XLOC_039749 (gene) - C. hemisphaerica

Overview
NameXLOC_039749
Unique NameXLOC_039749
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_389:64235..67692+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039749 ID=XLOC_039749|Name=XLOC_039749|organism=Clytia hemisphaerica|type=gene|length=3458bp|location=Sequence derived from alignment at scaffold_389:64235..67692+ (Clytia hemisphaerica)
AGTCAgggaaaatctttaaaaatttggtaTTACGATTAATTAGATTAGAA
GGAACACGTACCTGAACAAACGTGTACGACTTAGATAAGCGCCTTTTTCT
TACTCTTTATCTTTAAATTGAAGCGGGCAGCGGACTAACAgtctttttaa
gatattttaagTTATAAAACAAACCGCAAGAAACCCAGCATGGAGAAGGG
GTATTTTTTAATGCAGAATATGATGATCGatatctttttaaaattctatg
ttgggatttttgcgaatttccCCGTTACTATGGCCGCGCGCCCCGTTAAG
ACTTCCGTTCGAAATCGAAAACGAAACTAAATTCCAAAGTCCAAAATTGC
TGTGCGCGTAatatcaaaaaatcgaaattagtCTCTGACTGAAATGGCAG
GCTAGATCTGtgctattttgccttattttgaacTAGGTTTGAGGGTTACT
TAAGCTAAACACCAAAAACTTTGACTTTCACAAGAAGTTAGAGTGGGCGA
AACATTTCATTTTGAGCAGTAGaccctttttcaatttttattcccTTGAt
gtaaatgaatttattttttatttttatttttattttttttttaattaaag
aaaTGTGTCAACTTTGGAGGTATTGGTATCTTACACGTAAGAACTAAGAA
CTGTTGGGTTGTTTTTTCCAGACATTTTCCATGACACAGCATAGAGCTTG
TTTGATTTTTGCAgcattttttcatcatttttaaatttttaaaaactttt
catatATAGTGGTATGTGGTGGTATACATAGTCATAtatagaaaacagaa
aaatgaagcgactgcttGTTATTAGTCATATAGTgtgtatattatattat
attatttttaagCAAACAAGATTTTTTTACTAGGCATATTCATCAGGTAT
TCATTTTTGATgaattaaaaacatttcaaaaaagagGTTTTATACTGAGA
GATTCATCCCAAATagggcgagaccaatttaatttgttgttctacgggca
aaTTGCTAGCAAAATATGGGGCGGTccttaaaataagaataaatttttca
tttatcaggtgTAGTGTGTAAGTAGTGTaaagtggaaattcaatattatt
ttttttttggttttagtATAAATAGGATCTGTTGGgcctgtagaacaaca
aattaaattggtcttgcCTAGTTTAAACTTTTTGTGGATAGATCAAGTTT
TTAAAAACCAATATTATGCCTTGCATTTatttatgaatatttttattttc
ttccagcgtaataatataaaataagaaaGTAAAACTATGGACTGTGAATC
ACTTATTAGTGAACTACTCCAGATCCTGCCGAAGGGAAAAGGcaagaaag
aaaaacacaaagtgcgaagaaaaaaaggaagactAGCCGCTTCATTGgag
gtaaatattttttttacatttttttacatttttttaaacaacattacctt
aagggaataaattaatgtGAGAATTAATTAATGCGGAATTAATTAATGCA
AATTTGACCTTtcttcgcaaaattaaatttctgcCATTCGCATTAATAAA
TTCcgcatttttttctaaattcctCAATTCCGCAAAAAATCACTTAAAAT
GGGCCTattcgcattaatttattccgcaaaacataaaatttttttgggtt
GCACGCATTAATTAATTCTCACAATAATTTATTCCCTTACTTATAAGCAA
AATTATTTAATGCATATAAATGAAACTTCAGTTGACCTATGGTTCGGCCA
TTCCTTTCTCATCTTCAGGgatattttccccattttctcaTGGACGTAta
