XLOC_033541 (gene) - C. hemisphaerica

Overview
NameXLOC_033541
Unique NameXLOC_033541
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_226:128054..135034+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033541 ID=XLOC_033541|Name=XLOC_033541|organism=Clytia hemisphaerica|type=gene|length=6981bp|location=Sequence derived from alignment at scaffold_226:128054..135034+ (Clytia hemisphaerica)
CGAAACATGAGAACACGTGATTCGAAAAAAAGTAGATTGATGACATTATT
AATCCGTTGAAACAAAGTCCACTTAAGCGTTGTGAGGTGGAAGACTTAGT
TCTTTTGGAAGACAATTTGTCAAAGGTTGTAGAAGGACTGTCGAGATAAT
CAGAAATGGAGCGAGTTATTATTTTCTTGGCTTTAATTGGTCTTGCATCT
TCTATGTCAATCAAATTCAATCCATGCGAGAGTTCAAGAGGTGAGCATAA
CATTTTGACTATTTTGTTTAGCCTTtaacattagttttttctatcatttt
tctgcgggaaatcttttttatttttggcccAGAATCAAACCAGACATTTC
TATCAAAACAGCAATTGTACCTTATACGATTTGCTATACAACCCTGCGTC
ACAGACcagctgggaccccagccccactgggaaatttggcaaaaagttcg
tacccggtgggaaaataccttagaaTTTCGTTCAAttcctaacatgttct
tattttcaccattttgtgagtatttttgtccccTTTTCCTAAAAAATCCA
GTATTTTAGaatcaaaaccttaaaatgttcctaacttgttcttaacattt
tagccatcgaagccttatgttcttatatagttcgtTCTTCTAAAAACGTG
TAATAATGATGACGAACGAAGAAACTGCTTTGAGAAGGTCTATCAAGATT
TTGATCTACTATTAAATCATTATAAGTCCAAATATTTAAAGGTTAACTAA
CTTTCAGTCGATCTTATCTCTGAAAACTGAGACTTTGAAAACTTCTTAAC
TTTATTAAAGTTTACATATAAAGTAATTGAAGTGTCAACTTTATTGTATG
TCGTCACATCacacgttttttcttataagaacaaactatataagaacata
cggcttcggtggccaaaatcttaagaacaagtcaagaacattataaggct
ttgtgtactcaaaaacaccctatttcttaggaaaatggtcaaaagtatcc
acaaaatggtcaagataaaagcatgttaagaacatccgaaggtttcaaaa
attttggatattcatataaaaataaaagcGTGTATCTTATAAATATGCAA
AATCTATCagtgaaagtaaacaaagttttTCATTGTTACTTCCTTCTTTA
AATtcaaataaaccagccgaggctagaaggtcagccaatagagcttagct
agatagctttaataagtgggttaacagatgtaagagatgtactgaaacag
agtagaccaaaaatgttgaataatgtNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgta
aaaactgactgctattcagtcaaagccataatttggcaaggtcagaaaaa
cataatttacatccagtcttcgtaaataaattttgtagtttagtaccgtc
aaattacacaacatgcacacaaccatcttgaagactttgctgatcgcaaa
tgataatcgaaagcaaaatttaaaatacatAACTATtcagggaagctcat
ttttcccccattttgctttaaactcccttttgattggtctatgaatttgg
gcgatcgctttaccgccttgaCAGAATAAACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgtgccaagcactggcagtgttttttaaacttt
aaaacaatgttaaatgaagaccagatggatatgtttgttatgactgtgca
gGTTGTGACgtgagtgtgcatgttgtgtaactcaAGTGATGTATGTATCA
GTGCaatgtatttaaattttaagtttcgtgacgtaatgttacgtaatgtt
tatgacgtcataatacaggtttttgggctataacttcttatagcctcaag
ttaaatttttctaacacccatcacgttgatctacatcatatggcgcttct
ttccagctatgtttgaaaatttgaaagggagtggaactggttcactttta
