XLOC_031440 (gene) - C. hemisphaerica

Overview
NameXLOC_031440
Unique NameXLOC_031440
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_161:222659..226564+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031440 ID=XLOC_031440|Name=XLOC_031440|organism=Clytia hemisphaerica|type=gene|length=3906bp|location=Sequence derived from alignment at scaffold_161:222659..226564+ (Clytia hemisphaerica)
ccggctttgggatggcaggatcctggatggtttccctaatgAAGCTAGAA
TTGCCAGCAAATcggtttttctcaaatttctggAGTTGTACTTGTCTATT
TGTCAtgaaatattgacaacaaagctctctttaaatataattttgcattt
tactttgatttttcaCAAAGATATATGAAATATTATTGATGTGAGAAAAC
ACCAACAATAAGGATACATTCATTAGACAAAATGGGTAAGAATTCACTTT
AACAAAGTATACaatataaaaattataattttttcaaggTTGTTTTTGTT
ATGAAACTAGTCTCGTATTTGTAACTTTGTAGATTTGTTCNCAATTATAA
GTTTTTCAAGGTTGTTTTTGTTATGAAACTAGTCTCGTATTTGTAACTTT
GTAGATTTGTTCTTTAAGTTTCCATTTTTGAATAggggaaaaaaatgaaa
aaaatacttacTGTAGAAAAACTCTCCAAACTATGAACTTACACTCCTCA
ATCAGAAAAGTCATTTTCGAACTGTAAGTTTTGATTTCTTGGGAAAatct
ttgttattgaaaaagcttctttcaaaaaactcaaactttttttgacAGAA
TCTGACAGAATtcctttaatttgaaaaaaaaactttaaagatgaatatga
aattaaattaaaatgattacAATGAATCAGTGATCAAAATGGCTAGATGT
GCATTATATATCCTTTattgaaaaagctgaaaaagctaattaaagtTCCA
GAAATtcagaaacatcaaaaacattcaaaccaaaaaagaaatcatatcac
AACTCAACTTGACAAGGAAGAATAAGATATTTTAATTTGTCTTAAGGCTT
GGAATAATCTTATCTATGATCAGATCAGGGggataatttattttatttaa
attatttgatactttcaaattaattgattttagtaaagaaaggaaaagga
aaacaaaGTGAAGAAGGTATGTAATGATAATTACTTGCTCAGATTATTTT
ACGcaagaattaattttcagctgaAATCAATTTAAATTGCCCTGAAAATG
CCAATTTCTCACAAATAGCATATTTAAAGAAGGTATTTTTAAGCCGAATA
TCTGAATTTAAAGATTGCCTGGGATTGATTCTGTGGGTTTTATTTCATCA
TAAAAAAGGCAAAAGTTTGCAAAAATGCAGaatttaaatcttaaattaAT
TCTTTAAGATATTGTTCTTACTaaaatcattctttttttatcattcCTTT
TGTTGGAGGAATTGCTCTCCATATGAAAACCTTTTGTTACCCTCTATAAC
CACTGTTGCTTTAAAATTTGTAAGAGGTctgaaattttataaaatgttCG
AATTAATAGAAGCCAGTTTCCTATTAAAAATGACTTTATTTTCAGCAATA
AAATCATATCCAAAAGTTTTGAGGTGTTTTAAAACATCCTAATTCTCCAA
TTCTCTTTTGTATCAGCAACATTTCTAGTTTAACATCctatattttattt
ttcgtCTAGACATAAAGATTCCACCTTCTgacgtttttatttttccaaat
gGTGATAAGTATGGTACACAACAAATTTTATgggattttatttttaaata
cattATCTGGAATTTATCTGAATGAAAATATGcgaaacaatatttgtatt
aTGATGTGAGGTCCTATATCCTGCTAGTTccagaaatatttttctttatg
gTGGGAACAATGACATACATGGAGAGTTTTCTCACCTTATTATCGTCACC
TCATTtaccttacacgtttttttataagaacattcaaaaattttgaagcc
tttggatgttcttaacttttttcagtttcaagcctaaaaattttcttaac
atgttcttaattttgccATTTGTGGgtgtttttgccaattttcaagaaat
ctggtgttttagagtccacaaagccttaaaatatccttaacttgttctta
atatcttggccatcgaagccttatattcctatagtttgttcttataaaaa
