XLOC_031326 (gene) - C. hemisphaerica

Overview
NameXLOC_031326
Unique NameXLOC_031326
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_155:33588..38897+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031326 ID=XLOC_031326|Name=XLOC_031326|organism=Clytia hemisphaerica|type=gene|length=5310bp|location=Sequence derived from alignment at scaffold_155:33588..38897+ (Clytia hemisphaerica)
caataaaaaacaaatatcaaatatttgaaacatGGTAAGTAAAGTTTcat attcatttttattattttatatcacTTTACACAGGGTGTTTTTAGGCACT TGTTTACCACCTTCATTCTGTGGCAAAAAGTTAATTTCAAATGGAGTTTT CTAAAATGGAGAAATGGGTATATGCAATCGAGTCTAACAATCAGcaattg tttttttcaaaatcaagttCGAAATTTTCAGGCTATTACTGATGAATCAA AAAACCTATTTTCGACATTTAAAGGGCAAACATTTTCTTCATCACCCAAC CATGTTGGGTGACCACTGCATtgagacttttttcaaactatAACAATGTT AAGGAAAATTGCTTGTAAAATACCCTGCTTTAGATAACATAATATAATTT TCCAGACAATCTATTATAAACAATTGTTCAGCTTTGGATATACAGAAATA GAATGTTTAAGTTTGCTGAAGAGCCCTCTTCAATGTCTACtcattttcaa caaattttgatACAATCCTTAACGTGATTCATGGATAGCTGTAAATTCAA GTCCATGcatattttataaatttcaaatctatTAATTTCAGTACCGTAAT CAATATGATCATGATGTCAGTATTTGGAGTCCTCAGGTATGTCTTctgtt tgttttaaattttaaagcTCTTATAGAATTATATTAAGGTTTCAAATTac tgaattaaaaaaataaaattaaacagTATAGCATAGAATGCACCCCCTAA GCTTAACCCCTCCTGAAAAGTCACTCTGcattctatgtttagtttttttt cgTTCATTTTCAGGGGcgtatttttcaaattgaatatgCAATGGAAGCTG TGAAACAAGGAAGTGCTACTGTTGGTCTCAAATCTAATGATTATGCTGTT TTGGTTGCCTTAAAGGTAAGAAATTGATGATATATAACATGTTTCTTTTT TACCTTCTTTTACCTGAATGCCAATATTAATAATGCGTTGCTTGTTAATG CCATCTGTAAACTACAAAAGGAAAAGTAGTTTCTAAGTCAACTTAAAAGT ACTAATATGACTTAGTATATAGTAGCTCCCCCCTGAGCGCAAGCTATGGA TTAGTGCCTTTTTCATCGATTACTGGGGATAATTGGGGTGCAAATCCCAT GTCAGGCAGTTATTATCTAAACAGTGTAAGAGACTAAACCCTTTTGAGAA TTGAGTCCCCAGTTCAGTTTGTAAAAAATTAGGTCGCCCTAGCTCAGTAG GTGGCCCCTGGCCAAAGTTTACCTGTAGGTAACCCCCTCACAGCCATGGG GGGAGTGAAGCTAAGATGcattctttttttctattttgatttttttttca agattattGTTTATCATTAGACTAACAAGACTTTATCATTTCTTTCCTCA GAGATCATCGTCCGAACTTTCATCATATCAAAGGAAGATCATTTCAGTGG ATGACCATGTCGCAGCCAGTATTGCAGGTCTTACCTCTGATGGTCGCTTA TTAAGGTAGGCTAATATTGTGTTTGCAATGGAGCCATTTCTCCGCAAGCG CCTCGGtggaaattacaaaaatgataCATCAATCTATGTTTAATTTTAAT CAGATCgactcaaaaagtaaaaaacctCTATGCTATTgatgaagtttttc tttttcacctATTTTCAGTAATTTCATGCAAGTCAAAATCACGTAAAAAT