XLOC_034387 (gene) - C. hemisphaerica

Overview
NameXLOC_034387
Unique NameXLOC_034387
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_243:539014..546009+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034387 ID=XLOC_034387|Name=XLOC_034387|organism=Clytia hemisphaerica|type=gene|length=6996bp|location=Sequence derived from alignment at scaffold_243:539014..546009+ (Clytia hemisphaerica)
cggactgatttttttctcctcgcattgctatctaacttttatcatcaggt aggtccattcagcatctagcttgttttctttcaaactgatattttcttca aaattttagtcCCTGAATTGGCTTTTCAATTGCTGTCAAGTGCTCGTAAC AGCTGTGGCTTGTTTACTGTGGTCAAGTTGTGGATCAAGTAATTATTTAG CAAACATTGAAGATTATGTTCCTGGTTTAAGGGGCAATAGGTAATACTTG TGCATTCAATAAAGACTCTAATTTtctgaatatattttttcatcaagatt ttttttgaatttacgATATTGTTTTTGTCCTTCAGTCCTTCAATCTCTTT CACTCATCCATGTCATCTGCCGAACCATCCTCTTAGCTGTCTTGAATTCG TAAATTAATGTTGATACCAAGAGATCATTCGCCATGGCATTTTAGGTCCT CCAAAGGGGTCAATCaataatttgacaaatttttgcGAGATTTAATTTTT CGATATCGCGAATTTTTGTGTGTGATCGCTGCTGACTTGCggaattaaat ccacgcgaaatttttgatattgtatttttatcGTAAAATAGTctggaaat tttatattttaggtGTATTCAGGGCCATTTTCAACTAATTTTTAACTGAT TTGCGTTGTTAAATCCCAATTGATTCTTGAAAATTTATCCGATTAAAGTA ATAGATAATTTCAGCTCGTGAATATTAGCGAATTTTGAGTGGTTTCTACA TGGTAGCAACAAAAGAGAGCTAACTAAAGCGAACGGACTTATAATTTACT TATTCTATTTCATAGATGGTGGAAAGCTTACCAAGAGGCCCAGCAATTCC GATTCAGTCATTATTTTTCATGTTACCTATCAGAAGCGAGCATTCTTCTT GTTGGTATCGGTACACTGACGCCTAATGTTAAAAGTTCgaaagaaaataa gaagaaaaaagaacaaaccATTCAATGGTAAGGAAAATTGTGTCCATTCC CCCATGACATGCAACACTGCATTCTCTCTCAAAATTTGACTAAGAATACA TCATTTGACCAACTCATGAAATCGACCGCTGAAATGTCTTCATAAAATAA TGTAGCTTTTCTATCGTTTTTTTTCTACTCAATACAAAACATCAATTGTA ACCACTCACTTCTTAAAAAATGCTTTAATGTCAGAAGAAATTGCAAGGGT GCAtggaaattctgtaaaaagagaaaatttttccaggggATTCAGAGTTT TTCCCAATAAAATGATCACAAGTTAGACATTCAATTATTCAGAGATTATT ACTAAGCTCTGGTCCATTTTTTGTCAATGGACAGAATGTTACCTTCTTTC AATGCATTgacttttttcaatctttttcgaGCATAGATTTCGACTGCCAA ATTTCTGTCCATTTTTTGCCTACCCTAGAATAGGTTGGGCAGTTATTCGA GTCTAAACTAAAGATAATTGTTCCTCTATAAACGTAATTGTATCATTTGT TCTTTCACAGGAGGTCGCCAGTTACCAGTTTAATGATGGTAGAGTTTCCA AGATCTTTAGTGGATGTGGTTACGAATTGGAATCTACCGGTGCACTATTG GCTAAAGCAATGTATGTAAATATTGTATACCTTACATTCTataatttcaa ggctttttgaAGAAGAAACGGCTTCAGACATTTGCTTTTATGTTATGAAA GTCGATTTGTCATCTCTATCCATGAGTTTCACAAgcaaatttgaaacaaa attctATAACTTTGTTCCCTTTaaactgaaaaaaacaaccCTGTATCAAT ATTTTAGCCGGTTGAGATAAAATTAGTATATGTGATGTGAtatgatatca tgtgattacgaATTAATTGTACATTTTCGTTCatagtttttctttcttat aaaaggaatttcgaatgaaattaaaactttcgataaaaaaacgaaagaaa aacattaaacTCTATCTTGTAAACATTTGCCTCTTTGAAGGTTTaccaaa tgagaaaaaataaccaatcatgCGATTAAAGagcaaatggggatgaaata