XLOC_038820 (gene) - C. hemisphaerica

Overview
NameXLOC_038820
Unique NameXLOC_038820
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_361:860214..866719+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038820 ID=XLOC_038820|Name=XLOC_038820|organism=Clytia hemisphaerica|type=gene|length=6506bp|location=Sequence derived from alignment at scaffold_361:860214..866719+ (Clytia hemisphaerica)
TCTGGAGGCAAGAAAGATGCTTTGGAAGTAAGTATTAATCTTTCAGAGAT
TAAGGCAAAAAAAGCAGTTCAATTGTTATTTTGCTTATTATCAGTAAGTC
AGCTTTAAAATCAACTTTATCTTTGATAATTTTGGAACAGGGACACGGTA
CAGATTTCGGGCTAATTGCCTTGtcagaaaatataaatttcaatgtcaaa
aagagaaaaagaagacattatcTAGTTCAAATCAATCCAACCTTACTTAA
GTTAAGAATATTAGCCTTTCTAATCTTTAGAGaatcaaaatgaagaaaac
aattGTGATCATTGGAGGAGGAATCGCAGGCACCTCATGTGCTGAACACA
TTCTgcaatgtcaaaaatattatgACAATAATTCAAGCAGTGTTATCATA
ATCACTCCAAAAGATGTCATTAAAACAGCAATTACGAAGAAGGAAATTTC
AAGAACCCTCACCGAAATtgaagtaaaagaaaagaagatttcaaaatatg
atGAGGAAGGAACAAATCTCTCAGTTAAAGTTGGTACTGCTGTCCATATA
AACCCTGAAGGTATTACGCCTTGTATATTAATTTTCTgttatctatatta
taatactcttaaatcggaactctcctaTTCTTGCATGAAGTTTTTTCGTT
ATCAATTTTTAGGCAGACGGAAATTCTTTTCCGCGTCTTTTCTGTATTAA
TCCTTCAATTGGTCAATCTTCTGCCTTAAAATGAAAGCcgtgaaaatatg
ttttttttctaatctttatgaacattttcaagtgcactttgaaattgaac
actcattctgtttttctttttggacctaccccggtgggatggaggtccta
taaattacacgtttttttttctttaagaaactagttttccaaagcagcct
caatgtttcttaagaaatcggccttttgagccttaaatgtttctaacatg
tttctaaactttgtcaagcttaaaggacgcatgtcgataatacaatagtT
TAATTGACTAATCTACGATACTTTTCTGACtgtctcaagtgtttctaact
gttatgtatgtatatttctggaaccttgattggaaggttcttaaaaaaaa
cgaattaaaaaatgctattttctcattctcagNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctttgtccgttcgttcgt
tcgtccgttcgttcgttcgttcgttcgttattagctttcctcgtgattgg
ctcattagtttttttctgattttttgcacaaagatgtgtaactataaacc
ctttgATGTGACgtagcccgattttcgaaaaaataatttttgggcaaatt
tgggctaaaaaacgggttttttggactttgtgaaaatttttttgcatgaa
agtagggtaccatcataggtaaaatatggctcaagcagattttttccaaa
aaattttggtggctcaaaaaacgcatgtttatctataagaatcactatta
ttaagcatacatcaatgttcttagccaaattactcaattttttgatgaga
tagatttttttttttgctcacaaagtcttgaatatgaaagaatatttcag
aaTATTTCAATTAAGACATTTTGTCTACATAATTTTCCTTGAATGACACA
GAGAAATGTTTTAATTAATGTTCTATTCACTACACAAGAAAATAttgttg
ttcattttcctttgaaaatacaagaaatcgtTTACATGAGAAATATGTAG
AAATATAAAAGTAAAATACAGCAAAGCAAGCTTAATAATCATGGTGAAGA
GTCTTCTCGGACAATGCCGGGATAGGCTAATCTATTTTTATAGGGGTAGC
