XLOC_038980 (gene) - C. hemisphaerica

Overview
NameXLOC_038980
Unique NameXLOC_038980
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_362:219456..225315+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038980 ID=XLOC_038980|Name=XLOC_038980|organism=Clytia hemisphaerica|type=gene|length=5860bp|location=Sequence derived from alignment at scaffold_362:219456..225315+ (Clytia hemisphaerica)
AAATTTCTTTAGATAAAATCCAAGACAGAGTGATGTCAAACCACGAGGGT
TGTAATCGAACTCGGTCCCATGCTTCTGACAAACGGGTAATCTGAATCGA
CACCACTTAGTAATTGTAACCTTTTTTTCTCATAAATATTATTTGTTATG
TAAAGacttaatttgttttttgtaaCGCTGACGGGCGAATATTTCTTGGT
ACGGTAGTTATTCATTTCTTGGATAATCGGAAGAGCATGATAAAAGAACT
CATCAGGAATCTCGGAAAGTAAAAATACCAGCCTGAGATATTCTACAATG
GAAGAAGATTGAGTGTTTTTCAGTAGTTTACCGATTTTCCAGTCCGCATT
TCTCGACAACATCGTAAATCGAGTATTGGTGGTTTCGTCAAAGACAATAC
TGGAAGAATAACCCTACCATAACTACCTAACAACTAACTAATGAAAGGta
attaatatttttcttttgttcccGTTTAGGTGGGTAGAGATTTCGTCGGA
AATCTGTCGATCATTCAAGCACAATACAATCTGACGGTTATTCCTATCTC
TGGCCGAATTTCAGTTACTCTTCATTTTCGCCCGTTTAAAACTGGGCATT
TCCACCGTCTTAAGATTCAGCCGAATTTGAAGGACCTCGTTAAATTTCAT
CAGTTTTAAATCTAAAATGAAAGCCTGTCTTTAAGCACTGTTTAAGTAAT
CATAAATTGTCTTTACACGGTATGAAACGAATATTTTCTGCCCTGTTGAT
ATTAGCGAGATTGTGTACCTGTGTTTTTTTTCTGCGGCGGACACGGTTAA
GCTTCTGTGTTGTCTCGatcctgatcaactgaggaTGACGGTAAACAAGC
ACATTAGCCGGCCTCGATTTTTCAATACAGAACTGTGGATTATTCGGAAT
TACTTCATTCACTTCCGACCTAACTGTAGTTAAGGTTATTGCTGTGATTT
TTCTTGCTTCGAATCTGCCCACCTTTTCATAACAAATAAAAACTCCTACA
CATAGACACAATCTACAAGGCGCCACATAACAGTTACATTTAAATCTCCA
TTAATTGTGTTACCGGTAGTATGGCTACGTAGCTCAATCTTTgccgttgt
tttgtataagattcccattttcgcactaagattcttgtcactttcGGAAT
CTTTCCGCTACTTTTCGGGATTTTTCGAGATAaccggcatgagattggaa
agggtttgtttctacggaaaatcttgtgtttaactcacgaaactgcctaa
ctttctgaagcttatttttcaactacccgaagtcctgctcttttccgcta
gaaaagtgtTAAGTTCGGTTATGTATTTTTCTTTagttattttcagattt
tcaccTTATTATGCACTTAGGCAAGGTCTTGACTAGAGTGTTTTGTAAAA
GAAATTCATGAATTTATTCCTTCCTAAATATTTACCTAAGGTCATCTTTA
AAAGAGCCGCCAGACTTTAAAAATTTGTATTACGATTCTTTAAACGTTGG
CCCCTCAAAATGATAAGTTTACTAGAAAGACTCTCCGCAATTCGATCTtt
ctctacacgtttttttataagaacatcttgaaTCTTTGAAACCTTCGgtt
gttctaaactttttgagctttaataagcctaaaaatttaCTTAACATGTT
CATatattcaccattttgtgagtatttttgtaaaatgtttttaactaaat
gttcttaatattttggccgtcgaagccttatgttcttgttctaaaaagaa
cgtgtaattcgaatgaaaatgtttttgtcCTAAAAACCCGAATCAACGAG
AATAACACGATAAGCACTAATTTTTCCCCGGGAAATCATTTCTGTAAGTC
TATCTGTCTTCGCAATAAACTGCGAAATCACATGAGGTCAAATCCATAAT
