XLOC_031565 (gene) - C. hemisphaerica

Overview
NameXLOC_031565
Unique NameXLOC_031565
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_166:602414..608989+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031565 ID=XLOC_031565|Name=XLOC_031565|organism=Clytia hemisphaerica|type=gene|length=6576bp|location=Sequence derived from alignment at scaffold_166:602414..608989+ (Clytia hemisphaerica)
AAAAGTTGTTGTTTTGTAAATCATCCTTTGGAATTTTACTTTATTTCGCA
TTCCATCCAGGCAGATTTTATCCATGGAAAATGAAGAACCTTTTTGCAAA
GTAAGTTTGATAATCGTtgttaattttcttttgatttttggcagaataca
ccttttcgactgtagccgccaattgccgcacgGGCATGTTTTGTCCGCTA
TATCCCGCTATAAAACCGTCCAAGTCCTTTTTTTCGCATCTatagaacac
ccctttctcagtgccctggtagaactttttccctcagtggggatgaaaaN
NNNNNNNNNctcagtgccccggtagaaccttttccctcagtggggatgaa
aatttctatcaaaatgccaatggggatagaaaatctattgtttccagcta
gaaaattccagtggggatggttttggagtgcaattttttacattcagttt
tcaatggggataaaatcatcgagcaatttcgcagtggggttaaaattgta
ggatattttttccatcgGGGACGactttttggcctatttttccaccgggg
tagggggtccaccgggtctgtgacacaggggtgttatagacaatagaaaa
atgtgtcaaaaaaggatcgggtcgagtttagggggataattaaataattt
agTGGCATGCGCCTAACAACTGTGGGACtatggtcaaaaaggtgtatatc
ttcttttttttcttggaGATAAAAAAACTTGTTAAAACAAACCCCGTATC
TCATCCGGGAGTGACCAGACCACGATGAAAAGTGGCCCATGGTCTCTCGT
AACTGTATTTTcatcattcaaaaaaaaaatgagtatCAAAAGAGGTTTTT
TATGACTTAAGATTTTTATCTTAATCTATTTTTTACTATCAGTAAAGACA
GTTTAATTTTTAATTACCGTTCATTTTAGCATGGCATTGCCCTTATCAAT
CTTTATTATCGTGGTGGTATTCAGAACTACATTCGCTGTTCCCATTAACA
ACACCACCAATGAATTTGAAGTAAAAGAACCATCGAAAAAGACCGTAGAG
TCGTACAAAATTGAAGGATGTTTCAATACATTTCCTGACTCTGGAAAAGA
AACCGATATGGGAAGAGAAAGCTCTAATGCAAGGTGTCAACGAATCTGCC
AAGATGTTGGTTACATTTTAGCAGCTACCCAAGGTTCTAGATGTCTTTGT
GGGAATGTGTATCCTAAAGGTCATTTGGTTAATGATACAGAATGTCGCAC
CAAATGTCGATCGTATACCCAATGTTATAATGCTCAATCATGTTGCGGTG
GTGAGAATGCCTACTCCGTCTCTGTTGTTGGAGACATCGATGTTGCTAAG
CAAGTCTTGAGACGTTTGGCGTTGCTATGGCGAACTAACGAGGCTTATAG
GAACCACATGCAAAATCAATATATTCATGAGCAAGAACAGAATACGCAAC
GAGCTAACTGGTGGAATTCTATTGACAACGGAGGCTGGTCAAAGTGTCAA
GCTGGACATTTTCTAACTGGTGTCTATAGAAGTCCACATGTTTGGTGGGA
TGAAAGACTCGGCCGTCTTGAAGAAGGAGAATGTAAAACAGCACCTAGAG
AATTACATCCGATGCGTGGTGAAGCTGATTGCTACGCTTTGAATCTACAT
AAAAAGTTTAACAATAAAGGATGGCACAGCTGTAGAGCTGGTTACTACAT
TTCCGGCGTCTACACCTCTCCTGGCGCTGGTCTTGAGAATTTGGAAGAAT
TCTATTGCTGCAAGCCAAAATCACAAGGCGAACAATGGGGAAGATGCTAT
AACCATGATGCTCATGCTTCACTTGATCGCAAAGGATGGACTAAGTGCAA