GATACAAGGCAATCTGTTTTTTAATTGCATCAattcatattcatgatatg caccattgcaatgtcttccatggacccaacagctgattgtttgaaagtga cgtattgactgattttacgttacttacaaccaatcagctgttgggtccgt gatgtaatgttagaagacattgcaatggttaAATAAACATGTTTTACCGT TTAAATACTTTGCTATGGATGAAATATCCAGAAATATCTTTTTTGAAGCT TCCTTTACTTCTCTGCTTTTTAGTAATTTTATGCAAGACGAATGTTTGAA TTCTCGATACGTTTATGAAGAAGCTCTACCAGTTTCCAGACTTGTCACCG CCACAGCTGAAAGTAAGATCAAAATTCATCACAAAATGCAATGTCGAATC GAATTCAGTGAGAGGATGTAATGTTTATTCCTATTGATTTAAAATCTATC AGTATTTCATTGACTTATTGCTTTGGCTGTGAATCTTTGGATAATCAATA TTCTTCTNCTGTAATGTCGAATCGAAATTCAGTGAGAGGATGTAATGTTT ATTCctattgattttttaaaaatctatcagTATTTCATTGACTTATTGCT TTGGCTGTGAATCTTTGGATAATTAATATTCTTATTATTTTAGAAATGCA AAAACCTACCAAAGTATACGGAAGACGTCCATTTGGCGTCGGAATTCTCG TTGCAGGTTACGATGTATGACAAGATAATAACTTTTAACCTTTTTTATGT TGATATTTTCGGTTTaatgttttgtcttttttgatGTTTAGAAACCCTAC TTCTTAGGGTAATTCTTAGCTCGACGGCATTTGCGTCGGCAATAGCCGAA TACCGACGTGAATTAGAATTGCTGAGCTACTTCTTTATTGTTTGTTATCA TTGAGTTTTACGCACAATTGTTACATTTCGCATCAGGGATGACACTATAT TTGAAAGATAAGGCTGTGAACCAAAACAACCAACTAAGAAAGGTTTTTAT ACCCTTGATTAATCGAACacaaattctttgaatttcttcccACCAGCGAC CCGAAATTTATGTGATAAGTAAGCTCTTTGAATACTTTTAAGAACATTAA AACGTTATTTTAATTATATTTCCACTTATAGAGTCAAGGAAGTCACATTT ATCAACTGTGTCCATCAGCAAACTATTTCGATTGTAAATCCATGGCAATC GGTGCAAGATCACAGGTAAGTCTGCGAAATGCACATCATCTTATTTCAAG TTCAATTTCTCTTCAAATTGCTTAGCTGAGTTATTGATTGATAAAATACC TCTAATATTCTGGTctttaaaattgtcattaaagcaaccaatttgtttat tttgcagaGTGCAAGAACATACTTAGAACGAAACTTGGACAAATTTCAAG AGTGTAAGTTGCTTTACTTTTATATCCCAAGATTAAATCTTGTTCGATTT TCTGTGAAGGTTATTTTTCCGATGTTAATGGCTaatatcttttatatttt tgtatctATTTTATTTAGAGGAGCTATTGATTTTTACTGgtgaaattttc tctttttttccagCCTCTTACGAAGAAATCATCGCACATGGCTTAAGATC GCTTAGAGAATGTTTACCCAACGAACAAGAATTAACAACTAAGGTAttaa aattatgttaaaaaattgAGTTGGACTGTCAGTTTTAAATTGTTGTGGAA ATTTTACGTGAAATTCTGAACACTATTGTCTCAAAAGATCAGTGCAGCCT TTTTAGTGTTTCTTTGCTAATATAATTTGGTAATAAATGTCAGTTTCAAC TATACAGTCTGTGAAGAAGCCTTTCTTCTAATGATCGTAGAACTCTAATT AGGATCTGTTCATTGAAACGTTTAAGAACTGAGCTTGCGTGGATACGGTA TATATTGATATTTCTGAAGTTCTTCAATGTCAAGCAGTGTTAAAAGCTTT CCTTCTCAGTGTGCTAACATTTGCTAataatttgctgtgtaaaatccatt ttccgtctcgGACGAAAGACCTTGCTTTGACCGGTCATGTCAAGTGAAAC CGAGTAAAATAcacaactttttttcttcactcttTAGAATTGCACCATAG