XLOC_038633 (gene) - C. hemisphaerica

Overview
NameXLOC_038633
Unique NameXLOC_038633
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_36:615765..626263+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038633 ID=XLOC_038633|Name=XLOC_038633|organism=Clytia hemisphaerica|type=gene|length=10499bp|location=Sequence derived from alignment at scaffold_36:615765..626263+ (Clytia hemisphaerica)
AAAAGACATTCAGCTTCAAAAGAAGATAATTCATTCAAAAAACAACAGTT
GACAAAATGATCAAGTTACTCTTAATTTTTGGCCTTCTTGGTCTAACATA
CGGGCAATGCCCAAGATATCCACACTGGCCACGTGAATTTCGATGGTCAT
ATGCAGGACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCA
TCAGATCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACC
AGCCTACATTGCAAGTGGTATGAGATGGAGTTACGCTGGTAAGTGATGCA
ACGTTTTTCAAATGTATTGTGAAATATTCTACGCTaagtttcttcttttg
ttttatatgAACAAAAGGGATAAATTTTCCGAAAACATTGTAATTATTTC
TTCATCTCACAACAGGTCCAATCTCTGGCATGAGATGCACACGAATCATC
GAGTTCAGCTCACCAGCCAAACACACATGGCGAGATAACTATCTATGCGT
TCCACATCACAGCCCCTTCATTTTCGAATGGTCAATGGCTGGACCAATCC
CTGGAAAACATTGCATACAATGGATTGAACCATCAGAACCGTTGGGTCAT
ACATGGCGTGATAACTATTTGTGTGGTACCGTGTTCCCACGTGCACGACT
CACCTACAATTAGTAATTTATACCTTTAATGTTAGGTAAACAATGAATAC
AAATAATTTCAAAGTATTgtattataatttttgattgCTCTTTCTGAATT
AAACAACCATTAAAGTCTATTGCTATGATCTTCTTTTATGTATCAAAGAC
TCTCCTCCAATCTTAGAGCGTCATAAATGcggaaaaagattaaaaaaata
ttcattcaatcatagtataagaaagctgcGGCTGTCTTATACTATGATTC
AATCAAAGGATACAGCTTAAAACTATGCCCTGGTTGACTTAAAAAAGGGc
tctttttgttgatttttgatgatttttgaagtcaacCATTGATGAACTTT
GGACTATATCTTTCGATGGAAtagattatttaaaaaatttttttcccatg
AATGATAttctaagataaaaaaaaaccgctcgtgtgaaaatgataattat
agcacgattattgaagaagttggttttcttcatcttcattttcaatcttc
attttccgatcttttttgagttttttcttcatgacaatattccactcctg
tttgtcttttcaatgagcacaaaatcgctacttaattcaaattctatcaa
aagttattgaggtttgaaaaaagactgccagctaatttgaaatagaCTTT
AATACAATCAACCCGAGGCCCGGGGAGGGTACTAGGGTTGGCGAATGAGG
AGTATGTGCGGACCAGGACCTCCAAAAACTGACCCTCAGAGGGACTAATT
TTTGCTGAAAAGAAATTTTTTTTTCGATTTTTGAAAAAAGTCATACCCTT
AGAGAGATTTTATTACAATTTTATTTTTGATTTTTGAAAAAAGTCATACC
CTTAAAGAGACTTTATTACAATTTTTTCTCTGGAAATCAAAAAATTTCCT
AAACATCCTGAATTTTCCGACCCTTAGAGAGAGACCCTAATTTAAAAACT
TTCTGATTTTTTCCAACCATTAGAGAGACTTTGAAAGGTGAAATAACCGA
TCCGTACCTGTCCGCACATACCCATCATCCATTTTTGCCTAATTACCCCC
CCCCTCCGGGACCCGAAGCTTCACTGCATAACATCTCAAATCATCAACAA
CAAATCTAATCCTTGAATTGACCCATAGAGGTCCCAATAGGTATAAATAA