ccttagacatgccgtaactcacttgagaacttgacggtataattcattaa
attctagaaaccatttttcataactttctgcagtccactttctgcaagtc
tgataagagatatgtataaaaagttatcgccattcattccattccatcat
tcagtcaaaacgtgcgccaaggttacaaaaggttagaaaaacacaatctg
cgtccggaactgcgtgaaaaatagttagatcaatttcaacaagcaGACAA
GAACTGCAACAtacattaatattaatataattgatcaaatttcaaagacc
atttgtcataattttgcaagtccaataataggagatgtgatgtcatcatt
tggttcccgtcctgtcccgtcatctgaccgaccctgatttacggtcagca
ggtagagttggagagtcggaaagcttttccgctgctttgctggatttcca
atgtcgacctctgcacgctctgtgtttacaagtttNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcgctctgtgtttacaagttttcaaat
cgaagtagcgagccgcatgctaatggagagtaaaccgaaaaccagtttat
ccacggtttctcaatttcttaattcggataagtccacacggattcccttt
caacaagatgtatagctgcttcttaaaagaaaaatattttcgaccgatcg
accgaccgaccgaccgaatgacccccactttaaaaaaaaaatgacgggaa
tcaaataattttttgcgattcgccttatcaaacacttccaaaccaagtcc
aaaaaagcacgattgcatccaggctctatcaaatttagacagtagctgta
cttttgtaaactttatcaaattccaataacattataacaccatcaatccc
acctagaggaaacaagaaaaatatgtttttattgcaaaaactaataaaaa
gcagcaataaaatgtatcagaaaatttaacataaacaaaaacttgagcaa
acggctttaaaccttcaaaagatgtagaaaaagaatccccttgatgaaaa
tcatgtgtttgatttgccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAAAGC
AAGATCTATAAAAACTTTTCAATCTAATTTGCAGGTAAGTCAACAGCAAG
CAACATCTCACTCATTATCGAACCATGCACGGCTGAACCATGTAAATTAA
TCAAAGGACAATCTTCAAGTATCGCTGTACACTTCACACCTGCAAATGTT
GCTAAAACATTAGCCGTATCTGTTCACGCTAAAATCGCTTCTTTCTGGGT
TCCCTACAGTATTGATAAACCAGACGCATGTAAGGATTCAGGCTTGACTT
GTCCATTGGCTGCTGGAACAGAGGCTGATTATGAATACTCATTGAAAGTC
TCCACAGCCTACCCAAGTGTAAGTTTGATTCAAAAATATCATATTCCTTT
ACACACTATATAGGTATGTTAACTGCTCACAGACTGTGCTTTCCCGTGAA
AGTCCAAATTAAAAGTCGACTAGTCCGCCATGCTGTTCCTTGTTTCATTA
GATTTTCGagctttcaaatttcaaaaaattcgaaTGATCTCACTGTTGAC
AAACAGAACAGAATACAAATTAAAAGAGGAATTaaaagagggatgtcgac
attagaccaacttaccaTAGCTAATAGAGAAAGAGTATTTCAcggtcaaa
aaaatttgaaacgaTTGcatcgcgggaattaatttttgcggtNCGTGGAA
AATTTTatctatttgaatgctcagcttaggctgaccaaaaagctatctaa
aaaattgaaaaatttgaaaaatcgcACGCCTAGTATTGATTCGTTTTTTG
CGCGCACTTGTGAATGGAAAAAGAGTGAATAAGTCATGCCCCGTACctca
tttttgcctaagttcAACAACAAAGTACAACACGGGCGTGGCCGGGCCGG
ATAGGGTTTTATGTTATAGTAACTACCTCCATTTTTGATTATAGTTTAAA
CCTCCACAATACTCTATAGAGCCTTCCGAGAAAAAATTGACCAAGGGAAC
TCGGAAAATAACATGCTTAAAAGCCTTGAGCTGTCTATTGTATAGAGATA
CCAAAGCAAGATCTATAAAAACTTTTCAATCTAATTTGCAGGTAAGTCAA
CAGCAAGCAACATCTCACTCATTATCGAACCATGCACGGCTGAACCATGT
AAATTAATCAAAGGACAATCTTCAAGTATCGCTGTACACTTCACACCTGC
AAATGTTGCTAAAACATTAGCCGTATCTGTTCACGCTAAAATCGCTTCTT
TCTGGGTTCCCTACAGTATTGATAAACCAGACGCATGTAAGGATTCAGGC
TTGACTTGTCCATTGGCTGCTGGAACAGAGGCTGATTATGAATACTCATT
