XLOC_034175 (gene) - C. hemisphaerica

Overview
NameXLOC_034175
Unique NameXLOC_034175
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:47183..51561+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034175 ID=XLOC_034175|Name=XLOC_034175|organism=Clytia hemisphaerica|type=gene|length=4379bp|location=Sequence derived from alignment at scaffold_242:47183..51561+ (Clytia hemisphaerica)
TAGAAAacagattttttaaacattggcTCGCTTTGAGTCCATCTCCATTC
TAGAAAAGGACTTTGTTGTAAGAGCTCGATTTGAACTTCATATTCAGACT
TTGGTATTGACAATCGATGCAAATTATTTAGGTTACCATTTCATTCGGTT
TTTTAATCTCAATATCAACAAATTCTCTTGTCTCTCCAACTACAAAACTT
TTGTTTAATTTATGAATTTCTATACAtagcaatttttatttttagaatgc
CAACTGCCCGCTCGAAATTGGAAACGGGGATCAGGGTCCATTTTTTTAGG
TTCTGAAGATATCTGTCAGGGTCtcaaatttattaatttattaattttca
agatATGTACCTGACAGGGTCGGCTTTTGGTTATAtatggacaattttca
gggtagaaataagaaaatctttcatCTTTCATCTATATGTcctcattttt
gccacttttcatgGTGAAAATGGAAcagttttcgatttttcgttccGACA
GATTCCAAAATTTTACCAAACATttatatctgacagggtccactttttaA
ACTCCAGCGGCGCGTCTCATTCAGCCGTCAAAGTCAGTGCCCCCGGGTCa
actacagtatatggcccccaaaacggagacggcccccaaaacggaggttg
tcattaaaatgaggattctgacttgtagatttatcagaattaaacaattt
ttgtttattttgaaagaatgatggttacaCTAAAAAATGagtatgttttt
gatggtttgagacagattcaaaataacatatttgcgaaTGAAGGAGATAT
TTTAACactaaaattaaataaaaattgcatataactcactctagctcctt
ggatattggaaataagttatgaaaatggggtataggaaactttctacacc
taatgccgttcagaaaatgcagatacatctgtgactttggAGGATGGGtt
aaagatatagcatcttaaaggtcaaccagtattttgggaccctagaatca
gcattgataaaaccgaaaattctaaaaatgagaaacagcaaaaaatgttg
gaattccattcctatcaggttgagttaatagcttataacaaaaaattaac
attatatataaaaattttcgctgaatcagcaaaaatggcaaattctgtca
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAAGTTTTGCAtgcaagaaaaatttttgtaaaacg
tcttttcctctagctttgagagaaattttaaatttgatcgccgttttggg
ggccacatactgtatagACTTTTTTGAACGGTTAAAAACTCCAGTACCTA
AGATATGACAAACTAATAATACACACAGTACAACCACATTTAAAATGTAC
CAGtggagtttttttagtttttttcactcTTTTGACTATACAATAGTATT
CCTGCTAGTTTTATGAGTTAAATTGATATCGTGGTCTGTTCTGAGACTTA
CGTTTTCTTCATTAATCGTGAAGTTGCAATTTTATAAAGAGGAGGGCAAT
TGAGGGAGTTAGTTTTTTTGGCGTCCTCGTACTagggaaaaagtttttga
ataagTACTTGCGCGGAACAAGTTCGAACTTTTccttattttgaataata
agaTCTGCTATTTGTAGGGAAGCACAACCAGCGTCACCGAAGTTAGTGTT
CCAGGCAGCGTTTGATGTATTAACGACGCCCCACCAAAGAAGGCTGGTGA
GGGGTACTACCCCCCCGTCATCACGCTACTGTTAACTGGAAATCCTTTAT
ACTGATTTACATCGAAAAACGGTTGATTTCATGATgggaaaatctaaaat
aaacaCAAAACAGTGAATAAATATGCTGTCTAAGTTGAAGCTAGCACTAG
GATTTATTGATGGCAGGAAAGTTTTGTAGCTTTGCttggattttcttttt
gaaacatGGTTATTGGTCCTCGAACCTTCTACGCTGTTTTGTAAATGGtt