ataataatttataaTTGGATGGGGccttttatattttattgttttactGT ACtgctcaaaaatatatttagaaCTTTCAAAGCTTAAGTACCTTTTCCCA AGTGGAGATGAAACTAAATCAGGATAATATGtaatactagccggtacccg gcgttgcacgccggttaagctgtataGCTGACGCAATAAAAGTCCtctgg atgttgaagctggcttaaaaaacgatcaaatgaaaaaaaatctcttcaaa gtttgactctagccttcccccggagatctttttctcgcttcgctcgcatt aaatacgccATCCAGTTCtcgataatttgaaaaaattgtatgtcatagta aagaggagtgaaatgtagaaatgacaattcttcaggTGAAAGTGGGgaag ccacaaagaatagtgcaactctttgtttttatcagatttgaaaaaataaa taagtcaattctaaattcctttttttaaacccttgtcataacttttcgaa tttaaacatttaaaatgacgtacacagtttttaacagtatcgaacacttg aatgtttttatatgaagaaagaggtgGACTAATtttttctcttgcttttt atcgccctttgaatgctgttgttgttcgacaaacttttttaatttttatg ttttgatttacatttgaaatgttcttttctataaaataaaatgaaacttg ttttgttttgaaaagaattcgaatgtcattaataaatacgatcgttaaat acatgcgaaaacatttcaaacaaaagaaaagagaaaaaacaaaGGGACGG GCAACCCtagcagaaattaaaatttctaaatgtagatgggcctcaAATTT Cagaacaaaggctgaataaaatctaaaccaggctctatccgatctatcaa tcaaaacaaaaaacttatcgagaacaaaaacattgcttgcgaaaacgaaa gtgacacacaggaAACAGACATTAATATATAGATGACATTATTTTTCCAC TCGGTTGGTGGTTTCGACGCGTGTTTGAGACACAAATTGTTCTCAGTGTT TGACTATTTTGTATTATTTAATTTTCCTATTTTGATTCCCAGACATATTC AAATCCACCAGAAAGTACGGGGTGTTTGCTGCAATCTTAATCACTTACGT TGCAAGCTCCATGTTACACGTAAGTAGTTTTCTTACGAAAATTAAATCAC TCTTCGAGACTTCTTATGTAAGCAATATTTCCCAATCGAAATGAATCAGG ACCACCGTGCTCTGGTAACGACTTTCGGAATTCACAATTCTTAAAGCTTG AAGATATAGATAaatgaaaagtgatttttttaaagggCTGTAAGATTTTT GGGCCGGCAGGTTTCAAGGTTAAAAGTTTTGAGACGTATAAATAAGAAAA CAACCTATGGGGCCCTTATGATTAATTTTGACCTTGAAATTGACTATGGA CCCACCTCCATAgtcaatttcaattttgctCGACTAGGGCATATGATTGA CACTGCTTTTAGTTTCACGAGTGAAACAACTACACATAAATGTCACTTAT AACAGAAATAAATGCGACCAATTCGCTTTCCAAGCTACGTGAATTACAAT TGATGCACCCTTATTCGAATTTTCTTGCTTAGGATTCAgcgttttaaata ttttatgcATATATTCAATTTTGTAATGAATCTGACTTTGAATTTATGTT TACAATCACTGATCATTATATCAAGCGATACtgcttttttaggctttcaa cTTTCAATTATCAGCTGTTCTTCTCTCCATTGGCATTTTCGCATACGTTG AAGCAAGTAAGTTGTCCTTTTCTTCCACAAAAAATCGTTTGTCCATTCTT AAACCATGCGATAGTATCCCATTTAATGCCAATTCAAGTCAATGTTTACC ATTTTGAAGCCTGTTAATGGTCAAGTTTGCAGTATGTGACGTTATTTACG ACCCTTTTTGGCGTAAGCTCGTAATTTGGTAGTGACAAATTAAGGGCTGA CGTAAAAAGGGTCAGCGTTAACTTAGGgttggcgtaaaaagggccgaaaA GGTATTACAAAATAGGCTCATTTAAAGCTTTTCGTAATGAAACTCCTGTA ATATACCAACTTCAGTTTACCAtttaataaacattgaaactttttaaaca tAGTTTCCTTTTTCTCTCCGCGATGTTTTATCGGGTAAATTTTTCTAAAG AGTTTTCTGCAAACTAGCAACTTCGTATTTTAAATTGCTAAATATTGTCA TTAGAAAAATTCAACTCTCATCGATAACTTCTCTAGGTTTTAGACATTTG TTGGCAGTGTGGTTCAACGCTTGTATCGAAGCAAGAAAGTGTCGCGGGAA ATGTACGCACAAGTATAACAAGGTTGATAATATTATTCAAGCATAAGTTG TCACTATTTCGAAAACGAAATCTACTCAATTTGAAAGTACTACTTGACAg gatttccaatttttaatgaGCCCGAAAAATTTAAGATCAAGTTGTTCCAA