CAGTTGTAGGGAAAGACAAGAAATTGACTTTGTTGGATAATGAAGATGTC GCTCCATTTGTATCTTTTCATTTATCTAAAATATGAATTAACTATTCAAG TAACATCACATGGTAGCCTCTAAATTTTAAATGTGTACTTTTGGAGACGC TTATTTCAGAAGCGCTATGTAGTAATCTTCATTaggttttcatttcaaaa tccttggataaatttttaataattctaTGGATTAGGGGCTCCTGCGTTTG TTATGTCCATCCCAATTCGTACTTAAAATAGTTTTAGTCCTTCATTTAAC GAATGATATTTTCGCCTACTTGAAGTGAGGTTTTAGTATGTTTTATCCTC CTTAACTTGAATGAACTGATGTATACAGTTGGCATTGATTGATCAAAGCA AAGACAAGAAAGACGACAAAACAGAAGATGCAACGGCCGCTCCCGAATCT ATGGAACAAGACTCAGTAAGGAGAATAGCTTTGAATGTATAAAGTCTCGC AAAATTGTAGAGTCGCATTTCAcgaattctttttttttgcatagTATGGA AAGGGGTCCAGCCACCAGCAATTTTTAGGGGTGGGGTGAGCTAAAATAGC CCCCAGCTAAATTTTTAGAATGCCGTCCCCACTTCcaaaaactgaaaatc aaaaagtattttaaacaaaattgtCAACAAGATCATCTAAATAAGTTTTT TCCCAATGACAAAATATCAACATGATGCattgtgaaaattgaaaatcaat taaGGTTGTAAGCTTAGCCCCtgcatttttatgaaaagtaaccccaaacg aaaaaaagttttagGCCCCCCTAAGCTCAGGATGGGGGTGCATTCTATGT TTTGGAAGAAAGATTTGTTGACTTGAacaaaaatgaggaaaaagaTTTCT CGTTCGACAGAAACTTTCGCATAGAAGTGAAAAAAATGCGATAGTATCTG CCTTGAAAGGAATAATAGCCATAAAGTTATCAACATAAGACTGTCGGACT GTCACTCTTACTTGAAGTTTTTGCATTCCAGCTGTTTCTGACTAGTAACC AGTTAGCCTCTGTTTGAACAGGAACTCTAAGAGGTCTTAATGTTAAGCTT TTATTGCCAGCTtgatttttgatctttttggggatttctcattgtcaatt ttcttatttttttcaatatttataatttattgattttttgatcAGAGGAA AAAGAGCAACAGTGTCATCACTCGATTCATTCTTCATTTCAGACTTCGCA AGAAGAAGCTATGGAAACATAATGGGAATGCATTATTCGCTAACAAACCA ATCAAAAGACCTTATTATGAAAGTTATATGAACGATGTGAACTCGATTAT GAACAGTACATCCACAGTGTACTTAAACATGAAATGATGGGGAATCATGT TAATTTCtctagcaaaaaaaatgttgaaataaattttgtatttaTAATAT GCCAGTCATTATGATGTTGGAAAGATAAAGAGCATCATGTGAAATTATTC TTCGGACAGA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049355TCONS_00049355Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049355-proteinTCONS_00049355-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:33588..38897 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PSMA1proteasome subunit alpha type-1 isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
289.02 296.19 329.27 314.8 238.78 188.17 332.4 327.77 344.51 306.77 305.34 266.24 229.92 224.58 261.15 284.62 296.01 317.32 132.37 149.54 199.56 202.33 173.8 175.38 336.84 340.65 194.59 186.08 143.75 122.01