XLOC_039644 (gene) - C. hemisphaerica

Overview
NameXLOC_039644
Unique NameXLOC_039644
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_385:433681..437799+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039644 ID=XLOC_039644|Name=XLOC_039644|organism=Clytia hemisphaerica|type=gene|length=4119bp|location=Sequence derived from alignment at scaffold_385:433681..437799+ (Clytia hemisphaerica)
GGAAACatttaattaattaaaaaataaaaaacaaaatccaTTAGGGAATA
TCTGGGAATTAAATTTTGACAATATAAAATCTGGATTTTGTCACatcttg
aaattgaaatggtAAAACATCTTGATGAGAACCAGACGGCGGttaaaacg
aaaacgaaaacgaaacgAAAAACCTGcagaagaacaaagaaaaatatcaa
cagcAAAGATAAAGCAAAGGTTTGTACTATTTTTTTCTAGCTTTTacgcc
cccccagcggtttttGGGAATGTGTGAATgagctttttcacttgcgtgaa
tgcacgaattagaaaagtttgtgtgaacaaaaattgcgtgaatttcgaaa
aaacattgcgtgaatgcttgaatttgggaaaacaacttgcgtgattgcgt
gaattgaaggtccgctggggaGCCTCTTTTACAGTGGTaggaataaaatg
aaaatctacaatcTCGTGTGGCTGTGATACTGATTTGATTGGTGAAATCA
TTTTTGTTCACTCGTTTTTAACAAGAACAAATAAATCTTTGGTGAGACTc
ggatgtttttattttcttggaaatttgagcatgaatttgtttttttttta
acctgttttatttttgtttttatttttttggtaattctgaacctcgttgt
tcttatagaaagaGTAATATTTTTTCCTAAAATTCGTAAAAACTTTTGTC
TTATGAGTAACTTGCAGCTTGCGaaagttattttttgtttttttttggtt
atCTGACCctcaaaaaaaaatctctctGACAGTCCTAAAAACATCCTAAA
AACGTATATTTCAAAAAACCTAGTGTATATGTAGtcaatctttttatttt
cagaaaatgtttcCACCTATCGAACAAGACCATCAACAAATCTTATTCGG
CGATCAATACGTCCCCGATATGAGATATCTGCCCAATATCAAATTGGAAC
CTTACTTCGAAACCGCCTACTATCCAACTTCATCCCATAGCATCGATTTA
AACACAACAAAATTCAACCCCATTGATAAAAACTCGTTCCATACCCCTTG
TTTTGATGGCTATCATACAACTACAACGAATACCAACCTACTCAACCTTG
GTCGGGAACCCTCTCCCACCCATCTTGGTCCTGACACAGACCAATCTTTA
ACACCCAACCTACCATGCGATACAGTCGTCAAACCACAAAAAATTGCTAA
GAAAACACGTACCCGTAAAAGTCGAAACAGCTCAACATGTGGTAAAGTTA
GATCCCGGCTCTCCTCAGACTCCGGTTTACCACGAGAAAAAGACCGGGCA
CGAGTTTTCAACGAGGCATTCGAAGGACTTCGTAAACGTATTCCCTCCAT
CCCTGCAACTaaaaaactttctaaaattgaaattttgagattggcAATTT
GTTATATGTCATACTTGAAGTTTGTGACAACTGATGATCCATTTCTGGTG
AGCGTCGACAAAGAATCTGCAGATCAGCTAAGCTAATGGGTaagtttttt
tatctttaacgtggttttttataagaacaaactatataagaacataagat
ttcgatggcaaaaatgtgAAGAACAagttgaaaacattttaaatctttgc
agactctaaaacacccgatttataaggaaaatagccaaaaatactcatag
aatggtcaaaataagaacttgttaagaacattttttaggcttaaaactca
aaaagttaagaacatttgaaggcttcaaaaatttagaatgctctcataaa
aaaatgtgtataagaacataagacttcgattgCTAAATATCAAGAGCGAT
AACAGCAATTCAAGGCTTTAAAGACTCTGGCCCAATTGACTCTTTAAGAC
ATTTGTGCTTAAAAATTCGAAACTTTTTAAAAGCTAATGATGAAGTAGCT
AATTTAAGCCGGCACTTTGAGATACTAAatatagaaaattttcaatttta
tttagatAGTCATAGTTCGgggcaacctcgttccctgcgcattatcagct