TAATTGCATGGGGCACATTACTCTTATAAGCTTATTCATAATCAAACCTA
CATAtcagttttattttcaatacaGCTTAGTAAAGTACGAATAATTCTTT
TTTGGTGTTAAAATGAGGATGAGAACACTTATTTCGAGTAAGCCAAATTT
CGCGAAAACATGGAAAAAGCCAGCAAGTATAATCGAAGAAACGGTTGATT
GTAACAATGTAGTTATGCAACCTAAAGTTGCGTTTGTGGTAAGGAAGAAA
CATATTTAATTTTGAAGCGAGATAGATATGTTAAGTaggtttgcgaccgc
agtcgaggtcGACCCAAAGGCTCTCTTTTCtctagctatctacccgaagg
taggatttctccacttactcttaggtgccaaataaacgggggggttggaa
aattttcgaaattttaataaacggggggtacctaattgccggggggggtt
ggaaattgtacttctgaaaccccaaaaataaggtaaatataggctaaaat
caggctattaagagcaaaataaggggccttctctttgacagctgaaaata
ttcttaagaatTAATAAACGTGGGGGTCCttataaggtccggggggggtt
ggaaaattttcgaaaaattaacaagcgggggggcccgtttatttggcacc
taagagtaccctCCACCATCTTAGGAATCGTTGGTATGACCCGACTGcaa
caaccttgcgcaccgtagctagCTGGATGCTCTCATTTCATACTAAAGAC
TTTTAATTTGATGATTCTGGCGTTGAAAAACCAGTACTGTATTTCAaagt
tttggctgaaaaaaaatatatattctttTGCCATTTTTACTGAGAAAATT
GAAGGTCGCAATGAAGCTGCCTCTCATCATAAATCTGTATAAATGCGAAC
TCAAAACGGAAGTTTGATTTGCAAGAAATACAGAGGGATTCGATTCGTAG
AAACAGTGTTGTAATTTTTCCAGTTGAAACGTTGAATTTTCGAACATAGA
TTTCGAATGCTGCAAACTCGAAATTCTAgaggaaggggggggggttatgC
TCTATGGATAATACTCTGGCGGCGACagctttttcaaaacattttaaaaa
caatatattTTGGCGTTATTTTCTTTCACTTGACTTGACGTCATCTTGCT
TCAAATACGTATAAAAAACGGTGGCACTGAATCGTGGGGGACTTGTATAT
TATGACGCAAGGATCTCTTTTTATAGCTTTATTTGTAactcaaatttcat
gtttctgtTTGCGTGCGTGCTTGTAAGCCAAATGGGACCCCGGGCCCACA
ATTATATTCACAGTATATTGGTTGCTATGGTAACAAAGTAGCCCTATGCC
GTAAAGGAAATCTGAAACACAAAAGAAACTGTTTACGTTTTATAAGAGAT
AATAGCTTGTCCAATATACTGCTTTATCTTATTAATGGGGCACGGGACTT
CTAATTACCCCGTTGCACAAAACTTGTTTCATTAAAGTGCACAAATAGAA
TAATTAACGCGAattacacgtttcttttttataagaacataacgcttcga
cggccaaaatgttaagaacaagttaagaacattttaaggctttgtggact
cgaaacactcgatttcttaggaaaatgggtaaaaatggtcaaaaattggc
taaaataagaacatgttaagaacattttaaggctcgaAACCTAAAAAGTT
AATAACATCCAAAAGCTTCaacatttttggatgttcttctaaaaaaacgt
gtacacataagaaatatttttcacaatATTTTTCTTCCTTGTTGAGTTTT
GATTCATAATATCTGTGACAACTTACCCAGTACGAacgtgaaaagttttt
ttcgaattGCGCTAAAAGATGAAAAGAATACGGTATTTTTCTCGGAACAA
GAAAAGTGTGCCATTATGGAAGGTTAGTCTCAAAGGACAtaaattttgga
caattttagcCTCTCAGTGTCGAGGAAGAGAGAGCTTTAAATCTTGTGTT
CAGGGCCTAAAGAAGGTCACTGTAGTGTTTTGCTGTTTGGTGGGTTGAGG
AGGAGATCTAAATTGGAAAATCACTCAAAATATGTTTATCACAGAATTAA
AGACTGCATAAATTACCGGCTCAGAGGTAGCCCGGGTGTACTTGCTTAAT
GATCATTGActatagaaaatgaatttcgggtctttcatttttctttttct
tttttttttcagaacatGATCTCATCGGAATGTTCGTCTCATTTCATTGC
