TCONS_00060329 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060329
Unique Name	TCONS_00060329
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1459

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_340:111237..116513-

transcript sequence

>TCONS_00060329 ID=TCONS_00060329|Name=TCONS_00060329|organism=Clytia hemisphaerica|type=transcript|length=1459bp
aattttttttatcaggaaaatttatgAGTTTATTTTTGCTGTATTTAGTG
TGAAATTGATTGGaaatttagagattttttgCTGTATTTAGTGTGAAAgt
ggttggaaaaaaattgttacGAGTGTATGGTATTACTAAtgatgataaaa
agaaaaagttacTTGATCATTccttttttccattttatttagaaaaaatg
tAATGACCTCAACACCACTAAAGACCGCCAACTCGTCAACTTTTATTGAG
ATAGACCAATTATGTTTCATTTGTGGTGTTGACATTTTTTCTGATGATGT
AGAAGCTCCAGTttactttttattaaaaaacaagaCATTTGTCATCCCCC
TTTTAAAAGGGCTATCAAAATGGAAACCTTGGATTTTTCATAACAATGAC
ACAAAactatgcaaaaaatgtaaGGACAATATTGAGTCAATACAAAGTCT
GGAAAAGAAATTAAACGAGAAAAAGAACAAGCTTTGTAATGACTTTGAAG
TAAATTGGTCCaaccaagaaaatatttttgggtcTCCATTACGTTTTAAA
AGATTGAGGGTACCATCGCCAAgcaaaaaatccaagaaaattGCAAAACC
TTTGAATCCATTTCAAGTTTTAACTGCTCCCCAAACACAAACTATAACCG
CTCCATCAAGAATTACTATTCCTCCGTTAAAGATTCCATCGTTATCATTT
TTATCTCCTTCTCAAATTTCTTTGTTGCCAACTTTACAAACACTTGTTAC
GAATAATCAAATACCTTCATCATCAACCACAAATGTGCCTCGTTATCAAG
TTGTAAATGTGTTAAAGAATACTGATTATACTCATGCTTTGGTGCCAAAA
ACGCAGCATCCACCAATTCATCACTCGTCCTCAAATTTGGCTGATGAACA
ACTTGTTCCTGATAGATCTGATGAAACATTAGAGATATCAATTCGCTTTC
CAAAGACATCTAAAACGTTTAAAGTCAATGCTATGGACACAATTGGAATG
GTTATAAAGTCGTTTGCAATGAATTCAATAGCTAGTGGTATCAAAACCCT
TATCAATAAAGCGGATACGAGAAATATTTTGTTACAAGAACTCATTAAGT
TTCTGGTAGTAGAGATGCAGAAATATAATTTAAATGAAAATGCATCATTG
CACCATAATGAACAATATTCTGTCATAAATGCCAGCATCAACCGTTTAAA
CAATGAAAGTTCGGAAATTTGTCCTGCACTCACTTCCCTAGCAGATGGAC
TGTATGATCATGATCAAAATCAAAGCACCTTCTTCATTTCCTTGCTACTG
CATTCACATAATCGTTTACTTTCATCATTTGCATACAAATTTGGTTATTT
TTTAAGATGGTCCGGCCTCCGATCAACAGTTCCTTTGGGTATAATTCCTC
GCAACGAAAACTCAACCGAAGGCATGATAGAAATCATCGAGGAGCTCAGC
AAAAACTAT

