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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055425 ID=TCONS_00055425|Name=TCONS_00055425|organism=Clytia hemisphaerica|type=transcript|length=796bp
CAATTCCGGGGTATTGGCCGCTTTATGCTTACACCTATATAAAGAGTGAA
ACTTCAACGTAACAAAACACGGAAAAAAAGAATTCAGTTCAAATTTTCAT
CATAgggaaatcaaaacatttttggaTACAATATTTTACTTCAGCAGGAT
ATATTGTGATGAACACCAAAGTAATTGTATCTTGTATACTTGTCGTTATA
CTGGCAAATTGTCAAGCACATTTCCGTATCGGTAAACGTAGCAAGTTCGT
AAGCCGTCAACGTCAAGCTGCACCACCACATAATGAAATATTGAACTTTC
TTCAAAAAGCTGGAGGCTCACGAAAAATCTGTCAACATCTGCTTAGATCG
TCCAATTCTGGCCTTGAAAAGAACGAAGCCGGCAGTTATGTTATTGACAA
ATTACAAAGTGACGTCCAAGCCTTGAAATCAAGTCATACATCAGCAATCA
CCAAGTATAAAGCTCTATTAGAACTCCTTGAAGAATATTGTCTACAAAAC
GCACTTAACGCAGCCTTGACTTCAAACGAAGACGCCAGTCAGTCAGAAAT
CGAAGATGAAGTATATCGGAAATAAGATTTTTGTATAAACCTTGTGGATT
TTTAAAAACAACCctgtgtaaaaatattttttcatgttaCCTTTATTACG
CCTAAGGAGTTATTCAGATTTTATATCTCTCTCTCAAATTTAGCTTGGCA
ATAAAAGTTCAGCCCTGTGAAATAATAACTTTAAAAACTTTgtataatta
aaattttacttagCTTATCGACGAAAATATAATGACACAATACCAA Run BLAST on NCBI protein sequence of TCONS_00055425-protein >TCONS_00055425-protein ID=TCONS_00055425-protein|Name=TCONS_00055425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MNTKVIVSCILVVILANCQAHFRIGKRSKFVSRQRQAAPPHNEILNFLQK
AGGSRKICQHLLRSSNSGLEKNEAGSYVIDKLQSDVQALKSSHTSAITKY
KALLELLEEYCLQNALNAALTSNEDASQSEIEDEVYRK Run BLAST on NCBI transcript from alignment at scaffold_253:788842..790614+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055425 ID=TCONS_00055425|Name=TCONS_00055425|organism=Clytia hemisphaerica|type=transcript|length=1773bp|location=Sequence derived from alignment at scaffold_253:788842..790614+ (Clytia hemisphaerica)
CAATTCCGGGGTATTGGCCGCTTTATGCTTACACCTATATAAAGAGTGAA
ACTTCAACGTAACAAAACACGGAAAAAAAGAATTCAGTTCAAATTTTCAT
CATAgggaaatcaaaacatttttggaTACAATATTTTACTTCAGCAGGTA
AgatttataattttgtttggtTCTGGCGAAATTTGTTTGCCCATTTTATT
TCCAAGACCTGTGGATATTTCTGTGAAAAACGTGCACACCACTTTTCACT
ACTTCTCAATAAACATCATCAATACAACACCACAAACTGTTGCCATGACC
AATGGATTCGAGCTGAGAATTGTTTTAGAGGTTTGATGCGCCATGCAGTG
TTAGTCAAATAATCTTCCtttaaaaaatttaccaaattttgataaatttt
tcggaaagaaTTAGACGTAATGCTTAAAGAAAATATCGGATTGTCTGACC
GCGTAACATACCCAGTACCTATGCATAAGAAGTTCAGTttataacaataa
aaaataaatttggctCAAATTACAAACCCTTATCAACTGTAAATACTTAC
GTTTCATAAAACTACCCAAAATCGACGAAAGTTTCACCTGCTTGcaaatc
aaaattttcctataatattttctttttgaattttgttgatGCGGGATAAA
TTTTACTGAGCCAATATCAAATTATTGGTGTTGTTCTaagttgttttaaa
aatttatccGGGGcaattattttcatcaaaatttattacaaGAGATATAG
CTCTAAAAGTTCAAAGACTGAAAACTGGTGAAAAtcgaaaacaaattttc
ttttcattttttttctcagacAAATCATCTAAGACACAAAATAATTCGTG
GATGATATTTACAGCCGAAGTGATTTTCAAAGTTATGAACAAGTCTCAAA
CTCTTACCACTCTTACATTTTCTCGTAATTACTATCCGTTAAACAACTAC
