XLOC_037953 (gene) - C. hemisphaerica

Overview
NameXLOC_037953
Unique NameXLOC_037953
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_340:107835..116513-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037953 ID=XLOC_037953|Name=XLOC_037953|organism=Clytia hemisphaerica|type=gene|length=8679bp|location=Sequence derived from alignment at scaffold_340:107835..116513- (Clytia hemisphaerica)
AATTTTTTTTATCAGGAAAATTTATGAGTTTATTTTTGCTGTATTTAGTG
TGAAATTGATTGGAAATTTAGAGATTTTTTGCTGTATTTAGTGTGAAAGT
GGTTGGAAAAAAATTGTTACGAGTGTATGGTATTACTAATGATGATAAAA
AGAAAAAGTTACTTGATCATTCCTTTTTTCCATTTTATTTAGAAAAAATG
TAATGACCTCAACACCACTAAAGACCGCCAACTCGTCAACTTTTATTGAG
ATAGACCAATTATGTTTCATTTGTGGTGTTGACATTTTTTCTGATGATGT
AGAAGCTCCAGTTTACTTTTTATTAAAAAACAAGACATTTGTCATCCCCC
TTTTAAAAGGGCTATCAAAATGGAAACCTTGGATTTTTCATAACAATGAC
ACAAAACTATGCAAAAAATGTAAGGACAATATTGAGTCAATACAAAGTCT
GGAAAAGAAATTAAACGAGAAAAAGAACAAGCTTTGTAATGACTTTGAAG
TAAATTGGTCCAACCAAGAAAATATTTTTGGGTCTCCATTACGTTTTAAA
AGATTGAGGGTACCATCGCCAAGCAAAAAATCCAAGAAAATTGCAAAACC
TTTGAATCCATTTCAAGTTTTAACTGCTCCCCAAACACAAACTATAACCG
CTCCATCAAGAATTACTATTCCTCCGTTAAAGATTCCATCGTTATCATTT
TTATCTCCTTCTCAAATTTCTTTGTTGCCAACTTTACAAACACTTGTTAC
GAATAATCAAATACCTTCATCATCAACCACAAATGTGCCTCGTTATCAAG
TTGTAAATGTGTTAAAGAATACTGATTATACTCATGCTTTGGTGCCAAAA
ACGCAGCATCCACCAATTCATCACTCGTCCTCAAATTTGGCTGATGAACA
ACTTGTTCCTGATAGATCTGATGAAACATTAGAGGTACTTACTTAAAGAT
AGTTGATTTTCTTGCAGTTACCTTAAGAGAACTTTTTTGCCAAATTTGAA
ATAGTTATCAAAAAGATTGAAAAGGCTTTTAGTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTT
GACAGATCCAAGGTATTATTATGCCTTTGAACTTTCATGTATTGAGGTCT
AGAAAAATAGTGGTCAAGACAAGAGGTTACCCCTAGCTTTTGAAAGTTAC
CTTCAAAATTCATAACACACACCTACTAAATTTCATTTAGATATCAATTC
GCTTTCCAAAGACATCTAAAACGTTTAAAGTCAATGCTATGGACACAATT
GGAATGGTTATAAAGTCGTTTGCAATGAATTCAATAGCTAGTGGTATCAA
AACCCTTATCAATAAAGCGGATACGAGAAATATTTTGTTACAAGAACTCA
TTAAGTTTCTGGTAGTAGAGATGCAGAAATATAATTTAAATGAAAATGCA
TCATTGCACCATAATGAACAATATTCTGTCATAAATGCCAGCATCAACCG
TTTAAACAATGAAAGTTCGGAAATTTGTCCTGCACTCACTTCCCTAGCAG
ATGGACTGTATGATCATGATCAAAATCAAAGCACCTTCTTCATTTCCTTG
CTACTGCATTCACATAATCGTTTACTTTCATCATTTGCATACAAATTTGG