Run BLAST on NCBI

transcript from alignment at scaffold_340:111237..116513-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060329 ID=TCONS_00060329|Name=TCONS_00060329|organism=Clytia hemisphaerica|type=transcript|length=5277bp|location=Sequence derived from alignment at scaffold_340:111237..116513- (Clytia hemisphaerica)
AATTTTTTTTATCAGGAAAATTTATGAGTTTATTTTTGCTGTATTTAGTG
TGAAATTGATTGGAAATTTAGAGATTTTTTGCTGTATTTAGTGTGAAAGT
GGTTGGAAAAAAATTGTTACGAGTGTATGGTATTACTAATGATGATAAAA
AGAAAAAGTTACTTGATCATTCCTTTTTTCCATTTTATTTAGAAAAAATG
TAATGACCTCAACACCACTAAAGACCGCCAACTCGTCAACTTTTATTGAG
ATAGACCAATTATGTTTCATTTGTGGTGTTGACATTTTTTCTGATGATGT
AGAAGCTCCAGTTTACTTTTTATTAAAAAACAAGACATTTGTCATCCCCC
TTTTAAAAGGGCTATCAAAATGGAAACCTTGGATTTTTCATAACAATGAC
ACAAAACTATGCAAAAAATGTAAGGACAATATTGAGTCAATACAAAGTCT
GGAAAAGAAATTAAACGAGAAAAAGAACAAGCTTTGTAATGACTTTGAAG
TAAATTGGTCCAACCAAGAAAATATTTTTGGGTCTCCATTACGTTTTAAA
AGATTGAGGGTACCATCGCCAAGCAAAAAATCCAAGAAAATTGCAAAACC
TTTGAATCCATTTCAAGTTTTAACTGCTCCCCAAACACAAACTATAACCG
CTCCATCAAGAATTACTATTCCTCCGTTAAAGATTCCATCGTTATCATTT
TTATCTCCTTCTCAAATTTCTTTGTTGCCAACTTTACAAACACTTGTTAC
GAATAATCAAATACCTTCATCATCAACCACAAATGTGCCTCGTTATCAAG
TTGTAAATGTGTTAAAGAATACTGATTATACTCATGCTTTGGTGCCAAAA
ACGCAGCATCCACCAATTCATCACTCGTCCTCAAATTTGGCTGATGAACA
ACTTGTTCCTGATAGATCTGATGAAACATTAGAGGTACTTACTTAAAGAT
AGTTGATTTTCTTGCAGTTACCTTAAGAGAACTTTTTTGCCAAATTTGAA
ATAGTTATCAAAAAGATTGAAAAGGCTTTTAGTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTT
GACAGATCCAAGGTATTATTATGCCTTTGAACTTTCATGTATTGAGGTCT
AGAAAAATAGTGGTCAAGACAAGAGGTTACCCCTAGCTTTTGAAAGTTAC
CTTCAAAATTCATAACACACACCTACTAAATTTCATTTAGATATCAATTC
GCTTTCCAAAGACATCTAAAACGTTTAAAGTCAATGCTATGGACACAATT
GGAATGGTTATAAAGTCGTTTGCAATGAATTCAATAGCTAGTGGTATCAA
AACCCTTATCAATAAAGCGGATACGAGAAATATTTTGTTACAAGAACTCA
TTAAGTTTCTGGTAGTAGAGATGCAGAAATATAATTTAAATGAAAATGCA
TCATTGCACCATAATGAACAATATTCTGTCATAAATGCCAGCATCAACCG
TTTAAACAATGAAAGTTCGGAAATTTGTCCTGCACTCACTTCCCTAGCAG
ATGGACTGTATGATCATGATCAAAATCAAAGCACCTTCTTCATTTCCTTG
CTACTGCATTCACATAATCGTTTACTTTCATCATTTGCATACAAATTTGG
TTATTTTTTAAGATGGTCCGGCCTCCGATCAACAGTAAGTCCTTGTTTCT
TAATCTAATATTATAAGGAATAACCAGCTATTTCTCATTATCAGATGTAT
CTTCTTAGAGTGGCTGGTTCTGAGAGCTTTCTGACACTTGAAACTATAGC
TAAAATTACCTTATCTATAATACCCTAATCTATAATAAATGCATTTGCTA
CTCTATCAGCCAAATCTCCTGAGTGATGGATAATTAGCTGGTTATTATGC
TTTAACACTACATGTTGTTATGAGGATCATGAAAAAGTATTTTATTTTCT
