XLOC_034205 (gene) - C. hemisphaerica

Overview
NameXLOC_034205
Unique NameXLOC_034205
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:677870..683673+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034205 ID=XLOC_034205|Name=XLOC_034205|organism=Clytia hemisphaerica|type=gene|length=5804bp|location=Sequence derived from alignment at scaffold_242:677870..683673+ (Clytia hemisphaerica)
agcaaaaaaagagaaaaattgtgaaaacatCACAAACTAATATATTCTAA
TTTATAAACCATATCAAAGGAATGTCAACATTAGATAGAAGTCCATTAAC
CGCACGTTGTGACTCAAGTGGATCAGAAGAGACTAACGACAGGAATACAC
CTTCCCCTTACAGTATGTTACAAAGTAACCTTGGTGATAACGAACCTTAT
AATCAAAATCATGAATACGCAAAACCTGAAGATTTAAGAGGTGATATAGC
TTTCGAACTTGAAAAAATCGATTCCGCTCGTAAAAAACGGAATTTAATAT
ACGAATCAACAGCACCGATCAGTAATAAACTTGATAATAACCGGAATGGT
ATATTACCTCGTCCGCAGACTGATGCATCCGACGAAGCACTTATACCGCT
CGGAACAGTCAAAGGAACGAAAAGACGAAGGACATTACTAGGTCTGGTGA
TAGCAGTCTTTATTATGTCTTTGGTAGCTGTATCGTTGGCAATTTTCGCA
TTTTTAAGCAGAGATGGCGGTGGATCAATGATGACTCAGAAATCATCAAC
AGGTAAGAAGTGTTctctcaaaactcaaaaaatatcgaattttaaTCGAA
GAAAAGCTCGTTATGATATAATGAAAATATTCAGTGCCTAAAGGTTTAGA
AATGAAACCAACCTTTCCGCAATATATACGTGAACGTTATATATAATCTG
AAAGTAGTACGCCATGTAAGAAACCTCTTTTGGGCCATTTGGCAAAGAAA
ATAGTTATTTTAGAATCATTTTAGAATACTGATAAAAATAGATACCTTAA
AGAAAGAAACTGCGAGAAGACATTTCCGCAAATTTTATATTTCacggttc
acagctcaaaattcggaagtttcgcggaatttaatttcacggttTTGTCA
AAAagccgcgaaattaaattccgcgaaaatttctttccaaGGTAATCCTA
TAAcataatactttaatgggataaattttcgcggggattNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtctcgattttgtgacttttactgtcaaatcat
gcatattggttgttgaaatacacattatttgcgcctctttgatgcaagta
accattcaaatagtatttctttgacatattttgagttttgttcaGAAATA
ATTCGCAGATGGgccttttttaaatttccaacgggacttattttcgcgga
tgacacccaaatccgcgaaatccgcgaaaattaatccccgcgaaaattaa
tcccattaaagtatcccCTTTGAAATTTAAGTGAGCTGCATTCAAATCTT
GATTCGGGTTTTAAACTTCTAATCAAATTAACTTTGACAAGAGAGGCACA
TATGAGAAAATAATATGATCAAAGCCACGTTACAAAGCACTTCATCACAT
AGTTGTCATACCTTTGAAATGATCATTTGATTGAATTATAATTTCTGTCT
GGTTTTCGTGGTcgattggaaagaaaaaacgaTTAAAACGATACCAATCT
AAGTATTTTAAGCTGTCATGAAAATGTCACAGCggtaaaaatgttcttaa
ccaaAATTTGATCGTTTTATaacacaatacaccttttcgaccgtagccgc
taattgctgcgcgggcattttttgtccactttaccaccttaaaaccgtcc
cagtcttttcttcgcacctatagacaatagaaaaatgtgtaaaaaaaaaa
aggattggatcgagtttagggggataattaaataataaagtagcACGAGT
CTGACCacacgactacggtcgaaaatgtGTATAGGGATAAATTCATCAGA
CGAAtacaattcctttgtttttttcttgacaAATAATTGGTAGCCTTGCC
TTGGTAGTCATTAAAAAGCCCAAACAAATTAGGATTGATGAAAAAGAACA
ACCATGAATAAACCTACAAAAACTCGTCCAAGCTATCAAGATATCAACCT
TCCCGAAAATTCACTTATTTCGAAGATAAATCTATCAGTGCTAAGATACA
TCCCtctctcacagacccagtggataaaaattcctattgaaatctaATTG
AAATCCTAAtcgggatagaaattttattgttccaaggttaaaaaacgtag
tgggatggttttggagtacaatttttaaacatggaatttcgattAGGGAT
GAAGGTCCCAGCGGATCTGTGACACAGACAGCGTTAAGATTTGAGATTTT
CGAAATACTGACCCTATACTATTACTGaaagaaaagttaagaacaattag
CAAACAAAATATCTTTCGTTCTTTATTCCACAGAGAAACCAGAGAGTACA
TCAAGCACAGGAGATCCAATTCTCATTCATGACGACAAAGTGGATGCTGA
AGAAGTTCATCGCATCAAATACAATCTCACTCATCTGACTGAACACGTGG
TAAGtgtgttttgatgttttgatgaCCAATCATTTTTTCATTCTCACCGT
TCAAAGAAGGTTGTACACATCCCCTCTggtatgttttgatataggggatt
tCATATAATTCTTGTTCAAGAGTTACCCCATTATTCCAagaggcaaactt
aaaatccgtaaatataaaaatctttaaagcgccgaaaatgCTATTATTGC
CATTAACCGGgtttagttaactaggctagggTTACATCAGCCCTCTGTGT
CATCTAAAATGAGCCCTGGCCAAGATGGGAAAAATTCTTCTTAGCAAAAT