ATCATTCTTGGAATAATAGAGCAAAACATTTGAGGAAATCAAACAATTAC
TTTCACCATTAGTTCCTTGTTAAAGGTTTCTATAGCTATAAATACTGATT
TGAATACTGTCGGGAATATAATTAGCCATGATATCTAAGCAGTAAATTAT
TTTCctattttgatgtttctacTATTTACAGCTTGGTCTACCTAGATGCT
ATAGACCAGGGTTGGTAAATTTTTACCTTAACACACTTTTTGAAATGACA
AAGTATGCATGCTTCCTTCTGATATTGGAATGCAAATGACTTTAGGAAGA
CTGGCGGtaaagaatcataaaaaaaaagtatatccAGGCTAGGGGATATA
ATTATTGGAccaaaagctggtgttttgaattAACAGATTTGTAAAGTGGT
TAACTGTGGTCGAAATCATCGAAATCAAGTTTACCCCAAAAATATTTAAT
CATTTACCTTATCTGCCTAAGTTAGTTCTTTGAGGGTTCCATTTCTTATT
CATTTTCAGGTAAAATCATAACATTGAAATCAGGCGAGAAAATAGGATAT
GATAAAATATGTATTTGCACTGGAGCTAGACCAAATGTCATTGCAGAAAA
CCCTTACGTGATTGGATTGCGAGATACAGACACTGCAAATGAGCTGAGAA
AGAGATTGTCATCTGCAAAGAAAATCATCATTGCAGGCAATGGAGGTATT
GCTTTGGAACTAGtgtaagttttttaaaaatatttttatgataattattt
taactaaacaCAAAAGAAGATATATATAATTAAATTTTCATGGGTCGTTA
CCCGTACTGTTTTTTCTACTTGTACTTTTTATATATTGCACtatatcaaa
aatgaaaatggaacCCAAAAAGATGCACACTAAAGAGACACTAGCCATCT
AAGACAAAAAGAAACCCGAAAAGTGGGCCACACACGACGGGTGTCCTGTG
TAACCCGTTTTGATGACGGGGGTCTTACTTAGCCTGTTTTGATGACAGGT
GTCGCCTAGCCCCGTTTTGATGACGGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNGGTTACGGAGTAACCCTACACTAGAACTAAACATAT
CATGATGCATCCCAAATGACCTAATCTCTGGTTAACAGCCTTGCCCAGGA
GGAACCATGAGATCAGGATCCGTCGCAGCAGCAATCACCACGTTTGGATG
AGAACGTAGTTGGtaactaaaaaaagaaaaggaagaagcagAAAGCAGAA
CCAAAATTACAGGGGTTAAGGAGAGGGTGGGAGGGAAAGATTGAAGTTGT
GATCAATTGAGACTGAGCTGAACTGCGCTGAAAAGGGACTTGACGGTAGG
ATATATATATAGGCGAAGGAAAGAATAACCGGCAGCCGAAATATACTATT
TCATAACCGCCTTGGTGCGGTGGCGGGATATACTTCATTCGACTTGGAAT
TAACCTGAGCTAAGGTTTAGCTCCAAATAATTGTTCTCAATTTATTCGTC
ACGATTGACTGAGGAACCTTTCGCTTGTCGGCCAACAACTCGGATAGTCG
TTGATACGATAGAAACGAATGCATTCCAGTTATGTCTACTTAAAGAGCAC
TGTAAATTTTTAGGGAAGTTTGGGGAATGGTAATAAAAGTTACATCATGT
CATGAGAAATTTAATTTTCgttttctaaaatattgctactagtagagggc
attttgtaaaatcgctcgactgttttgttagaagcacttgttatacattt
ttggaaagctaaggggtaggggaatcgaaattattATGTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
tcccctaccccttagctttccaaaaatgtataacaagtgcttctaacaaa
acagtcaagcgattccaaaaaatcgaacaaaattccccctactataccGT
CAATCGTCATCAAAATATTACATTCTCATTACAACATACAATATCGAATA
ATTTCGCTATAGAGCGTTCAGTTATtatacattttcaaattttcaagtcT
TATCTTTTCTCGATAGAAATCCATATAGATCCTTTGGGGTCTTGAGACAG
TGAGAGAGGATCTGGGATTACTTCTTCAATGGTCTTAGAGCATGGCACAA
TACGATATTTGCTCAAGATTCTGCTGATGATTATCTTCACTTTCATGGTG
GCAAAACGTTGAGCAATGCAATTTCGTGGACCGTGACCAAAGCCACCATA