CTCTCCGCGCCCTTGTGTCTTTAATCACTTAATCATGCATGCTTAGAGTT
CTACCAGGATTTTAACCTTACTGCTAACAAAATCAAAATAATCTCAAAGA
TATTTGTGTAAAAGTAAGAAAATTATCCTGGTTTTATATCATAGCTTGAA
AGTGAGTGGTTTAATGTACTTTAAAGTCAAAAACGTTAGTTTTGACTACA
ACCACATTGACATTTAGCCAGGCTCTGTTAGTNGTATTCTGTCATAACTG
CCAGCATCAACCGTTTAAACAATGAAAGTTCGGAAATTTGTCCTGCACTC
ACTTCCCTAGCAGATGGACTGTATGATCATGATCAAAATCNCGTGTCTGG
AGACCATCTGCCTGATGTGCACACCGCTAGGCTTAAGGATGTCCCTATCA
GAGATTTTTTACCATCCTCTCATGATCATTCAATGATGAAAAGAGATATG
ATCCTTATTTGCACAAAGATACTGGTNCAATCGTTTACTTTCATCATTTG
CATACAAATTTGGTTATTTTTTAAGATGGTCCGGGCTCCGATCAACAGTA
AGTCCTTGTTTCTTAATCTAATATTATAAGGAATAACCAGCTATTTCTCA
TTATCAGATGTATCTTCTTAGAGTGGTTGGTTCTGAGAGCTTTCTGACAC
TTGAAACTATAGCTAAAATTACCTTATCTATAATACCCTAATCTATAATA
AATGCATTTGCTACTCTATCAGCCAAATCTCCTGAGTGATGGATAATTAG
CTGGTTATTATGCTTTAACACTACATGTTGTTATGAGGATCATGAAAAAG
TATTTTATTTTCTCTCTCCGCGCCCTTGTGTCTTTAATCACTTAATCATG
CATGCTTAGAGTTCTACCAGGATTTTAACCTTACTGCTAACAAAATCAAC
AAAATCTCAAAGATATTTGTGTAAAAGTAAGAAAATTATCCTGGTTTTAT
AACATAGCTTGAAAGTGAGTGGTTTAATGTACTTTAAAGTCAAAAACGTT
AGTTTTGACTACAACCACATTGACATTTAGCCAGGCTCTGTTAGTACAAA
GCAACCTGGGGGCTACTCTAAGACAACATTACTGTATTACCGTAGAGGTA
ATAAAAATATAGATGGAGATACCACTCCTACTATTCTATTGTATTATACC
ATTGATAGCAAACTGTTGATTTGGGAGAAAGCCATTTAAATTTTGCTTTC
GCTTATGGGAATAGTTAATCGAAGAGAATTTGAATAAAATCGTGCTACAT
TTTTAATTTATTCATTGTGTGATGACAGGTTTTATTGATAAAATATAAAA
CCTTTCAAGAATAATCACAGAAAATCGAATTTGAAATGTTCACTGGTCAG
AGAATCCTCGGCAAACTTTATTAATTTCTACATATTTACTAATCTTTCAA
CTATATTCTATCAAAATTTTGAGGCAGCTGGNTATATTATACAACTTTAC
ATTCTACAGACCGTTAAAAATTCTTCATTTATTTTAGGTTCCTTTGGGTA
TATATCCTCGCAATGAAAACTCAACCGAAGGCATGATAGAAATCATCGAG
GAGCTCAGCAAAAACTATGGCTTGGAGGATGAAGACGAATTTCTTTNTCA
CAAACAACAAAGAATTCGCAAAATTTGAAAGAAATTGTTAAAATTTCTAA
AGAGTTTTAAGTTGTTAATTTATGTAACTTTTATTACCTCTATGATAATA
CACGGGGGCTGTTTCTAATTTTTCATTTGCGCCCATAACCAAGGAAATTT
GTTCAAAAAATAAGAAATTTTCTTTTTTATTCTCTTTAAAGGCAATGTCA
GTTCTCTCACGTTTTGGACTAACAGTTCATGGTCGTAGTCTTACGAGAAA
GCTAGAAGAAATGGGAAAAGATTTTGACAAGAAAGTTATCCAATGGAAGA
TTGCACGGGACCGTTTTCTTACAGGCAGAAAAGCTTTGAAGTTCCTAACC
AAGTTCTTTACCAAGAATACTCCAATTGAAACAAGTCAAGCCGTGCTGCT
CATCAAACTTCTATGTCGAGAGGTTCAAATCGATGACATTAATGATGAGT
TGGCATCTAGATTCCTTCCTGCATTTGACGAGACACTGATGGTAGTGGCT
TCGCACTTCATTATGCAGATGAAGTCCCGAAAGATCACCCTGTCAAAACT
TGATGAGTTTTGCTCCGAATACATCGACGAACGTAGTTCTACCGTCGCCT
TCCATGAATCGCTGAAGAAAATCAAGATCAAACCGTGTCCATCTTTCAGT
CTGGGTGGCGACAATTGTGATATGCACGTCAGCACCAGACAAAAGAGTCT
