XLOC_039724 (gene) - C. hemisphaerica

Overview
NameXLOC_039724
Unique NameXLOC_039724
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_388:17156..20854-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039724 ID=XLOC_039724|Name=XLOC_039724|organism=Clytia hemisphaerica|type=gene|length=3699bp|location=Sequence derived from alignment at scaffold_388:17156..20854- (Clytia hemisphaerica)
NNCTACAATCAACGAACGAGCTAAATGGCGCCATCCAATACGGAACACTA
AAGAAGGGGATTTAGTTGTCATCAGCGAAAAGGACATCCCAAGATACAAA
TGGCCATTGGCACGCGTTGTTAGTGTCATCACATCAGATGATGGCATCAC
AAGGATTGCAAAAGTCAAGACGTCCGACGGTTCGATATACACTAGGCCAA
CCGGTAGCCTAGGCTTGTTGGAAGACGGAACCTCATCCAATTGACGATTG
CCCTGTCATCGAGTTAAGCAAAAACATATGCTTATTACGTTGCGTTAATA
AATATCACCAATGGTACACCTTACGTTGCTAAGGTACTATCAACACAAGT
TCGTCCCTGAACTTGAAGTTATCAATTGTACACCTTACGTTGCTAAGGTA
CTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCATCAATTGTACACCTT
ACGTTGCTAAGATACTATCAACAGAAGTTCGTCCCTGAACTTGAAGTCGT
CAATTGTGCACCTTACGTTGCTAAGGTACTATCCACGAAGGTTCGCCCTT
GAACTTGAAGTCATCAATGAAACGCCTTGCTTTGCTAGGGCACTATCATC
AGAAGTTCGCCCCTGAACTTTGAAGTTACCATCAATGAAACAAGGCCCTG
TACCAATTGTTCGCCTTGTTTCTACAAAAGTGCTATCACCAGAAGTTCAT
TGAACGTGACGCAATCATCAGTCGTTCGCCTGGAACCAGGCATTATCATC
AGAAGTTCGTCTTGAACTTGAGGGAATCATCAGATGTTCACCCTACATCA
AATCATCAACTGTTTCAACGGTCATCTTCACAGTTCGCCACGAAATTTTG
GTACGACTACCACCGTGTTGTATATAATGAGCTGAATAGTCCGATTGATA
GACTGAATGAACTCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGAT
AATGTGCTTATAACTGATTTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGTACATTATTTTACCTAGTCGACATTTTTCTTTCATAGGCCTATGTAC
ATATTTTTAGTTTTTGAACTTTGTGTTTTTAGCTTGAACAACAATCAACA
AGATTCCTACGTTCCAAGATTTTTGACTCAACTATCCCTAACANTCCTAC
GTTCCAAGATTTTTGACTCAACTATCCCTAACATCTTCAAGAAAATATTT
GGGAATCAAGTGGACAACAATCAAGTTTTGGAGGACAAAGTTTTGGTGGG
ACAATCAAGTGGAGAACTTGGACAATGCTGAGAGGAAGAGACACATGTCA
GAGGTATACCTTAAACTTTGGCTTGGAAATTTGAAGATAGCTCACAATCT
TCTTCGTCTCTCAAGTCCTATCGTCTGGAAAATCGCCTATCGTTTGGAAC
ATACTCTCTCTGATACCCTCCATATTGTTTCCGCTACCCCCTCNCTATCG
TCTGGAAAATCGCCTATCGTTTGGAACATACTCTCTCTGATACCCTCCAT
ATTGTTTCCGCTACCCTCTCATTCGGAAAAGGCCGTCCGAATATCATCCT
CCAATCGCACGTTCGGAAATCGTCTATCCAACGCCCGTTGTCCTCCCAAA
TTTATCGTTTCCGGGATTCACTCTATCCGGAATTCTCTCCTACCGTATCG
TCACAGATACTCCATTTCGTTCAGANTTCACTGAGGAAGCACTTCACACG
TTCCTCCTTGAAGTTGAATCAACTATCAATTCGCGACCACTCACACCACT
GAGTGACAACATCAACGATTTTGAAGCTCTCACCCCTAACCACTTTCTAT
TAGGAAGAGCTTCACCCAATCTTCCAATCATTTATAACGCTCAACAAAAC
AACCTGAAGAGCAAGTGGAAGTAGGTCCAATCAACACTTGACGAATTTTG
GAAGAGATGGGCAAAGGAGTACCTACCTACAATCAACGAACGAGCTAAAT
GGCGCCATCCAATACGGAACACTAAAGAAGGGGATTTAGTCGTCATCAGC
GAAAAGGACATCCCAAGAAACAAATGGCCATTGGCACGCGTTGTTAGTGT
CATCACATCAGATGATGGCATCACAAGGATTGCAAAGGTCAAGACGTCTG
ACGGTTCGATATACACTAGGCCAACCGGTAGCCTAGGCTTGTTGGAAGAC
GGAACCTCATCCAATTGACGATTGCCCTGTCACCGAGTTAAGCAAAAACA
TATGCTTATTATGTTGTGTTAATAATTATCACCAATGGTACACCTTACGT
TGCTAAGGTACTATCAACAGAAGTTCGTCCCTGAACTTGAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGCTAAGGTACTATCCACAAAGGTTCGCCCTTGAACTTGAAGTCATCAA
TGAAACGCCTTGCTTTGCTAGGGCACTATCATCAGAAGTTCGCCCCTGAA
CTTTGAAGCTACCACCAATGAAACAAGACCCTATTGGGGTACCAATTGTT
CGCCTTGTTCCTACCGAAGTGCTATCACTAGAAGTTCATTGAACGTGACG
CAATCATCAGCCGTTCGCCTGAAACCAGGCATTATCATCAGAAGTTCGTC
TTGAACTTGAGGGAATCATCAGATGTTCACCCTACATCAAATCATCAACT
GTTCGACGGTCATCTTCACAGTTCACCACGAATTTTGGTAACTATTACCA
CCGTGTTGTACATCATGAGCTGAATAGTCCGATTGATAGACTGAATGAAC
TCTTGGTTCTTCCCCTTTTGGGTGGGAGTGTTTTGGATAATGTGCTTATA
ATTGAATTGTTTTGGTTGTGACGTATGAGCTCGATAATGACAAGATGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063392TCONS_00063392Clytia hemisphaericatranscript
TCONS_00063391TCONS_00063391Clytia hemisphaericatranscript
TCONS_00063390TCONS_00063390Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063390-proteinTCONS_00063390-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_388supercontigscaffold_388:17156..20854 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.75	2.7	1.56	0.83	9.11	8.7	5.71	6.4	3.23	4.56	3.48	4.75	1.01	2.29	0.57	0.93	0.97	1	0	0.74	1.52	1.23	0.75	1.08	1.53	4.3	1.83	1.23	0.74	0.84