XLOC_031626 (gene) - C. hemisphaerica

Overview
NameXLOC_031626
Unique NameXLOC_031626
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_167:273995..284251+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031626 ID=XLOC_031626|Name=XLOC_031626|organism=Clytia hemisphaerica|type=gene|length=10257bp|location=Sequence derived from alignment at scaffold_167:273995..284251+ (Clytia hemisphaerica)
cagcagagcatccccgtaacccattttgcccagCAGTCGGGTTCAATCTG
AATACAAGCTTGGTTAAACTGTAATAAATTAATAATAGGTTGCATATCGT
ATTCACTACATATGACTACATCAAGCCGGTTATGTTGCATTATGTTGTAT
ATACCGAATAAACCCGACTAGGTGAGGCAGCTGAAAGGACACACGAGAgg
aagttgaaattttttattctgaaattcatttcaaataaaCCATGACTACT
CTAATACTAGCAGGACTTGGTATTGCAGGTAAATTTTCAATCTGCTTTTG
AATCGAATTCcatttgttttgtttcaaaatagacctttttttaaagaggc
agcagctgcataaatttttaaaatatgcatgatacagtaattatgcatgg
ctgtatcacagggctcgaaataacggtcggacatcggacattgtccgacc
caaatagcttcatgtctgacccaaaaatcatatttttcaagctaaagcaa
ccctaatcggacattttgtccgacccacttgaaatcgttatttcaaGGCT
tggtatcattgtttttatgctggagtacataattattcaacatggctgcc
tctttaaaaaaaggtctattgatcaAAACATCtttgtgtatttttttaaa
ttatgtaCAGTACCGTGAGTAGTCCTAAATTAGGGAGGTCAAACTCGCGC
ATATTTTCGGcgcgaaaaaaaagaaaaataggaaaaagagTCTTCGAGTG
ACTTTATTGACCCACAACTTACCCAATACTTTGAGTTTTGCAtccaaact
tttttccaaatagtAGAGAATTTATCAGAGATGAGAGAATAAAAAAAGCA
GGCAACAAAAGAATCCTTATAGCTTGGTCTTTCTGTTGGTAGcatttgtt
tttcattcaaatgaaTTGCTTCAATAGCGATTGCTATTTAAAACATGATG
GTTGAGAAGTTTTTAACCTCGCGCCAGCAGACCGCGTGTGTGTGACGTCA
TCTTTGTAGTCTGCTTCTGCGCcctattttggaatattttggtGCGCGCT
GCACTTTCGATTTGGCTTGGACGAGGTTGGACGTGTTTTGACCAAAAAAG
TGAGTTCTTCACAATCCATTTTTCTTATATCTTTTGAAGTACTTTATCAT
TTCTTAAAGGTTAtccctttttttcttcttatgtTTAGGGCTATCAGATA
GCCTACTTTTGTTTCTTCTGACTAAGTTTGAAGATTTAGCTGACTTCCCt
acctaaatccgacagccctgcctaaatccgatggggtatttcaaagatac
aaactaaaataaaaaaaactttttgctgtgacgcaacgaagatatataca
aaagtgtcaactaaactgagagactTGATACACTGAATCAATTGaacaaa
ataacaataattgcatCTTATACAAAcgtaattttttattgcaatatgta
cATCGTCATAAATGACAGTgtagggtggggcgtcaaatgtcaaagtcaga
aaattcaagatgtagtgtttttttaagaaaatttaacctattgtgaggca
ttctgcgcaatttttaaggtcaaaaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatcttatttttttcacttgc
tgtactNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatattgg
attgaaaattgtgcccattggagccctaaacgagccgttttaagccaatt
ttgggtagcaaaatgctttttaaggcgaattttgcaagctcataaacttt
aaactgattgattcacatatctgaaattttcagagatagaagtcttcaat
aaagtctttaagcaaaatgaatttcaagtttttcacttttttcaaaaaat
cataatggcgtcttcaaaaatcgctttttagcaaaaaaaatcatatttct
caaaaaatagcattttttaaggaaagcttctacaaactgagtttaaatgc
tgactgaaattttttttgcagtgatagtattctggaaatactgcaggaaa
atcaaagtcatctgggcttgggatttgggtatatccaacATTTAATGATT
GATATGggtgctaaaacgcaatatgttaatcaaaaatccaaattttgact