TTATTTTTTAAGATGGTCCGGCCTCCGATCAACAGTAAGTCCTTGTTTCT
TAATCTAATATTATAAGGAATAACCAGCTATTTCTCATTATCAGATGTAT
CTTCTTAGAGTGGCTGGTTCTGAGAGCTTTCTGACACTTGAAACTATAGC
TAAAATTACCTTATCTATAATACCCTAATCTATAATAAATGCATTTGCTA
CTCTATCAGCCAAATCTCCTGAGTGATGGATAATTAGCTGGTTATTATGC
TTTAACACTACATGTTGTTATGAGGATCATGAAAAAGTATTTTATTTTCT
CTCTCCGCGCCCTTGTGTCTTTAATCACTTAATCATGCATGCTTAGAGTT
CTACCAGGATTTTAACCTTACTGCTAACAAAATCAAAATAATCTCAAAGA
TATTTGTGTAAAAGTAAGAAAATTATCCTGGTTTTATATCATAGCTTGAA
AGTGAGTGGTTTAATGTACTTTAAAGTCAAAAACGTTAGTTTTGACTACA
ACCACATTGACATTTAGCCAGGCTCTGTTAGTNGTATTCTGTCATAACTG
CCAGCATCAACCGTTTAAACAATGAAAGTTCGGAAATTTGTCCTGCACTC
ACTTCCCTAGCAGATGGACTGTATGATCATGATCAAAATCNCGTGTCTGG
AGACCATCTGCCTGATGTGCACACCGCTAGGCTTAAGGATGTCCCTATCA
GAGATTTTTTACCATCCTCTCATGATCATTCAATGATGAAAAGAGATATG
ATCCTTATTTGCACAAAGATACTGGTNCAATCGTTTACTTTCATCATTTG
CATACAAATTTGGTTATTTTTTAAGATGGTCCGGGCTCCGATCAACAGTA
AGTCCTTGTTTCTTAATCTAATATTATAAGGAATAACCAGCTATTTCTCA
TTATCAGATGTATCTTCTTAGAGTGGTTGGTTCTGAGAGCTTTCTGACAC
TTGAAACTATAGCTAAAATTACCTTATCTATAATACCCTAATCTATAATA
AATGCATTTGCTACTCTATCAGCCAAATCTCCTGAGTGATGGATAATTAG
CTGGTTATTATGCTTTAACACTACATGTTGTTATGAGGATCATGAAAAAG
TATTTTATTTTCTCTCTCCGCGCCCTTGTGTCTTTAATCACTTAATCATG
CATGCTTAGAGTTCTACCAGGATTTTAACCTTACTGCTAACAAAATCAAC
AAAATCTCAAAGATATTTGTGTAAAAGTAAGAAAATTATCCTGGTTTTAT
AACATAGCTTGAAAGTGAGTGGTTTAATGTACTTTAAAGTCAAAAACGTT
AGTTTTGACTACAACCACATTGACATTTAGCCAGGCTCTGTTAGTACAAA
GCAACCTGGGGGCTACTCTAAGACAACATTACTGTATTACCGTAGAGGTA
ATAAAAATATAGATGGAGATACCACTCCTACTATTCTATTGTATTATACC
ATTGATAGCAAACTGTTGATTTGGGAGAAAGCCATTTAAATTTTGCTTTC
GCTTATGGGAATAGTTAATCGAAGAGAATTTGAATAAAATCGTGCTACAT
TTTTAATTTATTCATTGTGTGATGACAGGTTTTATTGATAAAATATAAAA
CCTTTCAAGAATAATCACAGAAAATCGAATTTGAAATGTTCACTGGTCAG
AGAATCCTCGGCAAACTTTATTAATTTCTACATATTTACTAATCTTTCAA
CTATATTCTATCAAAATTTTGAGGCAGCTGGNTATATTATACAACTTTAC
ATTCTACAGACCGTTAAAAATTCTTCATTTATTTTAGGTTCCTTTGGGTA
TATATCCTCGCAATGAAAACTCAACCGAAGGCATGATAGAAATCATCGAG
GAGCTCAGCAAAAACTATGGCTTGGAGGATGAAGACGAATTTCTTTNTCA
CAAACAACAAAGAATTCGCAAAATTTGAAAGAAATTGTTAAAATTTCTAA
AGAGTTTTAAGTTGTTAATTTATGTAACTTTTATTACCTCTATGATAATA