GAAAGTCTCCACAGCCTACCCAAGTGTAAGTTTGATTCAAAAATATCATA
TTCCTTTACACACTATATAGGTATGTTAACTGCTCACAGACTGTGCTTTC
CCGTGAAAGTCCAAATTAAAAGTCGACTAGTCCGCCATGCTGTTCCTTGT
TTCATTAGATTTTCGagctttcaaatttcaaaaaattcgaaTGATCTCAC
TGTTGACAAACAGAACAGAATACAAATTAAAAGAGGAATTaaaagaggga
tgtcgacattagaccaacttaccaTAGCTAATAGAGAAAGAGTATTTCAc
ggtcaaaaaaatttgaaacgaTTGcatcgcgggaattaatttttgcggtt
ttgtcCTATTTTGGAAACATTTCTTTCATGTcagattcttcaaatttctt
tatGAATGGtgtcaaaacttgtaatttGCAGGTTCTAAAAATTAGTTCAC
TTAAGTTATTATGCATCACATTTAACTTTCTACAATTTATATTTCATATA
GATCTCCTTACCATTGGAATGGAAAATTACGGACGATACCGGAGCATCAC
CCGTCTGCGTTGTCTTCCCTATCGTGGTCACATCCTCTGCTGCGTCCATG
TACGAAGAAGAATCTCTCGCACTCATTCCCTAGATAATTGTTTTATAATA
gaaaatacagttgacactctctaattcaacGTTTTACTATTCGATATGCC
CCAAAAATATGCTCTCTTATTTaataatattgaaagccaccgtcaacaag
aaactctgaTAACGACGCACACATCCTCTTCTGCGTCCATGTATGAAGAA
GAATCTCTCGCACTCATTCCCTATATAATGTTTCTATCATAgaaaataca
gttgacactctctaattcaacGTTTTACTATTCGATATGCCTtaaaaata
tggtataatatcagggttggtcaaatcaaatttttcagaaaatgagcaag
AATGCTAAGCAATCCCAGGGCGGACCCAAAAATTGTGTTGtcaataatat
tgaaagtcaatGTTGACAATAAACtttcataaacgacgctctactattca
atacgctctcttattcgataatattgaagtCACCGTCAATAAGAAACTCT
GATAACAACGCTCTTCCACTCGATGAAAACCTAATCCCCATTGAAAATCG
GATTAGAGAACGTCAACTGCACTTTTACTTAACTCTTTCATTGTATCAAC
TTTACTTACTATTAATGAATCAAGCCATGGCTTAATGAGGTAGTACAGTA
TAATGTATCgagaacttttttcatattttccaatagtttataatttttgt
acaatttttacGAACTAGCAATAAAAACGATAATATAATgtacaattttt
aaatacttcaatggaaagaaaaatttcttcatcAATAGACTGGCACTCCA
GTCGGGCTAGAatggtatcacgcgggaaaagtgagcgtaggagttaggta
aacGTAAGAAGTAATTTTGTCGGAAAgctaatcagcagcctctcgccaac
ttttgctcgttctccaacgcagctcctattctaacaaacgcccgccgcct
ttatgttcccgccctctgacatgattaattaacagactagttttcTAGTC
TATGTCTTCAATGGTAATCTTCAATGGCAAATAATTGGACAATTCTCAGT
TCCACATCCaaagtcaaattttcaattacCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053103TCONS_00053103Clytia hemisphaericatranscript
TCONS_00053104TCONS_00053104Clytia hemisphaericatranscript
TCONS_00053105TCONS_00053105Clytia hemisphaericatranscript
TCONS_00053106TCONS_00053106Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053104-proteinTCONS_00053104-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:128054..135034 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
NPC2epididymal secretory protein E1 precursor Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55	0.46	1.18	1.71	1.33	1.07	27.66	30.85	101.76	55.25	165.51	113.95	154.22	160.28	357.11	731.19	266.76	233.1	287.34	322.17	202.1	209.13	193.63	192.63	143.52	164.62	218.69	274.33	1097.71	738.23