taaaaaacaatcaaatgttttttctttatgattttcagTCGCTCGGATGA
TTGGTACCCCGCACCAAGCTCGACTCAagttctgataaaaaaattgacgt
cacttaCGTCAAAAGAATTCTATAAACGTTAAAAAAGccaatgcaacgac
ttcgatTACACAGAAGAAAAATCAACACAGCACAAGTCGATCACGTCTTT
TGAGTTCAGTTATTGGTTGTTTTGACATCTTCAATCAAATTAACATCTTA
TCACTGGAACTTCAAAATGGCTCAAACTGACGCCGCGCCACTACCTAAAC
ATGTTTACGAGAACGCCAATCCTGCCGATAACTCTCAAGAATATGTCATA
AGTAGAGAAACCTTGAACGACAATACACCGAAAGTGCGAAGACCCACAAA
ATACAATGTTAATGAGCAATCGTTGCCTTTATTTCAAATGGTTTGTGAAA
AATGTGAAGAAGTTTCAGACAAAATTGCTGATTTCGTTCCAGTTTGGGAT
GGATTAGTTGGTAAAATGCAGGATATTTCTGGTATGCGTAAAAGATACAT
CTTAGCTCTTTTTGTAAgttgaaatttcttttcccaTTATTCTACTGGAT
TTATTAGCCAAAAAAAGGGATATATGTATAAAGATACATAAAATGTATAA
GAAAGGATAGATATTCTTGCGCAACAGGAAACCCGTCCGTATATTTTTGC
AAACCCCTAAATCATAGCCTTTCATAGTCAAGTGCTCTTTTATGAACTTC
TTTTTGAATAAGTTACTATTGAATTACATTTCATGATGACAAAGGTAGGC
TCTGCTCGTGAGAAGGACCGACTTGAAGCTTGGGTTTTCTCCAAGGTTTT
ATTGGACtgtttcgatatttttttctgaaatcatCTTCATCCAAAATTCT
TACTCTCTACCTTTATAGTTTTGCTCTCCACTCTTCGTTTTGGGGTTGAT
CTTGGCGTCACCAATCTTGGCACCAATGCTTTTATTGATCTATCCTATGA
TAATGTCAGTCAAAGCGATCGAGCATAAACAAGAAGCACGCACTAGATGG
CTCATTTATTGGCTTTTCTATAACGCCATCACTATAAGGTATATACTTTG
TTGTCGTTTTAATGTTTCGGCGGGTTATATCCTTGAAATAGTTTTTATGA
CAAAACATTTTATAGGGTATCGTTGGCAGTCTAAGGTATGGGTGTTGTTC
TGTTCTCTGCTGTTTATCAGTGTGCAAAAGCAACAGTCTGAGCATTCTCA
ACATCCCTTTTGTTATAAAATAACACTTACTACTAAAGATACTGGCAGCT
TAAAAACTTCTCGtgtggtttttgtttttgtacaaTTACGCTCTCACTTT
GTCTTTCTCGCTTTCttatattgtaaaatatttcgTTCATAAAATGggga
aatatttaacaatgcTCGTTTTCTGGTTGTGCTCAAAACACATTTTCATG
GTTTATGCCTGTAAAGGAGGTCTAAGCAAATGATAACTATATTGTGAAGC
CTTAATCCCTTATGTGtatatattttctatttttcagtgAACAATTTATC
GGTCCATTTCTTCATGTCATGCCTGGATATGCTTTTGGTAAAGGACTTTT
CTTCGTCTGGTGTTTAGTGCCATTCAACGAAAACGGATGTTACTACGCTT
ACCATATCGTCCGTCCGTTATTAATCATACCTGTCcgaaaaattgatgaa
tataTTATGGTGTccattaataaaatcaaaaacattgttCACGACAACCA
AGACTTAGCAGCAAATTGGACTTTGAATGCTGCCACTTTGGCTGGTAATA
TGCTGGccaataaacaaaaataaataacagaaaaaggaaatttaacgtta
tcaacaacatttttatataataccaatattatgtgtttttttttaccgTG
AATTATATGTTCCACTTTCATTCAATGCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054158TCONS_00054158Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054158-proteinTCONS_00054158-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:47183..51561 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
191.12	186.31	84.98	68.21	18.55	14.05	6.6	6.18	2.99	2.97	2.39	1.85	1.68	1.65	1.24	1.86	1.58	2.49	0.82	0.66	1.67	1.63	68.37	59.89	344.82	160.6	4.29	6.12	19.16	24.04