caaaaaatcttaaaaatggcaatagacatgagcctaaaatctttttgcag
tgatagtcttctggaaattctccagggaaatcaaaatcatttgcgtctgg
gatgcgtctatgtccgccattatggaaataaaatccctgctaagagccat
ttttcaggcaaaaacccaaatttagactgaaaaaatctgtaaaatgtcaa
tagacatgggtgaaaatttttttgcagtgatagtattctggaaatactgc
aggaaaatcaaagtcatctgggcttgggatttgggtatatccaccatttt
gaaattgaaattcgtgctaaaacgcaatatgttaatcaaaaatccaaatt
ttgactcaaaaaatcttaaaaatggcaatagacatgaacctaaaatcttt
ttgcagtgatagtcttctggaagtANatttttgagtcaaaaattggattt
ttgattgaaatattgcgttttagcaggaatttcaatcccAAAATGGTGGA
TTTACCCAAATCCaaagcccagatgactttgattttcctgtagtatttcc
agaatactatcactgcaagaaaatttggacccatgtctattgacatttta
gagatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCTCTaata
tggcaatagacatgaacctaaaatctttttgcagtgatagtgttctgtaa
atattCTAGGGGTAAAAACTATTCAGGTATAAGATGCCTCTGGGACCGCA
ATTTTTAAACTGaagccagttttaaaatgttaatatttcaagctaaaatt
caatctttttttgacggaaCAAGTCTTGAAAATGTAAATGTAAGTGGGCC
ATAAGAATTGTTGAGTGAAATgggattttttaaatgatttatttcaacta
gtatttctaaattaaaggaTTGTAAATTCACATTCTTTGTTTAATgtaat
atacaaaatatttagtcaattatgatgtatcggatggaaatatgtagcat
tttaacagagatttcatttccataagggTGGATGTAAACANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAggg
tggatgtaaacaaatctcagactgaaatgattttgttttcccaggaatat
tcacagaatactatcacttcaaaaaaatttgggtccatgtctatgtgtca
ttttaaggcaatttttattcaaaaacggggtttttgcttgaaacgttgta
ttttagccagttttaacacatatttcaattccataatgggggatataccc
aaatcctaacCCCAAacgattttgatttccctggagtatttccagaagac
tatcactgcaaaaaaagtttcagtcagcatttaaactcagtttgtagaag
cttgccttaaaaaatgctattttttgagaaatatgatttttttttgctaa
aaagcgatttttgaagacgccattatgattttttgaaaaaagtgaaaaac
ttgaaattcattttgcttaaagactttattgaagacttccatctctaaAA
ATTTAAGATATGTGAatcaatcagtttaaagtttatgagcttgcaaaatt
ggccttaaaaagcattttgctacccagaattggcttaaaacggctcgttt
agggctctaatggggacaattttcaatccaatatgattattttgttgttt
cttcataaaatttagtacagcaagtgaaaaaaataagatttgcaatagtt
ttgacatatttacaggcctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNgcagaatgcctcacaataggttaaattttcataaa
aaaacactacatcttgaattttctgactttgcctcaaaaatgactgttga
cgccctaccctaaCAGTAgcaacagcatcataaaaaataatgattGTGTT
TTGACTTTCCAAAgcacaactcacactttttaataattacattaattgac
caCTTGACATTATAGCGATCATGCGTCAtgttagatgttttttttgagaG
TTCAATGCAaaagtttatcgttcaacttggagagggaatgtttgtaaaca
tagaattttttttcataacaattATTTGGGAgatcggaattaggcagggc
tgtcggatttaggaccattcaCGGTACACTTTGCCTTTTCACCCCGCTCC
AGTGTTTGAAAATATGTAAAgcattttcccaatttttttccATACCAGCC
ATTCACCCAGCATTTCCAGGGTATGACAGAAATCATAAAGACTTCTATgg
tttaccgtcaactgctctaaaaaCTTGGGATGGTTGGTTTGAAACATGGG
ATTGTTGATACCTGCCTTGTATTTTTACTTACTGTTaaaccgtgagtggt
cctacctccaacagccctgcctaaattcGATAGGatctttcaaaaaagta
aagatacaaattaaaataaaaacaaaccttttgccagtatagacctaact