ACATTCCGTAAAATGCCAGGACAGGACAGCTCAGAATAATGCTATGTTTT
CAGCCAAAATGTCCCCGTTGTTGCTAAAGTTTTTACCTGAAACCGACTAT
AAGGTCCAGAATCGAAGTTTGaagatttcaactcttattGGATTGGTGTT
TTTAATGAGCGACTATCGAAAGGCTAAGAAACTCGTTGATACCTTTTCTC
ATCGTCATGCTTATCATCTTATAGTTTATGAATGCGCATTAATCATTTGA
AGTAGTTCCTGGCCctacaaaatatgaaaaatagaaTCAATTAGGTCAAA
AATTAGACGATGATATCGGTACACTCCTGCCTCTGTTGACCTCACTGTCA
TCTCTGTAAAAACTCTTCTAAAAAAGTCCATTTGACTCATTGGACAAATC
ATTTGGTCCCTCTGGAATTTTGTTGCCCCactgaaaatgtttgaaatatt
catacataacaaaatcaaaatgattctaACGCACCCCAGTagaacttttc
tttcaaaaaatcacccTAATGGAATCTTCTCCTCTCAATTCGTCTAGAAT
TATTTGAAGGTGGAAATACCCAAAGAAAGTATCGAAATGTTTCACTTCAA
TGTACTGTCCAAACTTCTAtcgaaattttcacagtgtttgTTGTCGTAAT
AATCGACTGCTATCATTAAATCTCATTCCTTTTtatgagcaaatttgagc
tatTAAACCCTAAAATCCTAAGGTTCGAAGACtaaagtctcatgttaaaa
ctcagagttaaaactctactttccccaactgtagtttaacttGCTTAAAA
GTCATTTGTGGTgttaaaatttcgcagggaaattccctttgtcccaaata
ttttgtccacgATCTTTGCAtatatttgaaataaatgaGGTTCAAATATT
CTAATAGGTCTTTTCATAAATATACCCCCTGCTCACAGACCcgataggat
tttttcagcaagTGGGGATAAAATAAACGGaccgaaactcgatggggatt
tatATTCCCTTATGTTTTATGGcaggggatttcaattctttttttttcaa
taacacATTTCActgtagaaaagaaaatttctatccccattactTGAAAT
ATAAGCTGCGCTCAAGTCTAGTAAagagcactttcactttcacttttgcg
aaAACCCCGAAATGCACCAAAATCAACTATATCACTATCAAAACCATTGG
GTTTAAAGCCCGACACCCTATAGCCATAAACAATTTAGAggcgctctaac
ttaggtttAGGCATGAGTTTCAACGCTAGANtttggccaatttttccagt
tggcagggttcccagtgggtctgtgagaagggggtgtataaattattttg
agtgcaacgactgcctcAATTTGAAACCATTAACATGGCTATCAAATCCC
TTGAGTCttcaagtgatacttttataaatagagtGAACAAACTTCATGTA
AATTATTCagggaatcaattaccatagctatattttgaaaacgaggtaag
catTGCTCGTGagttaatttgtaaaaaaagtcTAGTGCTATGTTGTGAGT
TTTAAACCAGTTTTCGACTTTACaatataaaaatctttttgatagaTTTT
TCGCCTTGAGATGagtattttccaaagaaaattggAGTAGAAATTAAAGA
TTGGAgtatttaaaagtcaaattaagATTTTGCATTTATTGTCATCGACC
ATTCGAAGATGAAGGGGCTGTGATGTGGAACGCATAGATAGTTATCTGGC
CATGTGTGTTTGGCTGGTGAACTGAACTCGACGATTCGTGTGCATCTCAT
GCCAGAGATTGGACCTGTTGTGAGATGAAgaaataattataaattttttg
aagaatattttctgTTGCTAAGGAAGATAGTGACAGATTCgaaaaaagtt
atatttcaacgTTTAAAAAATGTTGCATCACTCACCAGCGTAACTCCATC
TCATACCACTGGCAATGTAGGCTAGTCCTGTTCTCTCGCAAAAGTAATTA
TCTGCCCATGTGTGTGGATCTGATGGTTCCAAAATTCTTGTGCATCTCCA
GCCATTACCAAGATGTCCAGCATATGACCAACGAAATTCACGTGGCCAGT
GTGGATATCTTGGGCATTTCCCGTATGTTAGACCAAGAAGGCCAAAGATT
AAGAGCAACTTGATCATGTTATCAATTGGTATCTTTTTTATAGTCTTCTG