CTCCAACCCAAATAAATCGTTCCATTGGTTTCATTCTTTTGCCATTTTGG
ATCCAGTGTCTGGAGACCATCTGCCTGATGTGCACACCGCTAGGCTGAAG
GATGTCCCTATCAGAGATTTTTTACCATCCTCTCATGATCATTCAATGAT
GAAAAGAGATATGATCCTTATTTGCACAAAGATACTGGTGAAACACCTTC
CAAGTCTACAAGAATTTAACGATTGCGTTTTTTGGCAAATTCCCCACAAA
TATTCAAAGGAACTTTCTGCCAAAGCTGTAGAGGTATAATTCGAGAACGG
TTGTTTCACAGTGACGTAATCTCAAACAAATTTTGAATTCTCAAATATTA
TACAACATTATTCTACAGACCGTTAAAAATTCTTCATTTATTTTAGGTTC
CTTTGGGTATAATTCCTCGCAACGAAAACTCAACCGAAGGCATGATAGAA
ATCATCGAGGAGCTCAGCAAAAACTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037953	XLOC_037953	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060329-exon-scaffold_340-1575043694:115580..116513	TCONS_00060329-exon-scaffold_340-1575043694:115580..116513	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1575043694:114280..114723	TCONS_00060329-exon-scaffold_340-1575043694:114280..114723	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1575043694:111237..111317	TCONS_00060329-exon-scaffold_340-1575043694:111237..111317	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1510915933:115580..116513	TCONS_00060329-exon-scaffold_340-1510915933:115580..116513	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1510915933:114280..114723	TCONS_00060329-exon-scaffold_340-1510915933:114280..114723	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1510915933:111237..111317	TCONS_00060329-exon-scaffold_340-1510915933:111237..111317	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1491911889:115580..116513	TCONS_00060329-exon-scaffold_340-1491911889:115580..116513	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1491911889:114280..114723	TCONS_00060329-exon-scaffold_340-1491911889:114280..114723	Clytia hemisphaerica	exon
TCONS_00060329-exon-scaffold_340-1491911889:111237..111317	TCONS_00060329-exon-scaffold_340-1491911889:111237..111317	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_340	supercontig	scaffold_340:111237..116513 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.227058	0.117536	0.0979112	0.377278	0.133175	0	0.00124171	0	0	0	0	0	0	0.286031	0	0	0	0	0	0	0	2.60551e-08	0	0	0	0	0.905129	1.82506	1.3405	1.19937

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060329 vs. Swiss-Prot (Human)

BLAST of TCONS_00060329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00060329 (transcript) - C. hemisphaerica