aacgtgtatctttcCTTATCCGATTTATCGTAATTACCAACCcaacttta
aacaaaaaaaaaaacgcttTGCATTATTAATTCGATATATATTTTCAGAG
GGGAATTTTTGCCAGTTGTCTGACGAGACCATTTCACGATGTGGAACAGG
AAGACATACAACACATGATGGAATTATTATGGAAGGCACTTGGGAGAACA
ATAAGTTAAATGGGAAAGGTACAACATTAGCCTACTATCATTTGAAAAGA
TTTGGTCGAGTTTGCCAGGAATGATGTCAAAATATCTGCATCTGTTGAAG
GGGGAAActggggagactggggagacttcagcctccccacttttgagaaa
atgagaactttttctcaaattcctagtgAATTTTATCCCATTCGACCCTc
tagcctccccacttttatggTTGTTCTGACGGGTATGCAGATTTACAGAT
CTCTTTTATTTAGGTCCAGGTCACAGAAGTACAAAATTATTGTTCGATTA
CTCAAAATATATTTCCCTTATTAAGTTTAGCTCCCAgcgttttttaaaaa
gagtagcccccaaacaagaaaaataattcaGGTCCCCCTATAAGTTCAGG
GGATGCGTTTTATGTGAACAATAAACGAACGTCATGTCCGGGATTTAGGA
GATAAcctattttgcttcattttctaTTTCTCTGCCAGGTAAGATTGTCC
ATCCTTCAGGAGCATGTTATGAAGGTGACGTTCTGGATAATATGATGCAT
GGTCAAGGAACCTATGTATTCACTGATAAATCGATCTATGAAGGCCAATT
CAATGAAAACAGGTATTTTTAGCAAGATCTTTTTAGTTTATTTCAgacat
tttatgtttttgaatGGATACTCAAAGTAGGGACAACATGTACCAGTCAT
GAAGATGGTTCAATTCAAGTCCCTTTGTTAAGTTCGCCCGCTTTTTTACT
ACAATGTGGAAACCATCCTCAAGACAATTGGTCTAATAACCTGACATCGT
TTACACATTGTAGTAAGCACACCTAAAGTGAAAGTAGTTTTGGTCGTAGC
TAGTTAGGCTTAATATTGATGAATACCTTGTTTGTGTAAAACTTGACAGA
TTCCCTCAGAAACCTGATATTGATAAATGCAATCTCCATTTCCTATACAG
GTTAGAAGGAGAAGGTCAGCTGACTGATCCATCTGGTCAAGTGTGGTGTG
GTATGTTTACAAAAGACTCAGCCAATGGTTTAGAATTCAAACTGAACATG
TAAAATGAGGGGATAACAAATATTGCCCTGCTTGTTTTTTCTTCTATAAT
GTTTCACAGGTAATAGCAATCAATGGCAACAACGATGTGTTAAGATTAAT
AAAATCTATACCAGACCACCGCCTCTGACTGTTACCATTTGAATTAGGTC
TATTCATTTGGTTCTACAACCTGGCAGAAATATTCCAGGTGTAGAAATAT
TGTCTTATATCTGTTATTAGTAGTTGTTAGTTGTTCTGCTTGGATTATTG
CTGTAGGGTGTAATACTGTATTATGATATTGTTTGTCGGTTTGTTTTATG
ATGAGATGTATACAACTTTACGGAATGCAAAATGAGTTGAATTCAGGGCA
TATTTACCCGGGGCACTAGATTCAAAAACGTCCATACGTGCGgtccaaaa
ttaggcctttgaaatcggacccttacagtgcaggggAAATTTGGATATAT
TTTGCGTGTGAGACTAttttaggtgtacaaactttcgtgagcagaaactt
ttgcgatttttagcgaattttaccctttttcgcggaagtaataaaaattc
tttaaaaaggccgttcgcgaaaaattcttgacaaaatagaaattctgtaa
aacttctgaattaaaataaaatgtaaatttatggcactttttagcctgtt
gAAGCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049574TCONS_00049574Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049574-proteinTCONS_00049574-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_161supercontigscaffold_161:222659..226564 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.22	18.34	23.2	25.6	83.82	62.06	39.34	41.32	30.27	25.45	23.35	28.51	9.81	10.92	4.13	4.7	8.97	10.69	6.71	7.38	9.43	9.45	11.5	8.87	51.1	49.14	7.55	8.21	2.6	3.52