AGCAAATGGGTGTCTTTCTGCTTTCTTTTCACCACTGAAATTATCTGGAT
TGAAAGCTTTAGGATTTGGGAAGTATTTTTCATCCTTCACGACTGCTGGT
TGTGCGAAATAGACATAAACATCCTTTGGTATCACCATTTCAGTACCTGG
AACCTTGAACTCGTTGATCGAAGCGCGTTCTAGATGAGTCAAAGGATACA
TTCTCAAACTCTCTTGAAAGAATTGTTCCATGTAGGTCATATTCATAATA
GTGGTATAATCGGCCTGATCAGAACCTGTCGATTCCATTGTTTCTTGTAT
CTCCTGGTACAGTCGTTCCTGGTAATCCTGGTTCTTTGCAAGGTTGTACA
GCATCATGGATGCTGCAGTTGATGCTGTATCAAAACCTGCCAAGAACATC
ACCAACGAGTTTGCAATAATGATCCTCTCAACTTCATCCTTTTTCAGCTC
AGATTCTGGTTGCGTATCATTGGTAGACTCTTCTCCATCAGTGGTAGAGA
TTTCCTTCTTCAGAATATCAATACAAGTGTCAATAAAATCGTTTCGCTTC
AACCCGCTCTCTTGTCGATCCTTCATTGCTTTCAAAACAATTGCTGCAAA
GAAATCTTCAGATTTTCTATCTAAAACATCCATATCAAGCCATTTGAACA
TGCTCGGCCAAAACATATATAgcataaatttcataaaaatactaGGAGTC
ATTGTTTTCCCAAGCAATGTGTTGGCATTCGTTTTAAACATATTTTCAGG
CTCGTTGATGCTGTCGGATTCATAACCAAAGCCGGTAGAAACGATGACAT
CCAAAGCAAAATTCTTCATCAACTCTTTCCCTTCGATTTCCTGACCAATA
TTCTGCTCCAAGAAGATGTCACAATGATCTGCTATCTTATGTATCAAAGG
AACCATAGCTTTAAGTTTTCCACTGGTGAAGATAGGGGTTAAGGAGGATC
TAACGGTCTTCCATTGTTGACCACGCAGCTCTGTCAACATCATTTGAATG
TATCGATTGTTCTTTGAATGTGGACTGATTGGATTTTTCTGAAGAGGTTT
TCTCTCTATGAAGGTATCAAAGTTCTTCACCAGTACCAACTTTGCCAGAT
CTAAATCTCGAATAACGATATACGGATCACCCCATATTCCATAACACCCG
ACTAATGGAGCATCAGGGAAACTGTTATAAGCATGATCAGTTAGTTCAGC
GAAAGCAATTTTCTGTGAGAATAGATCCCACGTTCCCTTACTTCCAAAAG
GGAAGGTTCCAGGGTCAGATGGTATACCTCTTCGTTCCCAGAACGTCATT
TTATGTCTAACGTATAAATAGAATGCAGTAAATGCAATCACAAAACTGGC
AAAGACGATTTCCCACATTCTGTCTTGACAGATTGAATCTCTTTACAAAA
AAAGTTAACGGTCTCTTTTCTCGAAACCTCTGATGTGTTCCTCTTTGCCT
GTGTTGATtctgttttgaatgttttgattttttgtacacTTGTTGTAAAT
ATCTCCTCAAATTACATTTAAATGTCTTGTTGCTATATTAAAATGATCCA
ATAATTATCTCAATTGACAAATTCCATTTGTTGCTGGAACACAAATTAAA
ATGTTCTAGAACCTTTCCATTTTCTTTTAATCTTGCTCTGCTGTACAATC
TCTTCTCTCTTATGAGCAAATTTTACAAAACATAGACAAAttgatttaat
attttttcatcatgtttttttgcaaaaatgtcTAAAGCAGCATTTATTAT
TTATAGTTCGCCTCAGATTAGCTCACTCCTACGTTGTGATTCAAAATACC
TTTCAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061907TCONS_00061907Clytia hemisphaericatranscript
TCONS_00061908TCONS_00061908Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:860214..866719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31	1.72	0.91	1.29	45.81	36.66	27.85	26.82	33.9	28.4	67.14	39.06	24.12	17.51	9.79	11.79	12.67	12.79	23.28	29.41	27.36	27.36	15.11	19.62	19.53	19.31	14.9	30.33	7.95	5.83