TATTCTTAGAAGTATTCTGGTATCTTAAAGCGAAGGCTTCTCTGCTTTTC TGAGGTTCCGATGGTGGATTGGTGGCCGCACACGCTAAATATCTATATGG AACGGGCAGATCTTTCATCGAAAAGCATTGGTAGTCGCCTTCTGTTGTAT CACTATCCGCAGCTCATACccataaagtgaaaaaaactgtACAGTGATAC CCCCTAAACGAAGGCTGGGTAACCAAACCCCCTCCCTCGTTTTTGTTTCG TGATCAGGCCAAATTGTGTAGTACAAACCTTCcaaaagttaaagattttt ccgtCGAAAGATGATTTTTTTGCCCGTTTTATGAGTTTAAAGAATGATTT AGTTAATCAAGAAGTTTTGGATAATTTAGATCAAAGAGACCTTCGATATC ATAGATTATAGCCCTGCaatacaactgtcaatcatttttaagaaaactga ttGGATGATTAATGTCACGTGGCCGGTCAATATTTCTCCATAGTGACCAG TTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNgggggggggggggcggcgTTTAGTGACATAGGTTAA ATAAtgacgccccctcgaataaacactcctcctaaaattcaataaacgtc aggggcgtttattcgaagcaATACGGTATTTCTTTCAAAGGGTATTATTT GAAACGCATGTACATTAAGAGTAATTTTCTTTCAACCTTAGAATAATTTT TTCGTAATGGCAGTCAATTTGATGTTTTCTATGGTTGCTGTATGGAATCT AGCATATCTTGGATGTCTCTTTGATGCCTCCGAGGAAGAAGATAAGGTAA ATCTTTTCCTTTGAGTGAAAAAGTCCGGGGCCTGTTTGCTGACAAAAATT AGGGTCTTAAAATTCGACCAACTTAAGTCGAATTTGGGTAAATTGAAGCN AAAAAGTCCGGGGCCTGTTTGCTGACAAAAATTAGGGTCTTAAAATTCGA CCAACTTAAGTCGAATTTGAGCAAATTGAAGCAAAAAATCTACCTTCGAA ATgcatttttgaccattttgaccATATAAGGCCAAAAATTCATAATCTCT ATTGACCCTGACAGTGTATTTTGTTAATTTCTACTACCGCTGGTTAATAG TTACTTTCATTGTAGTAATTGGTCGACGTTCTTTTCCTTTCATTTCAGGG GTATTCGATGAAGCACGCTTTAAAGAAATGGCAGGGTTATAACTACACAA ACCATTTGGTAATGCTTGTAGTACTTGTCTTTCAAAAGCTATCTGGTTTA TTCGTAAGGACTGACTAGCTGTACATGTTTTTCAAAAgccttttttaaat tatttaattactaacaattttctttttttttatatctaTTTTGATATATT TAGAAAGGATATTGCTGGTAAATTGAAAAAGTTCTATAAGCCAGAAAACG GCACAGTTTTGACGTTCAGTACAAATAGAttgtcttttttcaaatttctt tataaTACATCCTAACGattcgacccccccccccccNNNCCAAcgctccc cccccccccccccatccaAACTTTGTTAGTTGCTTTATTAAGCCCTTAGA GGCTTATTCCCACTTTCAGTAACTTAATTGGACTGAGTTTTCCTGTCCTC CACCAGGGTGGCAAAAAATGATacatttgtttattattttaaattatttt tgggcTACATAATCCATTGTTTTTATTAAGTCTCTGTAATGATTTTACAA GGTatttgaattttagattttaatttttaagctTTTAAACTTTAAGTTTA AGTTTACTTTTAAGCTAGTATATACTATACAGCCGTTTCCTTATAAGATC ACTAAGTAAGCTCAGCTAACAATAAGACCCATAAACAAGTTAAGAACCAT TTTAGCTTTAGATAGGCACGTGTAATGCTCCTTTTAGGCCCCGATATGTC AATAAAGTAAACACTTTAAGAAGACCATTTATTTAAGTCTTGAAAGATTA AGAACTTGTTCAAAAAGCAGATAGAATAATATCAGTTACACGGTCC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054541TCONS_00054541Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054541-proteinTCONS_00054541-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:539014..546009 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73 2.48 1.99 1.56 22.3 17.36 13.89 14.92 12.47 14.96 11.63 13.96 6.98 6.54 5.06 5.02 5.15 5.84 3.84 3.86 3.75 3.51 3.45 3.16 6.31 6.55 5.05 4.05 4.7 4.28