XLOC_031516 (gene) - C. hemisphaerica

Overview
NameXLOC_031516
Unique NameXLOC_031516
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_165:96952..106768-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031516 ID=XLOC_031516|Name=XLOC_031516|organism=Clytia hemisphaerica|type=gene|length=9817bp|location=Sequence derived from alignment at scaffold_165:96952..106768- (Clytia hemisphaerica)
AAATAATTGGCTATGGGGCTTTTGAATTAAATCTAAGAGCAAGTGAAACC
ATGCCAAGTGTATTTTTATCTGCAAAAACCCTCATTAGTTTGCTTTTCAA
TTTGTAACAGAAACACTTAAACTACTGCAGTCTTATCATTCAGTACAGTA
CAGAGTGAACATGTTTAAAGCACTTTTTTGGGTATTTCTTTTGTACTTTG
AAGTCCAAGGGCTGGATTCGAAAATCATTCGAAAAGGTGGACGTTTAAGA
AGTAAGTATTTTTTGTATTTTTCAAGGTACGCAATCAATAAGATACAGCC
AAAGGCTAAACGCATGTAAGATCGGAAACCCCTTACAATTCTACGTTTAC
AGCTCAGTAATGCAGAACATTTAGAAAGTCTGGCGATTCTTTTCACGGCG
TATGATAATCACAGTTTGAAGTTTTAATTGACAAGAAATAAAGGACCATA
AAAAACCTGCTCTGTTTGGTTAAGGGGAAGACTAAATATGGTTTTTAATT
ATTGTTTGCAATAAATGAAATAAATCAAAGTCGTACACCCCTGTCTCAGT
GACCCGGTGGCTTTTAAAATTTCACCGGGGATAAAAATTTTTCTTTGTAA
ATCCAGTGGGGATTTTTCAAAGACAGAATATACCAGTGGGGACACAGAAT
TAGAATAAAAATTTCAGTGGGGATTTCGAAATTTTCTTTTTTTTCCAAGT
TTGTTGAAACAGTACAGTAAGTGTGATAAACAAGCAGTTTTATTTCAATC
TTTATGTAATTATATGGATATGCATAATGCATAATAACCTTTTTCTTTCC
TCCCACCCAGTCTTGATTGGGTCAATGAGGCTCATTAAAGTTGAATTACT
TATATATCATTTCCTCCCTAAGTTTATTTGGCCAAAATTTCCAAACATAG
ACCTTTCATCTTGAATGGGTAGAATAGCAAAGAAATAGACAAGCTGTATT
GAAGTAGCTACTTTCCTAGGCCAGTTGCCATATATATTTGATGAGATCAA
CGTCCTCATGATCGCGGACATAAATTTTGTATACCATGATCCTAATGACC
AGATTATCTCAATGGTACAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGATTCGATTGTATTT
GATTACGTTTACAGGAGGGATTTAGGATTTAAAAAGAGTGGTGTATCTCT
GCTATTATGACGTAACGGCTACATAAGTGTCCAAGGAGGCGCCACCATGG
TTGGGGCCGACGGGCCCAAATTTTTTGAAAATAGGACCCTCTAGATTGGC
TAAATATGGCCCCAAATTTCAAATTTTTGACAGTAAAACAGCAGTTTTTT
GGTCGTAATATAGCAAAATTTCAAGGTCTTTTCAGAGTGGAAAAGGAAAA
TAATGGGTTTCCTAGTAGTTTAAAAATTTTCCATACTCAGGTCTAGAGTT
CCTAAGCCAAGTTGCTTTTAGGCCATGTTGAGGCCTGAGCCCTTAAGCAC
TGCGTTGCTTATAAAATTAAAAACCGTTAAGCTAAAAAAGCTATGATAGA