AATTTTGCCGACTGCGTTAATCGATATTTTAGGAAAGTTTTAAAGCCCTT
TTATATACGATACGACCTTTCGAAGATCATACCCCCTGGTTTTATTCTTT
TGGAAGTTGAAGTACTCGTTATGGCTAATGCATATCCTTCCTCTAATTTG
AAGCTTGATTCGCGAAACAGCTTTTAAATTACAGGTTATTGGGCTTTATC
GTTTCTGTATTCTTTGTAAccttttttggagaaatttctaatatgaaaca
aaaacagGCCTTTATCATGCAAACGAGGCCAATTATTTCTTGCTGCTTGT
GATTTTGGGAatctttaatattttgaaaCCAGTATGCTCACTAAAGCCAT
TTGCGCTATGTAGTTCagtatttttcgtgttttgaagaGAAATTTATTAA
TTACTCTCTGAATTAGGTGTTTCGGTCGCTTGAATCTTTaggatttattt
aaaacttAAGTTAACTTAGGATTTTGGATAAAAAGCctgggggcactcga
tttctaaacaacggcatgtgccgccaaaaaaagGGCTTCCAAAATCGAAC
CTTTACAGTGCCACCCTCAGCAATGAAAAGATACCCTTACagcccttaca
gtgcattttacctttctgacccttacagtgtagtttgatttcatatctta
tttttctaaagccacctgaaaatgagACTGAGATATGTTGACACAATAtg
taaaacaaatgaaaatgggTGCGAGACAAAACTATAGAGATACCaaagat
ttttactttcaaacttGCAATTCAGTAGCTCCCAAagacacccttacagt
gtacccAGTTAAAAAAAGACCCTTctagtgcactctatcaaaagtacacc
cttacagtgcatttcgagggtcacgaaaaacctacccttaagggcggtcA
GACGATATTAGTGCCCCCCGGGCTGAAACGATACCATCATAATTGGATAA
ACGATTTCTGGTGAGAATTCGATTGACCACAATTTTCCTAAATGTCCTAA
GTTTAGGTTAAATAAGTTTAGGTCTTCCCGTGTGCAAGAGCCTGTGCAAA
GGTATTTTATGATTGAttattgttccttgaattaGAAGATCTGAGAGGTG
GGACCGAGGATGACCGGTTGTGaccacccgttgccatggaaactgacgtc
attggttactatggcagtCTACGAATTGGAATTTCCAAACACACAACACT
TGAATTtcgaataaaataaaaacattcgaattttgaataaaaacactatA
TTTCTAAATGAATTGAATTCacattcaaaaattaaaaatattagcctttt
tgtctttttcgtGAAAGAAAACTTCCCAAACTTGGATTTTTCTACACACA
cattaaaattttaagttcactttttctaaaaaagtccGAGATAAAACTTG
CTAACTCGAAAACTTGTGAACTTAAAATAAattccgagttagctaactcg
aaaaaatttttgcgaaaaataaaattcgagttaattctaactcgaaaatc
cttttttgaaaataaaaaatcgaattagagtcaagtgacgtcattatttg
cacttttatgacgtcatagttttgctaactcgaaaattgctaactcgaag
ttttctaactcgaagattccgGGCCTCAATATCAAGTATTACTacgaaaa
catttgaaaattcgttgatattttcagtttttgcctgtggaaggttagag
ctTGGGGCACGCTCAGCCCAGCACGTTACaggcaaaaatttaaaatatca
attttggtcaataaactttttaaaaataattttcagtctttttcataata
atattttatgttcactggaAGGTATTTTTCTATTGCAAGGCCTCTACTAT
TACTAAAAGAATacagaaaatcttttgatttttaaggggATTCCATTCTG
TGAATGGCCgaattctgaaattttggtGTGGATTTTCTCAAACTCCCCCC
AACCACGCCAGATTTAATCCTCACCAAAATNGTTGGAGTGGATTTTCTCA
AACTCCCCCCAACCACGCCAGATTTAATCCTCACCAAAATAAATCCATAA
TCTCGAAAGCTATCAACTGGCGACATTATGAAATCTATCTGAAACCGCAT
GAGATGATATACAAAGTATCAATTTTCTTCTTTGGAGATTATCCAATTAG
ATATGGAAAACCTCATGGTCGCGAGCGCCTGATGTGATGAGGGGGTAGTA
