XLOC_034880 (gene) - C. hemisphaerica

Overview
NameXLOC_034880
Unique NameXLOC_034880
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_253:788842..794238+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034880 ID=XLOC_034880|Name=XLOC_034880|organism=Clytia hemisphaerica|type=gene|length=5397bp|location=Sequence derived from alignment at scaffold_253:788842..794238+ (Clytia hemisphaerica)
CAATTCCGGGGTATTGGCCGCTTTATGCTTACACCTATATAAAGAGTGAA
ACTTCAACGTAACAAAACACGGAAAAAAAGAATTCAGTTCAAATTTTCAT
CATAgggaaatcaaaacatttttggaTACAATATTTTACTTCAGCAGGTA
AgatttataattttgtttggtTCTGGCGAAATTTGTTTGCCCATTTTATT
TCCAAGACCTGTGGATATTTCTGTGAAAAACGTGCACACCACTTTTCACT
ACTTCTCAATAAACATCATCAATACAACACCACAAACTGTTGCCATGACC
AATGGATTCGAGCTGAGAATTGTTTTAGAGGTTTGATGCGCCATGCAGTG
TTAGTCAAATAATCTTCCtttaaaaaatttaccaaattttgataaatttt
tcggaaagaaTTAGACGTAATGCTTAAAGAAAATATCGGATTGTCTGACC
GCGTAACATACCCAGTACCTATGCATAAGAAGTTCAGTttataacaataa
aaaataaatttggctCAAATTACAAACCCTTATCAACTGTAAATACTTAC
GTTTCATAAAACTACCCAAAATCGACGAAAGTTTCACCTGCTTGcaaatc
aaaattttcctataatattttctttttgaattttgttgatGCGGGATAAA
TTTTACTGAGCCAATATCAAATTATTGGTGTTGTTCTaagttgttttaaa
aatttatccGGGGcaattattttcatcaaaatttattacaaGAGATATAG
CTCTAAAAGTTCAAAGACTGAAAACTGGTGAAAAtcgaaaacaaattttc
ttttcattttttttctcagacAAATCATCTAAGACACAAAATAATTCGTG
GATGATATTTACAGCCGAAGTGATTTTCAAAGTTATGAACAAGTCTCAAA
CTCTTACCACTCTTACATTTTCTCGTAATTACTATCCGTTAAACAACTAC
ATTTTCTACTCTCTAAACAGCCGAATCGAACGTCTGGAGTCATCGTCGTA
TATCGTTTGGCTTACTAAATACTTCCTAATCTAGGGTACCATATTCGAAA
AATTGCATTCTTTCCAAATGAAGCTATCCGTTCATAAGctgtaaacataa
atttttctcctttttttctcATAGGATATATTGTGATGAACACCAAAGTA
ATTGTATCTTGTATACTTGTCGTTATACTGGCAAATTGTCAAGCACATTT
CCGTATCGGTAAACGTAGCAAGTTCGTAAGCCGTCAACGTCAAGCTGCAC
CACCACATAATGAAATATTGAACTTTCTTCAAAAAGCTGGAGGCTCACGA
AAAATCTGTCAACATCTGCTTAGATCGTCCAATTCTGGCCTTGAAAAGAA
CGAAGCCGGCAGTTATGTTATTGACAAATTACAAAGTGACGTCCAAGCCT
TGAAATCAAGTCATACATCAGCAATCACCAAGTATAAAGCTCTATTAGAA
CTCCTTGAAGAATATTGTCTACAAAACGCACTTAACGCAGCCTTGACTTC
AAACGAAGACGCCAGTCAGTCAGAAATCGAAGATGAAGTATATCGGAAAT
AAGATTTTTGTATAAACCTTGTGGATTTTTAAAAACAACCctgtgtaaaa
atattttttcatgttaCCTTTATTACGCCTAAGGAGTTATTCAGATTTTA
TATCTCTCTCTCAAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAAT
AATAACTTTAAAAACTTTgtataattaaaattttacttagCTTATCGACG
AAAATATAATGACACAATACCAATCaacaatttccaaatttttcatttaa
ggttTGAAGAGTATGACCAGGCCGGGGATTGAGCAATTGAACCCACAATC
TTGCGCACCGGAAACGAATATGGGACGTTTTCTCCGTTTCCCAGACAATG
TTTAAACTAGAGTAGCAAACTACTCtcttaattaatcatgtcagagggtg
GAAACATATATAAAGGCGACAAACGTTTGCTAGAATATGAGcagcgtagg
agaacgagcaaaagttggcgAGAGGctgctttcagcccttgccgccgaca
aaatttcttcttatACGCTTACCATAACTCCTACGCTCGCTTTTCCCGCA
TGACACCGTTCCATCCCGACAGGCGTACCAGTGTAAAGCTTAAACCCAAA
AATATGacgaaaataacaaaattttataCCGTAACTATTATATcaatcga
aagctctcaaaaaatatGTTGGACTTTTAAGAGGACAGAGACgtcaagaa
acttttttgtgataTTTGACGTACAGAATTGACGTTTTTCTCGTCTTAGA
AGTTGAGGTACAATGCGTTTGAAACTTCACTTTCTGTTTTAATATCTATC
TTAAATGTGCGTGACTTAAGGAGtactaatatattttttgaatcatTCTA
AGTGCAAGCCAAATAGGTAAATTTGTATTTGTTTTGAGTCTACATCTTTT
GGTTGAATCCCGGGGGTACTCGATTACTAAACGACGGTATATGTCGCAAA
AAATTGCTTTCAAAACCagatccttacagtgcagacCTTAAACagtaaaa
aggtacccttacagtgcattttaccgaaagtttctgacccttacaggtag
tttgatttcatatcttattttgctgaagccacctATAAATGAGCCTGGGA
TATCGACACAaagtgcaaaacaaatcaaaatgggtacGAGTCAAAACCAA
AAAGATatatcagatttttactgtcagactttCAACTCAGCAGTCttcaa
acacacccttacagtgtatccaactaaaaagaagacccttgttgtgcact
ctatcaaaagtacacccctCGGGGGTTGAATGTTTAACGACATACTATGA
ATATTACAGTTTATAATTATACACTACTTGTAAGCTACTGTGTATCTTTT
ACTTTTCTGCAATGAGGTATAAAGTGGAATACGAAAAGTAGTATATTCTC
TGTTTACTACAAGTTTGAGATGAATATCCGAATACTTTCGGAATCTCTTT
TGAATTCCCCTTCTGAGATGGGACATTTCGTCGTTGCTGAGACGTTATGT
TGCTAGGATAAAGGGACCGGCCAAGGaacacttgcgcgcgcttcaatcat
acttttcgagcaaagcttccaagCTAtgggtcaaaagaaaaataaagcaa
cTTAATTGGTGCGATCNGTTGCTGACACGTTATGTTGCTAGGATAAAGGG
ACCGGCCAAGGaacacttgcgcgcgcttcaatcgcacttttcgagcaaag
cttccaagCTAtgggtcaaaagaaaaataaagcaacTTAATTggtgcgat
ctgacgtaacagGCGtgcgagcgcgcgctacatttttatgacttaatctt
ttctccaagcaaaaaggcttgaagccaaaaagtgcgatcgcagggCGCGC
ATCGCAGGGCGAGCAAGTAGGGACGGGCTTTAAAAGTCAATGCAATTGTT
TTGAAGTTCAAGAACCAAATGAAATCATTTTCTGACGTTCTGCTAATGAT
GGATCAACCGTATACTAAGTTTTTGACGGCACAATAGAGATTTCTATGGT
TTATATAGGCTACAGTGAGGCTACAGGATTTTCACAATTATGCaaggaag
gggggggggttgccTGTACAAAATCAAACGCTTTCTTCATCAAGAAAGAC
GGAAGATACACAACTTATAACCAAACCTGAAAACACATTGTAGAATCTTT
TCCGATGTCTAAATATTTACCCGAGGGCTGTGCAAAGAACGTAATCTTCT
TATATTATGTAATCCATTGGCAGACTATGTACTCACATCGCAATAGAAAA