AAAAGAAAAGATCTCACAATTTCTTTTAAAATCCATTCACTTTTTGAATA
AATAGGTATCTCAACAAAAATAATATACACATTTTCTATTAAAAAACATG
AAAATATCAGAAGCCTCACAAAGGGAGAGAGCCATAAAAATATACAAAAG
AGATGAACAAGAAAATTGTTAGAAATTCTGTGTATATATAATCTATTATA
TCAAAACCTCTGTGAGAGAAAAAAAAAGTTATGTTGAAGTTTTTTTGAAT
CAAAGTTGTTCATTTGTTTTGAAAAATAAAAATCTATTATCAAGCTTTAA
TGAAACTTATGGACATTTTTCAACAAAATTAAATATGAAATAAAATGTAA
AAACTAGACAAACAGTAATATAATGAATATGCCTCTACATTCATTTCTCC
TTATGTCACTTTCATTAAAATTCCAAGAGACACCAGCCAAAACATAAAAT
AATTTACAATAATTCCAAAAAAATGAAAAACATTTCTCAGTCAAGCAAAT
GAATTCTTGGTTCTTTATTTTAAATCATAGCATAGGGTTTCTTTACTTTG
TGTATATGCATGTCAGGATGATAGCGGAACAGGAATATAATCCATCAAAA
ATGAATTTAAAACATATTCCCAAGTTAGTTCAAGAAATGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGCTCTGAGTTTGGGAAGAAG
CACGTCAAATTATCAATATCATTGACCGATTCATAATTTTGATAACAAAA
ATCACATTCATGGTCTTGAGAAGTCTGTTTACGATCTCTTTCTATCGGAA
CTATTTGACAGGTTCAGTATCATGCAATCAATTCAACAATTTTGTCTTTG
TTGGTCACTAGACTAGATAGCCCTATCATATGCTTCTGCTGCTGCTGTAT
TTTGCAGGCCATAGGTCATGCTGTATCATGATGGACAAAATAAAATTCCT
CACAACAAGATTCAAAGCAAATCATTCCCATAATTTTTGAGTACTTCTAC
AATGACAATATCCATTCTCTCCCTTGTATAAATTTCGTCTTATGACTGTT
TTTTTTTCTTGAGGTAGAAATAAATCCAGACAAACATGTCCCTCTCAGGA
CTCAGCTTCTTGCAAAGTTTTCCAAGTTTGTTTTCCTTCTGTCTTCCTTT
TCATCATAATCACAGCAATCCATTCTTTTTAACTCGTACATAAAAAAGTC
ATAAAATTAAAATCTCAACATGACCCAATGGGAAAAAACTCTTGTCTAAT
GCTCATTCCGACATTTTAAATTTTCCGGGGGTTTTGTTGTTTGGAATTGC
TTAGGTCAGGATTGCTAGTTAACGGCTTGTCACTGTGCCGGGTGCATCGC
CTTGGGCCCGGCAGGCTCGAATTTCAGTCAGGTTAAAAAAGGGGTACTGC
TACCCATATTATAATAACATTACCCCCGTCTTTTTTGTCATTCTATAAGT
ATTTCCAAATTTTGTGTTCTGCTGAGCGAGTGTGGCTCCACGGATAGCGC
GCTGGGTTTCTGATCAGAAACTCTTTCATTTGGTGGGTTCGAACCCCGGT
CGGGCGCGGGTCAATATNGATGGTAACACAAAAGTGAGTAAATCTTTTTT
ATACAATTAACCTTCTCTAATTCGAATCTCTGTTATTCGAATCGCTTTGT
AATTCGAACTAAAATATTGGTCTCCTTTAAACCCTTTTAATTACTCTCTG
TAATTCGAATCTTTCTCTATTTCAAATAAAATTGTTTGGTTCCATGAAGA
TCGAATTAGAGAGAGTCAACTAACTAAAATTGATATTTCATCGAAACTTT
TCCAAGTTTCTTTTGAAGCAAAATAGTTTGCTGATATTTAAGTCCCAGAT
GAACTGCAATATTCCAAACAAAAAGTCCCGGGGAAGGTGTACTGGGCTTG