cttcatacaaaaatataccttttttcaaagaggccaccctgttgaattat
tatgtagtccagcataaaaacaatgatatagccatgcataatttttacaa
tatgcatgaaacagtaattatgcatggctgtacatagtgcggaaaggggt
ctgatccccccttcttaaatgatcccccccttcttggcatccccccaacc
tttaaaaatacctatcccccaaggatttCAGGCTAAATTTTTTctggtaa
aaagggaagggaaacagtaaagaaaaattaagtctggcaaatatatacca
ctttttagtgaaaataaagaacttcctttcatgcagaccaaattTCATAA
CAGTGCTGGAAAATAATCTACgatatatgtaagcccccccttcttaaacg
atcccccctccttgctatccccccctttttagtaaaaatttctgatcccc
cccttcttcacttttttggaaggtgtcatcccccttAAATAAGGGGGGGT
TCGAACTatgctgtatcattgtttttatgctggactacataattattcaa
cagggtggcctctttgaaaaaaggtctattagagggggaaacgcatgttt
ggactttgtaccctatgctgcattgaagcacttttttaaaagccaaagtc
ccgcaaaggtgggacaaaaattagttttttgaagtttgcaaaaaaaacgc
cacatagaagatctttcaaattcagtatgtgaatagagcagtaaaaaata
caacttttctattttacctttttttgactaagctctaggaatgaaaataa
agggataatgataattgaatactacccattgatgatccgcggtactatcg
taaagctagaatcgcttcgcatactcttcgcttgagaaaatgattgacag
attcaaatttttcacccgCGGGAGCTCTCAGGAGTTCAGTGAGCGTTCTC
AGCTCAATTCTCGTACCgcactaaaaatggtagattgagctgtgatagat
catttcgatggaagttgttggaatgtttccAAGGCTCtcgacagaaaatc
gtttgttttattgtcaatgatgacagtgtggttattaattttgttagatc
tgacaaatttatgtttgtaagtgcactttattgttttgattcccattgaa
gaatcatattctggttttcatgttattagatgctgttttagagctttaga
gctagcctgtttGCTGTGACACAATGAAGATTGGTAACAAACTTggtacc
aaagtgtcaactaaactgagagatttgatacacattgatttgaaccaaat
tacaataattgtgcttcttatacaaaacatctttttattacataaattgt
caacgttttaaacacaagcaacaaattcagaataatagaggtgaTTATTT
TTACTACTCACactttttgatcacattaattgacatcttgacattatagc
catcttgttagatgttttgtttcgagagtccttgcaatagtttatcgttc
aactcagagaaggaatgtttgtaaacatagaattttttcataacagttat
ttggggtgtcggaattaggcagggctgtcggatttagaaCCACTCACGGA
Atcactttgacaacaaatttgttttgatacttccaccaagtttatcaatc
accTTCTTTGCCCTGTGCATTGTGCTCGATTgcacaaacaatgaaaatat
gatgtaatggCATCCATAGCGCAAACCAATGGGATTATGCaagcaaattt
tcatgtaattcatacacaaatatatttttgacagCATAAAAAGTATAGTG
TGTTTGGTGGTAACAAATGTtcgcgattttcacaaaaagatatatatacc
tttgatttcttgTAAGGCCTGGGTCACCAATAAGTTGTGTTTGTGTCACT
TCCAGACCCAAAATGTGAGTCAGTCGGTCGCTCGGCATCttaaatcatcg
aaaaaatgcgcTCTGAATAATGGCAATCGGGCGGTGCTAAAATCATCTGA
AAAATGCGCTCTGAGCATAGATTTGTTCAGGCGACAAGAATCATCGAGCG
CGTGAGCTGCATGTGATGTGATTATTTTGCATATTGCGACCGCGCAAAAA
GCATTTTCCCTAGAGTTTTTTAAcgcaaaaaatctttgaataatTGCTAA
TAAATATCTTAAAACACTCAAGATCAAAACGCTGGCTACGCTGAATCTAC
AAGCAAAACTTACATTGCTCAATGAAAACCACCCCCATGTAAAGTTAACA
GGTCTGAAAATACAGCGCTAGATTTAATGGGTTTTTGTAGATATCTGTGT
TGCAGTGTTTCACTaaggaatttttttcatatattttaaatttaaaagcc
TACCCGGTGCGAAAGAGATATTGTTTTTAATACGCGGTTtataaactcaa
atcaaatgactttggaggttcggtgaaatggtggccgaatcgCCAtccca
tttttgaaaaatgcccaaaaacaactttttgtcaTAGCTGATGAAGTCTT
AATGGATAAgtcttgaaattttacaatgtTGTGGGAAATACTAAGAcatt