acttttttctaattttagaaAGAAATACCAGAATTGTTGAAGAAAGAGTC
AATTGGTTCAATACGCGCTAAACTTTGGAGTCAGATTTATCGAAAGTTTC
GAAAGGGTGATCCTTGTAATGGAGAGACTAGTCACGATGAAGGAGATAGT
GATGTTGAGCGACCTTTGGTATGTACTGAAAACAATTATGCATCTCAAAC
TCATTATCTCAATTATTAGGGGGTTGGGTATACAGGGTGGGTTTCAAAAT
TGTTcgtcgaaaaaatttttttttctattcgctctttgaaaaaagatctC
ACAGGCTAATTAGGATACTTAAGATACCATTCCTGCCAAAAATATATCTT
GGGgctcataaattttgaaaatcgactaaccACCCAATTAAACACCCACT
GATAATAGCTTTTTTGCCCTTTTTGGCCAGCAGCCAAATTTAGTCGAAAT
CAATACATTTAAGGCATCAACTTGTAATATTGGGCCATTTCACTTTGTAT
CCATACAGGTGGGGGTAGACAAATAGTTCTAGAGGGTAATCTCCAGGGTT
TGTATATTTTCATATACGTCCCTGTGTGGTTTTTAAAAGGAACAGCCAAT
TTTGATCAATGTTAATGTACTTTTCTTATCTAATCAGGTTAACGAAGATA
CTCCTGAATCGGACGAAGAAACTACCGAATGTGATAGCTTTGAGATGGAG
ATTTGCAACAGAATGGCTGATATTATTCGTTTGGAGCAACGACATGCTAA
GTTTCATAAACATTTGAGTAGACCATCAAAAATTGGAGCAGCTGCAATAT
GTAGTGGTATTACTGGATTAGTAAACGAACAACTTTTTAGAGACATACAA
CTTCACATTATATCACCAAATAATCTGCGTGGCATATTCTTTCGTGAAAA
TAGGGACATTTTCACCATCAAAGCTGGAATGTTTGGTATTAAGCCAATCA
TTGTGAAAGGAATTTCTGACTCTTCAATTATTGAGCAGAAAAATCATTCT
ATAGTGTTGGCTCACGAATTTAGAATTCTCCAATTTCTTGGTCCCCATCG
TCACCTTATCGATTATTATGGCTTAGTCGAACTCAATGGGATTCCTCAGA
TAGTCTTGGATGATGATTTTAAATTTGCTGGTTTTGAGAGGTTCTACCAA
GAAAACCGTCGCTTTGATATCTACACCATTCAGGCATTGTTTAGAGACAT
AACATCTGTTGTTGAATTCCTCCATGTGAAGGGTGTTATTCACATGAATA
TAAcagaagattcttttgtgttcagTCTCGATGTTTCTGGTCCAGAGTGG
AGGTATTTCCCCATCCTTTGTGATTTCTCCTGTTGTTGTCTGGTCTCTGA
TGTGAAAGTACTGACGCCACAATTGCAGAGCAGATTTCGATCAACAAAAC
ATCTTCCCGTAGAAGTGATGCGTGGAGAAAAATTGCCATCTTTCAATTGT
GACATTTATGCTGTAGCTGTTTTGATGTCACATTTTTCAAACCGTTTGAA
CACTCCTCAAGAAcaacatatttttgatgaaGTTACTATCAAGCTTTTAA
GAAATACTACAGATATTTTTATTGATTCATTGTatgatttcattaaaaac
taaagtatttgaaactttttcttcTTTGCTTGTTTGACTTTCCCTAATTC
CCATATAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063420TCONS_00063420Clytia hemisphaericatranscript
TCONS_00063421TCONS_00063421Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063421-proteinTCONS_00063421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_389supercontigscaffold_389:64235..67692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11	0.11	0.16	0.13	0.46	0.17	1.32	1.01	0.69	0.88	0.54	0.33	0.41	0.5	0.17	0.3	0.23	0.18	0.24	0.03	0.15	0.22	0.39	0.16	0.37	0.07	0.26	0.11	0.3	0.22