TGCTGGTTATTTCATTTCCGGCCTGTATCGTAATAGCTGTGAAAGATTGG
GATGTATCGAGGAATTCAAATGTTGCCAGATGGGTCCTTACAATGGAAAT
TCTTTCATCGATAATCCTTCACTTGTAATCAAGACCAAACGATCGTCTGG
AGGCTACAAAGAATGTTCAATGGATGCCAAAGATGAGACACCAGAGAGTG
AATCTTATTCATGCAAGAACATAGCAGAACCAGAAGAAGCATTAAAATTG
CGTCCAGTGTCTTTCATTGTTGAGGATAAAACTGAACCAACAACCGCTAA
ACCAGAACGAGTCAAAGACTTTCGCCCTGTCCAATGCTTCCAATCGAACG
TCAAATACACCTGCACCAAATCCTTATCAGTGACCATCGCTGTTGAGAAA
ACTCTTACCATTGGAACTGGTTTTGATGTTGGGCTCACACTTGGCTACAC
TGCTGGATATGAATCAACCTTCTTTGGTCAAAAAGCAGCAGTTGAGTTTT
CAGCCGAAGTATCGTCATCGTTTTCATTCAGTTCAGAGCGCAGTGAAACC
AAGACTACTGAGACGTCCGATAGTACTGAAGTTGCAGTCGAAGTTGAACC
AGGTAGGCAAATCACTATTGATTTAATGCGTAAGAAAATCGACGTTGTTT
ATAAGTGGAAGGGAACCTTCCGCTTGTTGGGTACCTACGAATTGAAATGG
AGCAATGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNaccttcttttataaaaagtgttaagttttaatg
ggtaattaacctttttgtttcaaagttttttcaaactgtcagcAAAGaat
ttaactgttttaaaattttcggaataaaattttctaaatttatggctgtt
tttctacgaaaaatttggatgaaaaactggtcaaaaatcactattttcaa
gattttgagacaaataagcttttagaaaaaattttcgaaaatttattttt
agttcagtaaaagatacaccatctaccgcaaaaaaaaattggaaatgttt
tttcttcgccgaaaaaaagctcttcaaagttgaaatactctttctttgca
aaagtcttcattttcttcttcatcaaattttttcattgcggttcttaaat
tttcagactcaaggataacTGGCCtaatagaaaatgtataacatgctaaa
gttttgtgggctacatcaagtagaaattttgtacgtggcaaatattaaaG
TTCACTATGGTCGGAGCTCTTAaatggcacgcgcctgaccacgcgaggac
ggttgaaaaggtgtgttatcttcttttttttcttggaGATAAAAACTTGT
TAAAACAACCCCTTATCTCACCCGGGAGTGACCAGACTACGCTGAAAAGT
GGCCCATGGTCTCGTAGCTGTATTTTCatcattcaaaaaaaatgagTATC
AACAGGAGTTTTTTTAATGACTTAAGATTTTTATCTTAATCTAGTTTTAC
TAGACAGTACATTTAATTTCTACTTACCATTCATTTTAGCATGACATTGC
CCTTACCAAGCATCTTTATTCTCGTGATGGTATTCAGAACTACATTTGCT
GTTCCCATTAACGACACCACCAATGAATTTGAAGTCGAAGAACCATCGAA
AAAGACCGTCGAATCTTACAAAGTTGAAGGCTGTTTCGATACATTTCCTG
ACTCTGGAAAAGAAACCGATATGGGAAGAGAAAGCTCTAATGCAAGGTCT
CAACGAATCTGCCAGGATGTTGGTTACATTCTAGCAGCTACCCAAGGTTC
TAAATGTCTTTGTGGGAATGTGTATCCTAAAGGTCATTTGGTTAACGATA
CAGAATGTCGCACCAAATGTCGATCGTATACCCAATGCTATAATGCTCAA
TCATGTTGCGGTGGTGAGAATGCCTACTCCGTCTCTGTTGTTGGAGACAT
CGATGTTGCTAAGCAAGTCTTGAGACGTTTGGCGTTGCTATGGCGAACTA
ACGAAGCTTATAGGAACCACATGCAAGATCAATATATTCATGAGCAAGAA
CAAAATACGCATCAAGCTAACTGGTGGTCTTCTATTGACAACGGAGGCTG
GTCAAAGTGTGAAGCTGGACATTTTCTAACTGGTGTTTATAGAAGCCaat
ataattattttgatgaaagaCTCGGCCGTCTTGAATCAGGAGAGTGTAAA