ATTTTCTACTCTCTAAACAGCCGAATCGAACGTCTGGAGTCATCGTCGTA
TATCGTTTGGCTTACTAAATACTTCCTAATCTAGGGTACCATATTCGAAA
AATTGCATTCTTTCCAAATGAAGCTATCCGTTCATAAGctgtaaacataa
atttttctcctttttttctcATAGGATATATTGTGATGAACACCAAAGTA
ATTGTATCTTGTATACTTGTCGTTATACTGGCAAATTGTCAAGCACATTT
CCGTATCGGTAAACGTAGCAAGTTCGTAAGCCGTCAACGTCAAGCTGCAC
CACCACATAATGAAATATTGAACTTTCTTCAAAAAGCTGGAGGCTCACGA
AAAATCTGTCAACATCTGCTTAGATCGTCCAATTCTGGCCTTGAAAAGAA
CGAAGCCGGCAGTTATGTTATTGACAAATTACAAAGTGACGTCCAAGCCT
TGAAATCAAGTCATACATCAGCAATCACCAAGTATAAAGCTCTATTAGAA
CTCCTTGAAGAATATTGTCTACAAAACGCACTTAACGCAGCCTTGACTTC
AAACGAAGACGCCAGTCAGTCAGAAATCGAAGATGAAGTATATCGGAAAT
AAGATTTTTGTATAAACCTTGTGGATTTTTAAAAACAACCctgtgtaaaa
atattttttcatgttaCCTTTATTACGCCTAAGGAGTTATTCAGATTTTA
TATCTCTCTCTCAAATTTAGCTTGGCAATAAAAGTTCAGCCCTGTGAAAT
AATAACTTTAAAAACTTTgtataattaaaattttacttagCTTATCGACG
AAAATATAATGACACAATACCAA Coding sequence (CDS) from alignment at scaffold_253:788842..790614+ >TCONS_00055425 ID=TCONS_00055425|Name=TCONS_00055425|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_253:788842..790614+ (Clytia hemisphaerica)
ATGAACACCAAAGTAATTGTATCTTGTATACTTGTCGTTATACTGGCAAA
TTGTCAAGCACATTTCCGTATCGGTAAACGTAGCAAGTTCGTAAGCCGTC
AACGTCAAGCTGCACCACCACATAATGAAATATTGAACTTTCTTCAAAAA
GCTGGAGGCTCACGAAAAATCTGTCAACATCTGCTTAGATCGTCCAATTC
TGGCCTTGAAAAGAACGAAGCCGGCAGTTATGTTATTGACAAATTACAAA
GTGACGTCCAAGCCTTGAAATCAAGTCATACATCAGCAATCACCAAGTAT
AAAGCTCTATTAGAACTCCTTGAAGAATATTGTCTACAAAACGCACTTAA
CGCAGCCTTGACTTCAAACGAAGACGCCAGTCAGTCAGAAATCGAAGATG
AAGTATATCGGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055425-exon-scaffold_253-1491911889:788842..788988 | TCONS_00055425-exon-scaffold_253-1491911889:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055425-exon-scaffold_253-1510915933:788842..788988 | TCONS_00055425-exon-scaffold_253-1510915933:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055425-exon-scaffold_253-1575043694:788842..788988 | TCONS_00055425-exon-scaffold_253-1575043694:788842..788988 | Clytia hemisphaerica | exon |
| TCONS_00055425-exon-scaffold_253-1491911889:789966..790614 | TCONS_00055425-exon-scaffold_253-1491911889:789966..790614 | Clytia hemisphaerica | exon |
| TCONS_00055425-exon-scaffold_253-1510915933:789966..790614 | TCONS_00055425-exon-scaffold_253-1510915933:789966..790614 | Clytia hemisphaerica | exon |
| TCONS_00055425-exon-scaffold_253-1575043694:789966..790614 | TCONS_00055425-exon-scaffold_253-1575043694:789966..790614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_253 | supercontig | scaffold_253:788842..790614 + |
Blast
The following BLAST results are available for this feature:
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