ACGGCTGATGGGGACGTGCTACTGAAGTTTCAAAAGTAGACCCTGACAGA
TCTGAGTTAAAAAATTTGGGACCCTGTCAGGAACGAAAAATCGAAAAAAC
CATTTTCACCACCGAAAAGTGGCAAAAGCGACTAAAAGCAGACAAAGAAA
TTGAACAATTTTGTACTATTCACCCTGAAAATTGTCCAAAATAACCAAAG
GTCGAACCTGTCAGATACACATTGNTAACATAAGTTTTCAAACTAAAGTT
TTGTATAAATTCTGTTGATGTTTTTGAGCATAGGCGGGTAGCGGGGTTTT
CTCAAAATCTTCAAGTTGCAGTGGGGACCGGCGGGAAAATAAAAATTTTG
AAGATCTACTTAGTGGGGATCTAAAAAAATTAAAAGTTTTCAGTGGGGAT
TCCCCGGAGGCAAATTTAGCCCGTTTTTTTCCCCGGGGACAAAATTTTGG
ACTTTTTTTTCAGCGGGTGGGGGTGCCCAGCGGGTCTGTGACACGGGGGT
GTCAAAGTCGTTATCCTGGTGCCTGAAGTTCTAAAAAGTCATGTGTCAAC
ATTAAAAACATACATCTGTTGACATGAAGACCAAAATGCATTTTCCCAAA
ATGTTTCACAACTGAACCCCAAAACTAGTGAAAACGATTCCAAGAAGAAA
TATATGAAAAAATGAATCGTAAAGATTATTAATGGAAATAACACACCATA
AATTCATATTTTAGGAAAATATCCTGCAAGCTGTCATCAATTGAATTTGA
AAGTACAACCTGTCTCGCCAAGTCATCTATTTCTGCGTACGGCTAGACCA
GTCATAATATCAAAACGAGGGCGAACTGACCTGTTTCAAGAAAACACAAA
AGAAGGCGTAATAAGCGCTATTTGTGATCTCGGTGTTGAAGCAGTTGAGT
ACGATGTAGCCAAGACCAAAGATGATAAGCTGGTTCTTTTCAATGATGGT
AACACAAAAGTGAGTAAATCTTTTTTATACAATTAACCTTCTCTAATTCG
AATCTCTGTTATTCGAATCGCTTTGTAATTCGAACTAAAATATTGGTCTC
CTTTAAACCCTTTTAATTACTCTCTGTAATTCGAATCTTTCTCTATTTCA
AATAAAATTGTTTGGTTCCATGAAGATCGAATTAGAGAGAGTCAACTAAC
TAAAATTGATATTTCATCGAAACTTTTCCAAGTTTCTTTTGAAGCAAAAT
AGTTTGCTGATATTTAAGTCCCAGATGAACTGCAATATTCCAAACAAAAA
GTCCCGGGGAAGGTGTACTGGGCTTGACGGCTGATGGGGACGTGCTACTG
AAGTTTCAAAAGTAGACCCTGACAGATCTGAGTTAAAAAATTTGGGACCC
TGTCAGGAACGAAAAATCGAAAAAACCATTTTCACCACCGAAAAGTGGCA
AAAGCGACTAAAAGCAGACAAAGAAATTGAACAATTTTGTACTATTCACC
CTGAAAATTGTCCAAAATAACCAAAGGTCGAACCTGTCAGATACACATTG
GTACATTTAGGGACCCTGTCAGATATCTACAGAGTTGTAGCCGAGAGTAC
TTGATATCATGAAAGAAATACATTTCGGTGAGTAATGCAATAGTTTAAGT
TTCGCATAGCTAAGTAAAACTTCAAGTGATCCTGACCAGCGGCACATCCC
CGTATCAAAATATCAAATCTTCAAGAGAGTCGGTAAAACTCATTTTTGGG
GTTCTTAACTCTTAACTCTTTATTTTGGAAACGACAACTTATTAAAATCG
AACTATCTCAGCTTTGGAAATAGCAAGATTGGTCAAGTTTGGGTTCATAG
TTGACATCGGTCAACAATTCCCAGTTTTTCCCTGGTAGATAATAGGTTAG
TATAACGTTTGATATTTAAATCATGAGATACACATTATACCTCATAACGA
AAGTATTTGTATTTACTTTAGCGTATGACGGGTGTTAATAAAGTTGTAGC