ttttgatgcctactgatagcgctagataataccctggcattggctggttt
tcgaacgcgtaagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNccccctctgagagggggaacttgcatcagcc
aacaccagggtattctctggcgtcaatcagtaacgtaaataaagcctggg
atacacggggacgaggttgagttCGGGGAATTTTTGTCTCATAGAAGTGG
TTTTTAACACCTTACTATGAgccgattttcaaaaatgtgcCTTAGAATCA
TCAAATCGATCATCTAGATAATATACGTAAAATAATTTAAACGATACTTT
TAAGATCATTTCTATAAGAACGTttaaatttggccaaaacctaacaACAA
ATTGTGAACAATCTCAGCTTtcctcgggtgaaacaaggtatgtcccaaat
atattttgcgtgacgcgcaccgcttccaattattccttaacgttcatata
tagctcaaaagaatcatatcaacgagcggatttcgaaaagtgctgggtca
aaaatttgcattaagccaatctcaagatatcggtcaaaaattgattttga
cgttaaaaaatacatcgaaaaaacacgtcataagtaagattcaaatgacg
tcattattgaaaaacagcgatagcttaaattttattaatgcaatcaacac
caaattttgactggagttgtaaattaatgattctgaaatatttgttaaaa
aattttcagaaaatttgaatgacgtcatttgttgtcgggaaaaattcaaa
tacgtcaaaatatgctgacgtcatcatgaattttcaaaatttttttcatg
aaatattttagaatcgttaatttacatctccagtcaaaattttgctttga
ttgtaGTAAGTTAATCGGAATTATCGCCTTTTTTCAATAATGACGTCATT
TAAATTGTCTTTTTGACGTGTTTTTTCGATGTATTTTTTAAcgtcaaaat
cagtttttggccgatatcttgagattggcttgatgtaaatttttgaccca
gcacttttcgaaatcctctcgttgatacaattcttttgagctatatatga
aagttgatgaataatgggaagcggtgtgcgtcacgcaaaatatatttggg
acatgccttgtttcacccgagtcGATTTTAAACGGATTTAAGACCAATCT
TAGCCTTATGTTAAGCAAACTaagcatgttaagaacatcagaagcgacat
ttaagcctaaaaatctcGAATTATTAAGAAGGGCCGAGTCTCTGCTAAAG
TTTcgtggttcttataaaaagcgtgtagaaagttttctttattttgattg
gctcaTAAATAGTTATTGGTATCTTTCTAACAAAGGAATGCAAGTTGAGA
TTTCAAAACATGACaaataaacattaaattttttaGCGGTCCCGGTTTTA
CGAGTCAGCGCTAAAATGAtatattgttgttgttttgaagTTTTAAGACC
GATGCAgaatttcttgaattttaaTTCTTGTGGCCTGGGGGCATGCCACA
GTATCGTAGACAAGAGggacgcaaaatttgtgtaggagagcagatctttt
tgacacagtaattatctatCCATAAAGGTCAGTAAGGTTATTCAAACATC
CAAATAGAAATAAACTTTGAGGCTCGTTtaatgaaatctttctttttgCT
CTCTTATTTTAGAAGTACGTCTTTGGTCCCTATTAGCAAGAAGATCTGAT
GTGTGATTCACAAGAGCTCCACTTATTTTTCTactataaaaatcaaaatt
aaaattattttctaaaaaactaaaaatataacttgtatatatttattttt
aaaataagatatttatattttattaggTCATTATTTATTACAAAAAGATT
ATTCTTGAATCAAccaaac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063261TCONS_00063261Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
HlhIE-2 Helix-loo-helix transcription factorTCONS_00063261-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_385supercontigscaffold_385:433681..437799 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12	0.37	0	0	326.55	238.45	4.65	5.41	0.7	3.82	0	0.42	8.66	4.11	0.05	0.15	0.53	0.35	11.32	10.96	0.2	0.29	0.62	0.3	0.18	0.32	0.17	0	0.46	0.33