XLOC_033544 (gene) - C. hemisphaerica

Overview
NameXLOC_033544
Unique NameXLOC_033544
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_226:192758..196220+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033544 ID=XLOC_033544|Name=XLOC_033544|organism=Clytia hemisphaerica|type=gene|length=3463bp|location=Sequence derived from alignment at scaffold_226:192758..196220+ (Clytia hemisphaerica)
CAAAGCGAGTTGATCAATTTAAAATGGCGTCATGAGATAGCGCCAGGGCT
TCATCACAGGGCATCAAAGCTTACGAGGTTTTCAGGTAAATCTTCTGTCA
GCAGTGCTAATATTATCATAAACGAAAGGTTAAATAATCGGACTACTGTT
ATGGCAAGTTTTGAATTACCGTTCTCTTCGATGCAACAGATTAAAACCTT
ACTTTTGGAACTCGAGTTAATCATTAATGACGTCATTGCACGTATTATAA
TCAAACTCATTCTTCCAGTATGATTTTAAAACCTCAGACCCATAAAAAGA
TGAATCATAGATATTTCCAATAATGATCAATAGCTGCAATCAActgtttt
caaaagataaaaaacattaCAGTAATCTACTATAAACCTATAATGAACTC
AAAATCCTAAAATTCTTTGATCTTGTTGAAACACTCAATATTATGTTCAT
ATACCGCTACCTGAATAGATACCTTCCTTCTGACTGTCTTTCTACTTTTA
CCTTTTCTGTAATTCCTCATGACATTGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTTT
ATTAGGTTGCACCATTTGTAATTAGGTTTCTAAACTTGGTGTCCCTTCCT
TcgggtaaatatatgttttgaattgaattgaattgaattgaactGTAAAA
ATTCTTACCCAACCCAACACAACAAGTATAGAAGATATTTGAATACTGCT
TCTTGGATGGTAAGTTTATTAGCTTGGTTTACCTTTGCAAATAAATCTAT
CCTAATAAATCCCTGAACAAAATTTGGGCGTGTTCTCGAGAGCCGCTTTT
TTCCGAACATTTTATCGCCCTTTCCAGACGGTTGTAATCGATATAGCTAA
TCGATAATTAATTGAGGAGGTATATCCATTAGAATCGATCGACGTCTAAA
AAATCATGAATATCGATTATTAGCTATCGATGATATCGATCAGATATCAA
TCATATTGATCATATCAATTAGATATCGGTTCCATCGATCAGCTATGGAG
TATATCGATTGGCTATCAATTTCTAATCGCTATTATCGATTATATCTCGT
ATAATCGATTATCGATTAAAATTCTATAAGCTAGGGAGGTCGTTCGTCAG
GATTTTTGCCACGGCAAAAAGAGAAAAACCCAAAACCAAAATTCAATCCA
TTTAAACTTACTTTTCTACAATCCAAATTTGTTCATTCTTCattcagtct
gggaaatcctctcaatacaccgtttaggagtctcgctatcttcacggtac
tccattgcagaggccggtaaaaatggtaggtaaaaatgcacactttagta
ctgtgaaaggttagaggaatgtaaacattgtgaatttctTTCTCTccttt
taaagagaatgatttagatatttgaacatgatatcaatgataatttataa
gtctctcctgaaaatttcacaaaaattcatcaagaggaagagaagttatg
attaaaaggagttctttacctaccgtttttctgctatgtttccttatgag
aaccagatgtttacctaccgtttttttacggaggagagtgaattttNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNttttttacggaggagagtgaattt
tccgtggtcgctaaaatcaaaacaatggaaaattggattgacgcgtgcgc
agtcgacactcctaaacggtgtattgcacgcttatgttccgaggccgtaa
gcgcgatatgatttttcagtttgaatttatgtctaatgttattgattttt
gaagtgcttgttctaagagatgagagaatataattatttttagttttcaa
gagaagcaaatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccgccccccccccc
cccccaccaccACAATCTCATAACTTTTTacaccatttttttcaaaaaaa
atctctgGCATAAAACagcatcaaaatttatttggtCTTCTTATAAACTT
ACATCCACATCTGCTAATGAGTATTATGTAGAAGAAATCTGATAtaccaa
atcaaatcaaatggaCATATACATTTATACATTTTACATGTAGAAACCTC
TGAAAGTCATGattaagtttttgttttttcagacATAATTTTCATCACCT
GTCTATCAATCATTCAATTGTCGATATCTTACCAAATAGTCAACCAAATT
ATAATGTTAGTCCAAAAGAAGTGGTGGGTTTTAACTTTGCATTATGGAGT
AGACGTGGTCGTGTACAATGATCTTAGACTGGGCAACCATAAAATGGAGG
CGCGGTTTATCATTAGATGTTTTCAACAAAATCCAGAACATTTCACATGA
GTGAGTATTTAAGTgtctatttaaaatttttatctatttttacaGTAGCA
CTTTCAGTGGCTGAAATAATGGTCAGACATTGTTCGACCCCAATTGCTGG
AATGTTTTACCCAAATAAATAATGTCCCTTTCCTTCcaagtttttgtttg
ttgttaTCTTTCGATATCCCTATCTTATATCGGACTCGTATATCACCGCA
CTGACTTATACCGTTTTTCTACTATACAACATTGTTCCTTTGCAGGGCCT
TCACACCCTCCGGGCTTCTTGTTTGATGAAAATGGATCatttgatgaaat
attttttgtttagacTTTATTGTTGAGCATTGTTCATTGATGGAAAAGAT
GGTGTTAAAAGCAGACCTGGTATCATGGAACAAAGAGTATAATTTTAGtt
taaaaatctaaagaatTGACATGACAATGTAAGAAGAATACATTATtgca
atgttttcatttttaatggtttttacTGGTTGAGTGTGTGTCACGCAGGT
ACTCTTGGGTTCCTAATAAACGAGGGGtcggaaaatatttcaaaaattaa
taaacgggcaGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053112TCONS_00053112Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053112-proteinTCONS_00053112-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:192758..196220 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.3	2.51	1.99	2.17	0.97	0.55	0.8	1.49	1.22	1.29	3.45	0.69	1.1	1.71	3.92	4.21	2.48	3.81	1.1	2.41	2.39	2.48	2.72	4.41	0	0.3	2.55	3.02	2.63	2.68