CGAGAGTACTTACGAAGAGCTTCAAAAACTTGACATCATGAAAGAAATAC
ATTTCGGTAAGTAATGCAATAGTTTAAGTTGCGTATAAGTAAGTACAACT
GTTAACTTTTATTTAAATGTGAGCAAAGGATAACATGCAAAGTCAGATAT
TCAATAGATATTCAATTTCCCGAAATGATTGAATAGGTTTTGGAGATTGA
AATATTAAGTATATAAGTCATAAAATTTCCAATAAATTATGAGGATTTTA
ACTTATATAAAGATTTGTCCCTTTTCTTTTTGCAACACAATGTATATGGT
AAATAGCAATGGGCCCGCGGTATCCCCGACCTAGAAAGAGCCCTTATGAT
GAAAAAGAGCTTCGAAAGATAAGGAACACCAATAAGGTTTTTTAGTTTCT
TTTGTAAAATGAAGATGAAAATGAAGAAGACCATTTTTTTCGTTTTTTTA
ATAGACCCATAATCTTGAGCTTTGAACTTTTTGAAACTTTCAACTTCGCT
GATTTCAAGTATGTATAGACAGAGTTTCAGAATGAATCCAGAGCCTTCCA
CGGGAGGTACTTTGTTCATGATGTGACGGATATTTGTGATCCAAAGTTCG
AAAATCAATCCTTTGACAGACTGAATTTCCAAAATTTTGCCCCTTTTATG
ACGTTTTTACGACCCTTTCAGGGTCTATTTTTCAAAATTTTGTTTTTAAT
TTGAGAGACTTAGGTCAAAAAGGGATCCTTATGTCTTGCACGTACTGGAA
TCCCATTTTGCCTGATGCTTCCCCAGGGAGCCCTCCAAAGTATGCTAGAG
ATGACCAGATCAATCGCCACGGGAATAGACTGGAGTCGTTTATAATGCGT
GTAATACAGTAGTGGCTGCGTTTAGACCAACTGGCATTTGTAATTTGGCA
TTTGCTCATGAGGGATTCGATTTTAATAGCTTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTTAGGCATTTGACAAACCGAACAATTGCGCGGAACA
ATAGAATTCAAAAGAATACTGCAAGCAATTACAAATGCCAGGCTGGTCTA
AACGCAGCCAGTATAGACGTTATATGTTAATACGATTATTGTTACGGGAT
TTTGTTTGCAGTAACTCTAAAATTTGTACCCCTTGTTTTCTTTATTTCTT
CTATGTCAGAATGAGTTGTCTAGCTTGCTAGAATACCACGGGAATGGAAG
TATAATTAATTTTGTACTCGATTTGATATTAATATACACTATCCTTACTG
ACTTATAAACCTTAGGTGGAAAGATATTCAACTATGATCAAACAAGAAAA
ATTCCACTATTTGAAGATGTTCTTTTGGCAACTCGCCAGTATAAAGTTGT
ACATTTTATCGAGGTAAATATAATAAATCTATATTTCACGAGCATAGATA
GTGCTCTCCAGGACAGGAGTCAAATTTCTTTTGCTGATGACCTCTCTTGA
AGACCATGAGAATTCAACGTGTACAAGTTTTGTATTGCCATTAGAACTGT
TAATAGACATTTCTAATTGATGACTCGATTGGNATAAAAAGCCAGCCGCG
TAGTTAAGAGTTGATAGGTGTATTTTATTCATATGTTTCGGGTATGACTC
GGACTATCAAGTGAAGTTAATTATCGTCATTGAATTTTATATTTGGGAGA
TATCTTACTCTGCCATGCACAGTATATAAAGTTGATTGGTTTCATGATAT
CATTATATACCCGGGAGGAAAGGATAGTTAGGCAAAAGTAGGTAATGGGG
GTATGTGCGGACGGGACCTCCGAAAACCGAACCTTAGAGAGACTGATATT
TGCTGAAAAGGTGACCCTTAGAGAGACATTTTGAATTTTTTTTTCGATTT
TTGAAAAAAGTCATACCCTTTGAGACTGTTTGAGAGACTTTATTACAATT