CACGGGGGCTGTTTCTAATTTTTCATTTGCGCCCATAACCAAGGAAATTT
GTTCAAAAAATAAGAAATTTTCTTTTTTATTCTCTTTAAAGGCAATGTCA
GTTCTCTCACGTTTTGGACTAACAGTTCATGGTCGTAGTCTTACGAGAAA
GCTAGAAGAAATGGGAAAAGATTTTGACAAGAAAGTTATCCAATGGAAGA
TTGCACGGGACCGTTTTCTTACAGGCAGAAAAGCTTTGAAGTTCCTAACC
AAGTTCTTTACCAAGAATACTCCAATTGAAACAAGTCAAGCCGTGCTGCT
CATCAAACTTCTATGTCGAGAGGTTCAAATCGATGACATTAATGATGAGT
TGGCATCTAGATTCCTTCCTGCATTTGACGAGACACTGATGGTAGTGGCT
TCGCACTTCATTATGCAGATGAAGTCCCGAAAGATCACCCTGTCAAAACT
TGATGAGTTTTGCTCCGAATACATCGACGAACGTAGTTCTACCGTCGCCT
TCCATGAATCGCTGAAGAAAATCAAGATCAAACCGTGTCCATCTTTCAGT
CTGGGTGGCGACAATTGTGATATGCACGTCAGCACCAGACAAAAGAGTCT
CTCCAACCCAAATAAATCGTTCCATTGGTTTCATTCTTTTGCCATTTTGG
ATCCAGTGTCTGGAGACCATCTGCCTGATGTGCACACCGCTAGGCTGAAG
GATGTCCCTATCAGAGATTTTTTACCATCCTCTCATGATCATTCAATGAT
GAAAAGAGATATGATCCTTATTTGCACAAAGATACTGGTGAAACACCTTC
CAAGTCTACAAGAATTTAACGATTGCGTTTTTTGGCAAATTCCCCACAAA
TATTCAAAGGAACTTTCTGCCAAAGCTGTAGAGGTATAATTCGAGAACGG
TTGTTTCACAGTGACGTAATCTCAAACAAATTTTGAATTCTCAAATATTA
TACAACATTATTCTACAGACCGTTAAAAATTCTTCATTTATTTTAGGTTC
CTTTGGGTATAATTCCTCGCAACGAAAACTCAACCGAAGGCATGATAGAA
ATCATCGAGGAGCTCAGCAAAAACTATGGCTTCGAGGATGAAGACGAATT
TATTTTCATTGGTGAAGATCAGGTATGTATGTTTCACGGTGCGTTATACC
AGGTGTGCCAAAAAAATAGACGTAACTTTTTTCAGTTAGAATAGAAACTT
GAAATTTTACATGCGTCTTAAGCAACCTATTTCAAAGCTTTCCTGAAAGT
TTCATTCTTATAGCTTTAGTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTTAAAAATTCTTCATTTATTTTAGGTTCCTTTGGGTATAATTC
CTCGCAATGAAAACTCAACCAAAGGCATGATAGAAATCATCGAGGAGCTC
AGCAAAAACTATGGCTTGGAGGATGAAGACGAATTTCTTTTCATGGGTGG
AGATCAGGTATGTATGTTTAACGGTGCGTTATATGCCATTTTAGGTCGTT
TAATTCGAATTTCCACATTTTCCTATAAGAATTTAAAGAAGTTTTTTTGA
ATTTTTGTTTCGAAAACTTCAGGTGACTGAAGACCGGGCAAGGCACTGCC
AAGCAGCAAGGTGCGAAGAAGAATCTCGCGAAGACCGCCTCGAAAAATTC
TGGTTTAAAAACGAAGACTGGCACTTTGAAAGAATTGCCTACAAGGTAGA
CATAATTTGCTAATTTATTTACTCGATAAACTAAGTTCTTTACTGCATAT
GCTGTTGTATATTATGGTTTATTTTAATATGAAATAATTATATTTTCAGT
GCGTGTTGGACAAGCTTTCGAGCAGCAGATGTGCGGGTGACTCTGGTACC
TTTTACAGTAATGCTGTTAAATTAGGAAACAGTAACGCGACCACTGACGT
TATGGGAAGCCACTACAACAAAATAAAAGAATTCTTTCAAGTACATGTAG
GTTGTTTTCTTCAAGATAATCGGATATCCGTTTTTGTTACTAGATGGCTA
