcgtttaaaccgtaatttaatgaatatttgggataaaataagcatt
ttaaactcaggcaacttttttctaaagcctttgttagaatacaataacta
tttataagaacaatgggcatgatgagtgacccCCCCCCATAGTTccgaac
cgcccctaaaagcctagattgaatagggttaagcttTTATAATAAGTTtc
caaaagttatttttttgttcGGCAAAAGATACATCGTttagtgcaaattt
ttttttcaccgaaaataaggtcctcaaagttAAAATATTTGTCTTCAAAA
GAAAGCTTTCTCTATGATACTCGCAGTAATTTCATTTTGTATTGCGATCT
CGCGTATCTTGCGCTACTTGCGcaacctttttttattttactgatgTATA
AACTAAAGAACTAGGTTTCAGTTTGGATATGTCGTTATCACCACTTTGAT
AAAAAAGGTTTCAGTTTTAAATGTATCTTTATTATCGGGACTGTCATCTT
TTTGTTATTCTAACCCAAAATATATTCCATTGTATTTTGATAAATTATAC
ATACCCTTATGCTTAGTatatttaaaagcttttttttccGCTTTTGCTTT
CTTGTTTTTCTTCTAATGGANGTCATAAGACTTTTTGtacgaaaaattgg
gatgagTAAGGTCAAAAGCCACTATTTTTAGgatttaaccctattcggcc
tagggggcggggctgtttctgttcggaggtcaaattattggtaatagctc
ctgaaataaaagggcttttgccatgaaattttctgtaaattcctaacttt
tatttagcttaaaATTTGatacctaaaaattttcacaccttgagcataat
ggcatttctgacagtaaggtgtcacaaaaattgacacttttccaatacaa
atttactttttatgtcaaatatatcgtttaaaccgtaatttaatgaatat
ttgggataaaataagcattttaaactcaggcaacttttttctaaagcctt
tgttagaatacaataactatttataagaacaatgggcatgatgagtgacc
cCCCCCCATAGTTccgaaccgcccctaaaagcctagattgaatagggtta
agcttTTATAATAAGTTtccaaaagttatttttttgttcGGCAAAAGATA
CATCGTttagtgcaaatttttttttcaccgaaaataaggtcctcaaagtt
AAAATATTTGTCTTCAAAAGAAAGCTTTCTCTATGATACTCGCAGTAATT
TCATTTTGTATTGCGATCTCGCGTATCTTGCGCTACTTGCGcaacctttt
tttattttactgatgTATAAACTAAAGAACTAGGTTTCAGTTTGGATATG
TCGTTATCACCACTTTGATAAAAAAGGTTTCAGTTTTAAATGTATCTTTA
TTATCGGGACTGTCATCTTTTTGTTATTCTAACCCAAAATATATTCCATT
GTATTTTGATAAATTATACATACCCTTATGCTTAGTatatttaaaagctt
ttttttccGCTTTTGCTTTCTTGTTTTTCTTCTAATGGAGTTGTGCAGAA
GTTAGAATTCTCAGGAAGATTAAAAGTTAAAAGTATTTAAAACAGTATTG
GGTAAAGAAGTCAATTGTAGAAACTAACTTTTTACTCCTGAGGTTCGTTT
CGGATAAGAAGTTCTTCAATAACTAAAACGCGACAATATTGCATACACTT
ATTCTGGGAAAGCGATGTTCAGTGTCAGTTGCTTAGCGGGGGAGTTTAGC
AAATTGAATTTAGTTTACATTTAGAGAATCTAATGGCATAAATTTAAttc
cattttgatttgtttattttcttttagaaCTACCTTGAAAAAGTTACTAC
CAATAAACACGCAGTAGAATTTATCCATAATTTATCCGACAATTTTCAAC
AAGTTCGTCATGATTCGTGCAACGTCAACAGATTCCCGTGTGGTCGATAT
CAACAAAGTGCAATACAAATATCAAACGTTACATTTCCACAGTGAAGGTA
AATTTTTGCCAAGCAAGTTTTTTTTCGTGGTGTAAAACCTTTAATCAACC
TTTGCCACCGGGATTGAAAAAGTATATGATCTTGTGTATCATAACAACCT
TccttctattgcaattttaatTACATCAACAATTTCCTGCTATAAAACCT
TGCTAAGTTGACGGGATTCTGAGGCCAATTTGTAGCAAATCAGACTCAAC
GACAGTAAAGGCACCCTTTTCAGAAAACATGAACAACATGAACTTTTTCG
ATATATGAACATTTCATTTTTTAGGCTAAAACGAAGTGTTTTCATGATGC
TTTCATTAACCAGCCTGTCAGTTTTTACTATTCTATGCCTGGTAGACAAA
TTATGACGTTTTTGACACATGAAGCATGCGTGAGGGGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNcataagggtaccttttctcattcctca
aaagtctctcaaaggggtacaaattcaaaagttagtctctgaaagggtcc
caaaatcacaaaaatcaaaaatttttctctcaaagggtcacgatttccaa
gaattttgcccaaaatttggtgaacttcaaaccaaaatttggaaaaaatg
gaccaaaatttaggaaaaagtctctcaaagggtcccaaaatcaccaaaat
attgtctctcaaagggtcgattttcgattttcggctcggacatacccgtc
acctcgcaaacctagtaccccccggggtaACACTCAGGATCGTTCCTTTA
CAGTTTCAAATATACgagtttaattttttcttattttatagtAATGGGAG
TATTACAAGACGAAAACAAACGTAAAATCCATTCCACATCCGGTATTGAT
GTGGCTGCAAAGAAACGGTTAATGTACAGCAAACAAAAAATCAATACTGC
ATTTTCTCAAAGCATAGATAGCCCTttatcaaaattgcaaaatgtacATA
GTCCCTTATCAACACCAAGAAGTCGAAAATCTTCAGTGGTACAAATTAAA
CGACAAAGCTTTGATGAATATAGCGACGATGATATGTTGTCGGTAAGTTT
ATCGTCCGACGACGACGACGCTTTCGTCGCGACGGTTTGTTATGTTGACG
GATGCTCGATCAAGAATAAATCGCGACTGAAATTTTCCGGTAAAAGTGAA
AGTATCTGTGAAGGTGACGAAGAGTTTTAAGATATGTTAAAAACCGATGA
AAACAAAATGTACTAAAAAACTTTACTTTGTAAATATTGTAAATAAACTT
AAAACAGTAAGATTTttatttaagaatttttttgaatcatttttttgtaa
aaaggaaGTTTTTTTGGGGGAAACAAATATCTATACCTAAATTTATTTAA
AGACAATTTGTTTTAGATACTTCCCTACTTGTATATATATTCCCAAACAT
ACAAAGTTTAGATTTCGATAAGGGGTACAAACTATTGCTCACCTTCATCT
GCTGCAACATGGTCAGtttcatccttttttgacatCGCTAACACTGACCT
TCATATATCCTttgaccaagttactcaatgccggccaagcaaaatattta
ggattggagtttttttgaaattgg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048821TCONS_00048821Clytia hemisphaericatranscript
TCONS_00048822TCONS_00048822Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048822-proteinTCONS_00048822-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:49531..54604 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.43	0.65	0.64	0.42	0.13	0.05	0.79	0.34	0.24	0.2	0.1	0.6	0.28	0.56	0.43	0.81	1.15	1.02	0.6	0.47	1.74	1.41	1.25	2.07	1.93	2	1.1	1.04	0.47	0.32