ACAGCACCTAGAGAATTACATCCGATGCGTGGGGAAGCCGATTGCTACAC
TTTGAATCTATGGAACGAGTTTGACAATAAAGGATGGCAGAGCTGTAGAG
CTGGTTACTACATTTCCGGCGTCTACACCACTTCTGGCTATGGTCTTAAA
AATTTGGAAGAATTCTATTGCTGCAAGCCAAGATCACAAGGTGAACACTG
GGGAAGATGTTATAACCATAATGCTTGGGATTCACTTGATCGCAAAGGAT
GGGTCAAGTGCAATGCTGGTTATTTCATCTCTGGTTTGTATCGTAGTAGC
TGTGAAAGATTGGGATGTATTGAGGAATTCAAATGTTGCCAGATGGGTCC
TTACAATGGAAATTCTTTCATCGATAATCCATCACTTGTAATCAAGACCA
AACGATCGTCTGGAGGCTACAAAGAATGTTCAATGAATGCTAAAGATGAG
ACACCAGAGAGTGAATCTTATTCATGCAAGAACATAGCAGAACCAGAAGA
AGCATTAAAATTGCGTCCAGTGTCTTTCATTGTTGAGGATAAAACTGAAC
CAACAACCGCCAAACCAGAACGAGTCAAAGACTTTCGCCCTGTCCAATGC
TTCCAATCGAACGTCAAATACACCTGCACCAAATCCTTATCAGTGACCAT
CGCTGTTGAGAAAACTCTTACCATTGGAACTGGTTTTGATGTTGGGCTCA
CACTTGGCTACACTGCTGGGTATGACTCATCCTTCTTTGGTCAANTATAA
CCATGATGCTCATGCTTCACTTGATCGCAAAGGATGGACTAAGTGCAATG
CTGGTTATTTCATTTCCGGCCTGTATCGTAATAGCTGTGAAAGATTGGGA
TGTATTGAGGAATTCAAATGTTGCCAGATGGGTCCTTACAATGGAAATTC
TTTCATCGATAATCCATCACTTGTAATCAAGACCAAACGATCGTCTGGAG
GCTACAAAGAATGTTCAATGAATGCTAAAGATGAGACACCAGAGAGTGAA
TCTTATTCATGCAAGAACATAGCAGAACCAGAAGAAGCATTAAAATTGCG
TCCAGTGTCTTTCATTGTTGAGGATAAAACTGAACCAACAACCGCCAAAC
CAGAACGAGTCAAAGACTTTCGCCCTGTCCAATGCTTCCAATCGAACGTC
AAATACACCTGCACCAAATCCTTATCAGTGACCATCGCTGTTGAGAAAAC
TCTTACCATTGGAACTGGTTTTGATGTTGGGCTCACACTTGGCTACACTG
CTGGATATGAATCAACCTTCTTTGGTCAAAAAGCATCAGTTGAGTTTTCA
GCCGAAGTATCGACATCGTTTTCATTCAGTTCAGAGCGCAGTGAAACCAA
GAGTACTGAGACATCCGATAGTACTGAAGTTGCAGTCGAAGTTAAACCAG
GTAGGCAAATCACTATTGATTTAATGCGTAAGAAAATCGACGTTGTTTAT
AAGTGGAAAGGAACCTTCCGCTTGTTGGGTACCTATGAATTGAAATGGAG
CAATGGTGATAATTCTGGTCACCAAGATGTTACAACCGTCCTATCAGGTC
GTAATCGAGATATGTTTGCTTTTGGAACGTGGGAGTTTCCCGATACTGAC
ACGCTACAAGTGCTGGTGACTGATCAATTTGGGAATGAAAAGATCTGTGA
GCATGCGTCGGGCGATGGTGCAAATTGTAAtatcaagaaattaaaaaaac
ccAAACAACAAGCTCgtgcaaaaacaccaaaatctGGTTGAActattttt
aagaaacacacataagtgaacatttttttttgtatggAAATTTGAGCATT
TTAACTGATAGCATTTTTATTTAACTTGTAACCTGAAGTATTTTCTTTAA
ACCAAGCGTTACGTCCAAGGATTTGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049794TCONS_00049794Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049794-proteinTCONS_00049794-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:602414..608989 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.09	134.96	148.57	97.47	74.8	114.86	23.18	0	0	0.05	0	14.46	13.01	0.56	0	0	0.05	0	0	0	0	0	0	0	0