CTACTACTTTACTTTAGCAATTCCACCAGAGACATATTCTCAAAATTCTT
GACATCTAATACTTATACAATTCACAATATTTGAAATATTTTCCTTTTCA
CAGACATCTGCTATGGTCGTTGTTGCCTTCACTGAACATCTCGGAATGAA
GTCTGTGGACGACAAAATCGAAGTTCCTGAAAGACTTAGCTCTGTCGCTG
AACGTAGACGCTGGCTGTTCGGTTTGATCAACAAGATGCTTGAAAAGTTC
GTGCTTCCAGAAATTGACGAATTGACAAAAATTGAGGAAAGATTGTTTCA
AAAGGTTGCGTGTCAGCAGCCTGGGTGTTCATCCCTATTTACAACGTTAG
TTGGACTGAAGGCTCACGAAAAGAATTTTCATAAAATCGACCACACCGAA
AAGGCAGAACCCAAATTGGATGAAGGAGAAGATCCGGTGTTCAACTATGG
ATGTGTGAGCTTATCATATGGCCTCCTTCTGAAGAATTTGGGGGACGCAA
TTAAGGAAGGTGACGGAGAAAGGGTTGTTCGATGCTGGAAGTATTTTACC
TACGTATTCAAAAGCACTGGACAAGCCCATAAAAACTATGCTTTGGCTGG
TCTGCGATTGATTGCTTCAATTAAAGGATTACTGACACCAGCAAAGGCAC
ACGAACTTATATGGAACAGATTTTGTAATACGGCTGGCGGAATCGGGAAA
TGTATCCCGCGAGATTTGAGAAACGAGCATCTCAATAAAATTGCCAAGGA
GCATATTCGTAGTCTTGGTCATTCAAATATTTCTGACGATAATGTGGTAA
AAATGTCACGCACAATTGGTTGTATGGAGGACATAGTAAGAAGTTTTGCG
CAAAAAGAAAATCAGAAAACTCATAAAAAAAATCCTCATGAAAAGACACA
GCTTGCCCATTGCATCTCTGAAATAACACAGGCAAACATGTTCAATCATG
TGAGTGGTCGAGAGCTGAATGGTTTTCCTGATTTCAAAAGATCTATTTAC
AGTGGATTAGAACCAATTACACTCAAAAATTGGTTGGTTCAGTATCGCCA
CCAATGGGACATTGAAAATAGAAATATTTATAAATTTGACGACTAAATTG
TTTGGCATTTCTCTTTGTATTTATAAGAAAACTCTGCATTTTATATACAA
TATGGTTCATTTAATTTCTGTTTGTAACAGTGTTACTTTGTGTTACCTTA
AGGGAAGAAATTTTCGCGGAATTTAATTTCGCGAATTGGGGCGTAATTCG
CGAAATTAAATTCCGCGAAATTCGATTTTTTGTCTTCTTCTCTTATTTTG
TTGTTTTTGACCAGGTGTAACCAAAAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060329TCONS_00060329Clytia hemisphaericatranscript
TCONS_00060328TCONS_00060328Clytia hemisphaericatranscript
TCONS_00060327TCONS_00060327Clytia hemisphaericatranscript
TCONS_00060326TCONS_00060326Clytia hemisphaericatranscript
TCONS_00060325TCONS_00060325Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060327-proteinTCONS_00060327-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_340supercontigscaffold_340:107835..116513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31	0.22	0.26	0.44	3.33	2.86	3.37	3.87	2.36	4.07	4.51	3.61	5.78	6.01	1.76	1.38	1.48	2.26	9.22	8.42	2.66	3.19	1.59	2.16	2.74	4.39	8.98	10.12	12.93	13.44