TTTTGGAACAGAAACAAAATTTGCTTCATCACTAATTATTTTACTAATCA
TACTGCGAATTATTTACGCAGCTTATTAACTTAGTTAGTCTCTTATCAAT
GCCGGGTCAACGCTCTGTTCATCTTTGATCGTTACTTCacttaaacgttt
ttttataacaaacacccaacatttttgaagccttaggatgttcttaactt
tttgagctttaagcctaaaaatgttttcaacatgtttttattttcaccat
tttttgagtgtttttgtcCATTTACCTATGAAGCTCGGTGTTCTAGAGTG
CACAAAACCTTAAGATgtctttaacttgttcttaacattttggccttcaa
agccttatgttcttgtatagtttgttctttataaaatattgtattCGTTT
GTCACTAAACAGCAAACACAAGTCCATGTAACGTCCAACTGGAAAAGAAA
CTTCCCTCACTAATTCAAGGAAGTAGCTTTTTTGGATTGTAATGTTAAGG
TACAAGGAAGAGAACCACGGTGTGCTATTTTTAAACCAGCCATAAAGCAA
AAATGATACTTCTTTCAGAGGGGTAGCCAGGAGTTTCCATTTCAGGAGAT
GAGTTtgcaaaaatcttttgattaaaattctTTTCGCAACTCTCGTTGTA
AGTTATCTAGATACATGCGTATCTTTTTGTTGGTAAAAGTTCAAACAGCT
CAAAGAAGGCATTAGAAAGGTCAAACCAAGGAAAAGATACTCGAATTCCA
TGGCTGGAAAAATACCAATTTAAGGTCAAATCTACCCTGGATTTCttttt
gcttgattttctaagaAGACTGGAATTTAAATAAACGGGtgttaaaattg
ttcttttccaGCCTTTCAACACAAAAACTCTTGTCTGGAATTTCATTTTC
CAGGTGGAAATTTTCCAGGCTGGAAAACAGTAAAATTCAggtgtgatttt
tttgtcattattttcaaaaaaattagtgACTTGAAAATCCAGCCCTAATT
AGATTATTACTTTCCAGGGTGGTAATTTTCCGGTTTGGAAAACAGCCAAA
TTCAGGTCTGATACTTCTTGATATTNGGTGGTAATTTTCCGGTTTGGAAA
ACAGCCAAATTCAGGTCTGATTCTTCTTGATATTGGTcaatacactgata
ctgcagtaacttagagacagtaaaggcggtatttactctttcaataatta
gtaaaagtaggtagttctaaaaatattttctgcagcatcgaacgattgaa
aatttcaggcaatctaggcattctaaattttaaattttttcttgggcgaa
actcttggaacgctgcaccgggtacggcaggtacgttgcttgccgtacca
tatttttctttttgccaacaaatggtcagtcttaaaggggaattaacgtt
tggaattaaccctgtgattttttttcgaaatattaaagaggaagaaaaat
gtgatcgaacaaaaaaagaaccacttcaaaatgtcttttattcattgagt
tatttaatctttaatttttcacaattttgacNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTCGTATCCATAGC
AACACAAGAGAATTTTCAAACAACTCTTATTCCGGATGTAGAAGAGTAAA
GCCCTATAAACCAAATATATTTGAAATCGTCTCAATGAGCTCTATTCGAA
TCTGTCAtttgtttgttgaaaaatttgaaacgttaattcccctttaaata
aatcaaaaattgtgtgaccaaacaaggcatacttggctaacaatagcgta
ttaaggccgtttttcaataacaaaggagagcgaaaattgcCGAAAATTTT
TCACCCTTGCTTCGCTCGCcttcttattttccatttattttctttcctcc
gaTAGGGGAGGTTACCTTTAGATTCCAcgtcctctagttgcaccacagca
ccacctctatgaagcctgtgttgaagtctacggcttctcagaccatgatt
ggcccaaacctcgattttaaattaGTTCTCaaataaaagacatcttacgg
gtctgcgaggaagaaattattgggggaaaggcttaattttgcatttacct
cccgtaacaagcaagtaactttggcgcggtAGACCTAAAATgttgcttta
tgaaagctcaaaaaaaaactttatatattggcgaaaatgtttggtataag