TTTTCTCTGGAAATCAAAAAATTTTCTAAAAATCCTGAATTTTCCGACCC
TTAGAGAAACTAATTTAAAACTTTCTGATTTTTCCGACCCTTAGAGACTT
TGAAAGGTGAAAAAACCGACCCTTACCGTCCGCACATACCCATCATCCAT
TTTTGCCTAAGTCCCCCCCCCCCGGGCAGATTGTAGAGGATTTTCAAAGG
TTATTTTTCTATTATTCTACACAGATGGTACCCTACCTACCGTTTACAGG
GGATACCATTGAAGCTGCAAAAACTGGTCAGTTGGTTGCTGCTATGGTAA
CACGACTTGGTATGGTAAATAACGTTTTCATTATGTCAAGTGATTTCCGT
AAAATTGCAGCTGCCAAGGCTGCTAATCCACAAATTTCCACAGTTGCATT
GTTTGGCTCACCTGGTTTGTTATTCCCAAAAGCTGTCTACGTAAAGGAAT
TCGAAAAGGCGGGGGAACTTTCCCGCCTTACTGGAGCGCCCAATCCTTTC
ACAGCCATTGAGCAATGTATTAAAGATTCTCCAGACAGCACTGAAGAGTT
TTTCGACTTTGTTGTTAATCATGGAATCATTTTTAAAGCAATTGGGGTCT
CTTTCCTTGGTCTTGATTTTCCAGTTTACCAAAGAAATCCAAAGTTGTTG
AGAATTTTCCGTCGGAATTATGGGAAGAAGATCAGCGCTGGTATTGGCAC
GTTGTATGATCAGGAAAAGAGTGAAGACCAGAACAAGGTTGATGAGAAGA
CGTTGTTACGATTATTGGCCGATCGAAAGGGGACATTGCAACGCATCTTG
ACCGATGATGTTCCAAGACTACGTAGGCTTTTATGTGTTTAACCTGCNAG
GTTGATGAGAAGACGTTGTTACGATTATTGGCCGATCAAAAGGGAACATT
GCAACGCATCTTGACCGATGATGTTCCAAGACTACGTAGGCTTTTATGTG
TTTAGGCTGTTTTGATATTATGAACCCTGCACTGCATGAAAAACTGGGAT
TTCCAATATGTGAAAAACCCTGAAAAAAAAGCATGAAATGTGTGTTAATG
TGAACCTTTTGAAAATATGTAGTTCATTTTTGGGCAGATCCGAATGTGAA
CTTTCGGCAACAAAAGTTGATTTAAATATCAAATTTACTCAAATATAGTC
TTTTTTTAAATCAGGAAAACATGATATTTTTCTATGGAAATGTCAGAAAA
TATTATTTTTGCTCGACATACAGAATATTTTATTATATATTTTTATTCTT
TGTACCTACCGGTAATGTAATCGTTTTTTACGGAAAGACCGAATTGAATT
GAATTGAATACAGAATACAAAAAAATTCCAGTTTTTCATGCAGCGCTGGA
GTCTATATTTGATCCCGGTCAACCAGAACCTCTGATCGGAATTTTTTAAA
GATTTTTTTGTAAAAAGATTTCATGAAGTAGTTTTTTTGTAATTTTAATT
AAAAAGAAACTTCACAGGGTTTTCTCATCTAAAGGGCTAAAGAACTCACA
TGAATCGTACAACTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049701TCONS_00049701Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049701-proteinTCONS_00049701-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:96952..106768 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.12	0.02	0	1.38	1.18	1.21	1.4	1.66	1.06	1.02	1.2	43.5	45.83	58.69	36.16	3.62	4.59	0.19	0.44	0.08	0.14	0.07	0.07	1.05	1.21	0.06	0.09	0.02	0.07