TCCGACCTATCATTCAACTTTAAATAAACAAACACAGCATAGCACGACAA
AGATTTTAAAACTCATTATTTGACTTTTCTAGATAAAAGATTTGGAGGAG
AAGATTGAAGCACTCAACAAAAAATTGGTAAGCAAATCTTCCTTTGTAAA
GATATAGAAATGCTAagtaagaaaatgaagaaaaaaagaaaaatcctgAA
CACGACTAAACTGATCAGGACAATGAGAAATTACTGTAGACTAACTTACC
GCCGATACCATACTATCAAGGCTTTCACAAGTTCGCTGCCGAGctttttt
cagaaatcaaacATTCGAACTCTTGGAATTTGATCGAATGTTTGAGTTCA
AATGCCTTCAAATCGTGTACCAATCGACGCAGAATTTCACGTAGATTTTA
AAAATGCTAtaaaatgcaaacaaaaattCATATATTAAAAGTTTTGGCTC
TTTAAAAAGTGTCGCGACCAGAAACTTTCGAGTTTAgtccttttcgcgaa
agtaaatgtctttaaaatcaattcgtGAAAGTTTATTCTTGACCAggcga
aagtttgtacacctaaagtaAAGTACATCTAAATTGATAAAGCCATTTTC
TCTTGCAGGAAGCAAAAGCGATCGAAGGTCCACAGGGACCAGAAGGACCG
GCCGGGCCACCAGGCTCCGGCGACTTCAGTAAATGTACAtatgaagagaa
aaaaacatttggaTCAAAAACAGTTGCTTTCACAGATACAAGATTTGTAG
CAGACGACAAGGTGAGTTTATTCGTCTaataattctttcatttttaagaa
atgAATAACAAAGAATAGCAAAAGATGCCTTTTACCTTTGACAGGCTTTT
TAGAAAAGTTCATTTGCTTTAGGTGTAAGCTTTTTTGTCTACCATGTGAA
AACCATTAACAGAGATTTCGTGTACTATTAACAAAATCGAAATTATAAAT
ATTCCAAAATGGTAGGAAAGAAATTTAACTGTTCAAAGACAAGAGGAAAA
CTTCGGCACCGTATCCTCCATCCGAGCCAGAATGTTTCCAACTCAGGTCA
AATTTTTGATAATCATGAGNAGTGGACAAAAAgattaaagaaaacaaaga
gCAAGAAATGAAAGAGATCATTGAACCAGATTTGTTCAGGTAAGTGGATT
TTTGATTCTATACTCTTTcctatagcctggatatccagaccgtaaactat
ttcaccgtctagttttttataatcttttctctggtttacggtctggtcca
atcAACGACCTAATAAAGTAGNgcgattttcgcgaattttggcccttttc
gcgaaagtaaatgtctttaaaaattctagaaagggccattcgcgaaagtt
tatgctcgcgaaatattcttgacaaaatagaaaatctgtaaaacttcNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatgataaaaaa
attaatgattttttgcatcattaaaatgtcattccgcgtgcaaaagtatt
tttttaagattagctattggttgatattgatcacatgacctaagttttgt
gaatatgttcttaatttcaagtcaaacttttaggcttaaaaatttgtaaa
cattgttaaaattataacatttgtatttggatagtgtttgtgttttttat
cttaagaacgcaccatgaacgcacgtttatttttttagttagagtctttc
aaaaatgtttatgttcttaaagaaaatgcgctgaaaagcgcaacagtgtt
gtcgaaaaatgttgaaaaatatcttgtgagaaagatgattaaaaatgcga
tctgaagtaagcaaaaaaaatcgaaaattatgtttatggtcagtagaaat
tcgatataattgattttacaccatttagagatgcttgtaaaaagtctaat
ttctttttaatatgacttacgcggacggtggaaagacggcaagatgaaag
aatacaaaatgaatagaaaacaaaagatttttaagagccATGGTATGAAG
TTCTTagtctatctattttattaagtcgttgttcaaactttgaacaaaaa
gtaacttttatgacactttttagcctgctaaaagactaataagtcaaagg
acaaatgtttcaagccaatccaagaagtatttgtccctctaagccatttt
ttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ATTtctccgttaaattcgcgaaagtaaatgttgtgaatttcgcgattttt
cgtcctcgcgaaagtttctgctcgcgaaagtttgtacgcctaaagtatat
tcttttcattttagaaTACAAAGATCATGTCCGTCACGTGTTCTCATGTT
GGAGCTCAAGCTGCCATTCTCAAAAGCAATTACGATTCAGTCAAAGGTCA
ACGAGAATATTTCTGCAGGTGCGCTGGTATCAGTGAACTTCCAGCCTTAA
AATCTAAAGACCCTTTATACATCTCATGTATAATTCACACGTGGAAGTGT
CCTAAAACAACGTAGTATTtttatataccttaagggaacttattttggcg
ggaactaaattttttggtattttgcctaGATAACTTCTTCagttcacaaa
aaaagcttcatataaggcaaaatagaacagatttacactgtcattcgcca
aaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054229TCONS_00054229Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054229-proteinTCONS_00054229-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:677870..683673 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.07	0.28	0.2	39.45	27.18	37.93	42.55	32.29	34.84	30.04	23.82	32.05	31.88	24.55	23.71	25.75	19.88	44.51	51.72	42.85	40.66	21.84	27.79	46.93	45.13	34.3	26.32	92.69	113.31