atgaataaaaaattattttttcgttaattgagctaaaaatgtggcttcaa
ctcaaaatttgtatcttttttagaaatgtaAGCCACACAAATTAGATAAG
AGATCTTAGAATGGGACTTTCTTAACTTGACagaggaaaggttgaatttt
tcagaaaatgttaaatgtacatactttGTAGCTGttaaatgttgtttttt
gtGACTtacttttcgataatttttaatgtgactttgtaagccacaaaatt
gtacttacaacaaaatttttgtaattttttacacCTACAGGTGTTATACT
TTAATGATTGAGTGCCAAAAACTTAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCACCTATTCACCTATATATCCCTTGTGTAAGCCACATTTTTGCCC
ACTTAACAAACTGTAAGCCACAAATCAGTGCAGCTAATGAAAAATTTAGC
CCTTTGTTGCTGTCAATGCTGAAAAGATAGTATATTTCTGACTGTTTCCA
TTATTGAGAACTTTGGTAGGGTCAGCCACATGACCAGTAAGCCACATTTT
TTGCCCACACTTCATTTGCTTGTAACTCCCCTTAAAAGTAAGCCACAAAA
ATTCACCCTTTATGCAATGGATAGCTAATTTCCTCAGCTTAACCACCAAA
GCAATCCTAAGTGTAAGCCACATAATTTTCGCAAGTTATGGTCAATTTAG
Tggctgacagtaaaaatgtcacaaaacaggggtttatttttgattgggat
CCCAAGTTAGAtaatcccaagttagagcagttgacggtactgtTGTAAAG
TGTCACGACATCCCTAATCTAATCCCGATACCCTCTAGATATTTACCTAT
AGATAAGTTTTGCTCAAATTTGTACGATAATATCCTCCTGAATTAGCATG
GGATAACATTGCAAATTCCACCGTGCGATGTTCCGTATATAAAGTATTAG
GGAATTATTTCACGGTATATCGCTCATCAGCCAAGACTAAAACTCCTATA
TAGTCGTTTGAGAGAACACTAtggtctattgaataacaaattactccagc
aGAAACTAATTTACTCCAGCGTAGATTGTCAAGAAAACACCGTAAAAAAT
TCTGGAATGGAAGAAGAATTTAAAAATTACAATCaagttttttttggttt
tttgcacaaacccctgtaactatgggcaagtagcccgttgctaagatgtt
ggcttgaaatcatACATGGAACCACTGAAAGCAAAAGTAAAATTGGCTGG
CCAGCACTCCAAACCCCATAATCTTAATATAAGAGTTTTAGTCTAACTGT
CTGTAAATAAAAGATAAGGTGGCAGATACTttggaagaaaaagaaaaatt
ctaaagtggggggagggggtcataATGAAATGCTACACAGGTGATTTATG
GTTTTTCAGGTGCTGCATATGCTGGTAGGTTTGCAATGCATGCTGCAAAA
AGAGTGAATTGGAAACAGGTTCAGAAAGCAATGCCACAAATCCCAGAAAT
ATCTTTGAATGCTTACTACAAAGGTGGCTTTGAATCTAAAATGTCCAAGC
GTGAAGCAGGGCTGATCTTAGGTAAGCTTGATAACTAATACCTCAAGTCA
AAGGTATTTTATTCCTGTACAaaaagtattttcaacactCATTTTTTTCA
ACTGGCATAGGCTTTAAAAACCTTTCACTCCCAAAGGTTACAAAATGAAC
TAAATTCATGATAAGCTACATGTACAGGCGGCCATTCTTGTAGGATAGAT
TTTAAGATGTATAGTCATTCTAGTGTTGTTCTTCTTGTTACTTAAACGGC
TTTTTGTCCTTCCTCTTAGTAGTATAAGGTCAACATATCAAATTTTGTTA
CTTGGAGGTCTTTCATTTATTCCCTTTTTCAACTCgcattctttctttct
tttgtgaaTTGCTTTAATTATGTTACTGTTGGACACCAGAGAAAAGTGTA
GTTCCATCAGTGNTGCTTTAATTATGTTACTGTTGGACACCAGAGAAAAG
TGTAGTTCCATCAGTGAACGTTGAAAAGCTGTTCTCAGGATTTGGACCCG
GTTAGAAATATCATAAGATCCATGTTTTGTTGTATACTGATTCTCGAATT
TCTTACTTTAAAGGAGTCAGTCAGAGTGCAAATCTTCAACGTATACGTGA
CTCGCNN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049875TCONS_00049875Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:273995..284251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
63.09	64.92	31.41	32.87	34.8	29.97	28.03	36.96	37.62	35.15	34.9	29.81	26.86	28.51	22.93	23.66	40.29	38.61	20.57	22.82	47.77	45.81	62.72	64.95	26.32	27.44	40.16	37	37.66	42.16