AGACTTTTCACCAGGTAGAGTGCTATGGGAACATTGTGATAGACACCACC
AATACCAATAAGGATAACGCTTGGATAGGGTTGGGGTTGCTCGGTGCACA
AAACTAGAGACTTcccgcgcgctacatttttgttttgaattttgttgatG
CGGGATAAATTTTACTGAGCCAATATCAAATTATTGGTGTTGTTGTaagt
tgttttaaaaatttaccCGGGGcaattattttcattaaaatttattACAA
GAAATATAGCTCTAAAAGTTCAAAGACTGAAAACTGGTGAAAAtcgaaaa
caaattttcttttcattttttttctcagacAAATCATCTAAGACACAAAA
TAGTTCGTGGATGAGATTTACAGCCGAAgtgattttcaaagttttgaagt
CTCAAACTCTTACTACCACAACACTTATATTTTGTCGTAATTACTATCCG
TTAAACAACTACATTTTCTACTCTCTAAACTTATACACTTATATTTTGTC
GTAATTACTATCCGTTAAACAACTACATTTTCTACTCTCTAAACAGCCGA
ATCGAACGCCGGGAGTCATCGTCGTATATCGCTGGGCTTACTAAATACTT
CCTAATCTAGGGTACCATATTCGAAAAATCTCATTCTTTCCAAATGAAGC
TATCCGTTCATAAGCtgtaaacataattttttctcctttttttctcATAG
GATATATTGTGATGAACACCAAAGTAATTGTATCTTGTATACTTGTCGTT
ATACTGGCAAATTGTCAAGCACATTTCCGTATCGGTAAACGTAGCAAGTT
CGTAAGCCGTCAACGTCAAGCTGCACCACCACATAATGAAATATTGAACT
TTCTTCAAAAAGCTGGAGGCTCACGAAAAATCTGTCAACATCTGCTTAGA
TCGTCCAATTTTGGCCTTGAAAAGAACGAAGCCGGCAGTTATGTTATTGA
CAAGTTACAAAGTGACGTCCAAGCTTTGAAATCAAGTCATACATCAGCAA
TCACCAAGTATAAAGCTCTATTAGAACTCCTTGAAGAATATTGTCTACAA
AACGCACTTAACGCAGCCTTGACTTCAAACGAAGACGCCAGTCAGTCAGA
AATCGAAGATGAAGTATATCGGAAATAAGATTTTTATATAAACCTTGTGG
ATTTTTAAGAATAACCCTGTGGATTTTTAAGAATAACCatgtgtaaaaat
attttttcatgttaCCTTTATTACGAGATATTCAGATTTTATATCTGTCT
CTCAAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAATAATAACTTT
AAAAACTTTgtataattaaaattttacttagCTTATCGACGAAAATATAA
TGACACAATACCAATCaacaatttccaaatttttcatttaaggttTGAAG
AGTATGACCAGGCCGGGGATTGAGCAATTGAACCCACAATCTTGCGCACC
GGAACCGAATATGGGACGTTTTCCCCGTTTCCCAGACAATGTTTAAACTA
GCCCTTTGCGTGCCGTTACCTTgtttttgtaccccaatccatttgccgag
gggtaattttttttagtaacctgatttgccgatgtcgtatataccCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00055425TCONS_00055425Clytia hemisphaericatranscript
TCONS_00055426TCONS_00055426Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00055425-proteinTCONS_00055425-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_253supercontigscaffold_253:788842..794238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.55	0.75	1.35	0.66	3.15	1.63	7.88	9.54	208.86	138.93	98.91	146.17	18.73	16.88	1.22	0.85	12.47	20.89	64.55	107.55	35.91	39.17	7.83	9.64	7.86	5.47	1.81	1.37	1.12	1.04