aataggcCAATTTGtataaaagagaccataaaaaggttaaatttagccca
ataaggtcacactcgtttaaccaaagatgtaaaagcaaaattggtgcgtg
aacgtgaaaatgtttttttttcgcgcgtgaatacgtgaattggcaaaaat
ttgtgcacgaatacctgaattgagggttgactggggggcctcGTAAAGTA
CgagacttgtttgtacagtttctaatttgttttatATTAGTCTCTCtcag
ggtcggaaaattcaggatttttaggaaattttttgatttccagagaaaaa
attgtagggtatgacttttttcaaaaatcgaaaaaaaggttcaccttttc
agcaaaaatcagtctttctaagggtcggttttcggaggtcccgtccgcac
atacccctcattcgccaaccctagtaccccccggggttactacacaatag
atttgataactgaaaattcattataatatcggtatcggtattaggcttca
ttcaccgacggtattacggtatttgacccaaaatattgtcggtatgacgg
tatttaagacccctgaaacccccccttcTAGGCTagattccaagccttat
tggagcagATTTGAGTTAAAACCTGACTTTCCAACTCTAGTTTAACacac
ttaaaaatcatttgttgtgtttaaaatttcactgGGAAATCacctttttc
tcaaatattttgtgtaGGATTGTAGCTGTCAGCTTCCTTTTCAATAAATA
TAACAAGATAAAGTAAAGTTTGTTTCTGTTTCAAAATGCTTCCCCTCCTC
CATGGTTTCTACGATTAAGTGTTCTGGGGAATTAACTGGCTCATTTCCAA
ACGAGCTAATTATTAATTGATACTTTTTTTATCATTCCATGCGACTTCCG
TGGGAAATGAAACAATACATTTGAGATAACCCCCTTGTCATAAGTTTAAA
AGATAATACATCTAACCTGAAATCGATAAAAACTAGGGGGTAGAACTTCC
AGTGACCGTATTGTATATAAAGGGTTCTCAAAAACATTGGAAAACAACAA
GCAACACTCAAagtgtaaaagaaaaaaattaattcaaaaagcACAGTTGA
CAAAATGTTGAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTAACATACG
GGCAATGCCCAAGATATCCACACTGGCCGCGTGAATTTCGTTGGTCATAT
GCAGGACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCATC
AGATCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACCAG
CCTACATTGCAAGCGGTATGAGATGGAGTTACGCCGGTGAGTGATGGAAC
ATTTTTTAAAcgttgaaatataacttttttcGAATCTGTTATCTTCCTTT
GCAAcagaaaatattcttcaaaaaattgacaattatTTCTTCATTTCATA
ACAGGTCCAATCTCTGGCATGAGATGCACACGAATCATCGAGTTTAGTTC
ACCAGCCAAACACACATGGCGAGATAACTATCTATGCGTTCCACATCACA
GCCCCTTCATTTTTGAATGGTCGATGGCTGGACCAATCCCTGGAAAACAT
TGCATACAATGGATTGAACCATCAGAACCGTTGGGTCATACATGGCGTGA
TAACTATTTGTGCGCTACCGTGTTCCCACGTGCACGACTCACCTACAGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061569TCONS_00061569Clytia hemisphaericatranscript
TCONS_00061570TCONS_00061570Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061570-proteinTCONS_00061570-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:615765..626263 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.8	0.35	0.14	0.08	2.77	2.91	11.2	15.72	167.57	54.03	188.49	371.97	257.16	234.79	199.84	190.36	75.21	63.76	30.98	37.03	0.47	0	0.13	0.09	0	0.15	0	0	0.16	0