TGCATACCACGATCTACAACAAAGTAGTTGGGAGCCCAGCATCAACGATC
AACAAGCCAGCAAAGATGGTGATGGTGCTATACGAAAACAAAGCAAAGAT
GAGGTCATCAACGGTGCAgtaatgattaaaaacatcgaGAATATACCAGT
CATTATCGGCGATTTAAAAACAACCAATCAGAATCCACAACGTGAAGAGA
GCACCGATGACGTATTTGACAGTGACGAAGATACTTCTAGTCGTAAAGAC
CAGCCTTTAGCTTCTTGCGATGTTCCTTCGTTTTGGAAGAAAGACATGCG
AGATCGTCGAACGTCAATCAATGCCGATTTCCTATCCCCCATACGTATGG
ATCGATTAGATCGCTCACACAGGCGAGCGTCTTTGAACCCTGAAGGCTTT
CAGGGATTGCGAGTGTTATCAGCTCAATTACAAGATCAACGCTCAAATGC
GTCTAGTCGTAGTGAGAACTCAGTGATGGGATTTGATAGCGAGTACGGTG
GCAGCCAATCAAATGACAGCAGTGACAATGAAAGCGAACCGGAAGACAAA
ATCGATTTCCAAAACATTACACCACAATCGAACGCTCTGTTGCAACGTCG
GCGCCGGTTAAGTGGCGTCGACCCACCACCGGATCCTAAAATGCTAACCG
CCCATCAATCAAAGGTAGGAGCCCTGAAACCGCCCCTAACGAATCGACGA
ATGAGCGTAGATACCTATATGGGAATGAATGAAAAAACTGACAACAGTAG
ACCATCGCGTCGATTTTCAGTGATGACTAAAAAGACGAATTTACCGAAAA
TCGAAACTGGTGGATATTTAGTGAACCAAAACACTTTGAAAACTGGCTCC
GTTAGGCCAGTACCTGAACGGCGTAGTAGCGTCTCCCCTTCGAATTTTAA
CCATGATGCCCCAGTTAGAGACGTGCGTTTGAATAGACCAATAGACGGGC
AACTTGTGCGCCGTGCTTCTAGAGTAATATCAAAGGTTGAACAAGACTTG
ATTGagaaagaattaaaatttctgGGAATTACTAAAGACAAGAAAGACCC
TTTGGCTGATATTCGAAAATGCCGTTATCTAAGAATTAACCATGACCCTA
ACAATGATGATAAATGCCCGTGTAATAAATGTGAAAAAGAAAGCGGCACC
TTTTCGCCGAGATCTCGGTCACATTCCGGTTCCACTTGCTGATGGTATCG
TATGATTCGTTGGTTAATGTTTGAAATAGTCATTTTCGTTCTAGAAAATT
CACCTAAAAAGTTAGTTGTCAAAATTCTGAATTATTTCTCAGGTTAACGT
TTTTAGAAAAGTCTTTTAAAATCTAATACGTGACTGCTAGTTTCACACta
ctttcaattcttttttttgaaaaaactcaagGGCAGAAAGAGTTCCCTAA
TATCCCGcagttttcaattttaaagCCTTTTTATGATCGGAACTTCAACA
AGTCCTTTTTCGTTGCTATTCTCAATCGTGCCTTATTTTGTACTAAGGAG
ATAATCTAAAGACAATACTCCTTCCTTAAAATCAACTGGGCTAGTAGGAT
AGAAACCTCTGCACATTTATCTTTCATTCAAGTTTATGTAAAAACGTTTG
TATATTATTTTTGTtgtatgttttttgaaaaaggtaatTTGTGACTtgct
tttttgtaaaatatatgTCAATATCGGAATGTTCGAAATATACGCTTGGT
CCAATATCGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062169TCONS_00062169Clytia hemisphaericatranscript
TCONS_00062170TCONS_00062170Clytia hemisphaericatranscript
TCONS_00062171TCONS_00062171Clytia hemisphaericatranscript
TCONS_00062172TCONS_00062172Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062170-proteinTCONS_00062170-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:219456..225315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.97	0.9	0.29	0.21	24.05	17	28.42	28.59	21.68	68.08	18.93	48.74	3.31	2.08	0.47	0.65	0.62	0.98	0.17	0.37	2.87	3.07	1.78	2.33	4.12	4.23	0.33	0.65	1.12	0.96