XLOC_040049 (gene) - C. hemisphaerica

Overview
NameXLOC_040049
Unique NameXLOC_040049
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_404:463702..467020+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040049 ID=XLOC_040049|Name=XLOC_040049|organism=Clytia hemisphaerica|type=gene|length=3319bp|location=Sequence derived from alignment at scaffold_404:463702..467020+ (Clytia hemisphaerica)
CTGgtttttttataacatttaAAAATGCTGCGCTTGGCTTTTATATTTAG
TAGCTGTTGGATTGTAGCTTGCTGTGAGTCTCTAAACTTACTGTAGCTAG
GTAAAACTTTATAACAAAAtcggcctaaaaagataatcaaataaacaaat
cctcactgcaaaattttatgctaattttccccactgaattttctgattgg
aaaacaatggaaaatcaATCTCCATCGAGTTTCAATCAGTTATTTTTACC
CCAAACAGGTGAAAAATTCTACCGGgcctgtgagaagagggtgttcAAAT
AACTCAAAATAACCTGTATTCAGCGGGATCGATCCTAAAAACTTGTGAAA
ATGTGGTCTTTCCCTTCCTTTCAAAGATGCATGCAGTGATACAGACGAAG
ATTGTGGACGATTCAAAGATTTGTGCGGCGTGAACAGTTACGTCGACAAA
CACTGTGTCAAATCATGCGAGAGGTGTGGTGGAGAGGGTGGAgccaccac
aacaacaacaacagcttCTCCTGGCAACGGAAATAGTGCCACTACAAGCA
CAGCAACAACACATCCCATGGCAACAAAAGGTCAGTTCGTCATTCAGAAG
CTCAGATATGGCGAGACAGAAAACTATCACCTGTATTTTtgcaaaagcct
taaaatctcaaTAATAAAATGATACTTTTATAAACTTATCAGTCTGCTTT
TCGATATTATTCTCCCTCGATTTAGTTCCATGTGTCGACAATGATCCAGA
TTGTCCAGGATTGGTAGACTTGTGTGGAATAAACAGCTATGTAGACAAAT
ACTGTTTGAAGACGTGTCCTGAAGCGTGTAAGAAGTTGAACAATGGAGAT
GGCGATGGTGGTGAAAGTCAAGGAAATAAAAATGCGAAATGTGGAGTTTC
AAAGGTAATGAGAGGAGGTTAGAAAGTCGCTTTTAATTCAAATCAAGCCT
CAAAAATACGAGAAAAATATCACTCTCCCATCTAAAGGGATGTGGCGAAT
GTGACAATCTAGCCTAGTCAGATTAgacaaaacaattaaaatacGTGCTA
TGTGCGGAGTAATCAGAGTCTGCTCGGAAATCACGAGATGATACATGAAT
ATTTCATTATTCCATTGATCGATGATGTTTTTTTCCAGGTATCGCAACCT
CGAGTAGTAAACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCAT
TTCCTTACAAACAGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGA
CACCGACATGGGTAAGAATTTCTTAGtgcttttattcaatttatCTCCAA
GCCCGTCAGATCTGTAATCATACCGATCCAGACATTCGACATTCTGGCAC
AAGATTACATTTTGGCAAGAAACAAAGTGAAAGATTTCTTTAAGAAGACA
TTGTCCAGGTTCCGTTGGAacgttgaaaaatatttacagatttctttttt
gataactGATCTTGATCTATATTAAGGCAAATTATGTGTGAAAAAAGATG
GCACCATTTTCCCTTTGGGTATGAATATGTTTGAAGATTTCGTGTCCAGG
AAAGTTTTTGACATTAAACACTCTACAATTCGAAACTTAGGAAAGAGCCT
CAAATTTATTTCACATGACTTTCTGATTTTTATATATTAAAGATTTTGAC
AGCCAGTCATTGTGTgaagaaatacaaagaaatacCTGGTTTCTTTATGA
TCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTCTCAACAAAGA
ATCGAAGGTATCTGAAAGCAGATAGTTTAAGGATTGTGTTCACAGCTCTG
TAAAGAGCAGTTTCTAAGCAGAAATTTTTACACACTTTGACAACATCACC
ACGTTTAATCTAAACTTGTGAGAACAAAATAATCTGATGAATCAGCATAT
CTGATAAATGCCTTTCCTATGCTAATACAGTCAACATTTCTCTAATTcgt
ctattattcgaatctttccatGATAGAGtttaaacaaaaatatattAGTA
GTTGGCAACCTCCATAATTCAAATGTTCCTATAATTACCGAATCAGAGAA
TCGAGTAAAAGTTATCAATACATTAGCCCACTACAATTCATCCGAAAATG
TCCCAAAACGCTTTCTTTTTAGCCAAGAGAATCATTGTTCACCCAGAATA
TGGGCGTTACGATGAATTCAGTGCTGATATCGCTTTAATACAACTGGAAA
CTCCTCTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAA
GGCGTTTACCCAAAAGTTGGATAGAATTGTTACATTGCAGGTAAGATTAT
ATTCATCGAACCACCCGTGATTCAGCGTTTAAAACAATTGGAACCGGTGA
TTAAAGCTGGGAAGAATGAGATTCGAGCgtttcatttttcttgaatCATC
ATCGGCGGTGAACTAACATGTCGTTCGTTGAAATATTCATACTTATTCAA
ACCAAAACTCTGTCGATTTCTATGTGTAAACTTCTACGGCTTCTACATCT
GATTTCAATCTCTTCTCTCATTTTGTTTCGCATATAATAACTTACTGAGC
AATGCTAAAAACTAATCCTTTCAATATCTCTTCCAGGGTGGGGCGCAATC
GACTACCCTGGGGATTCCGTTGACACGTTACAACAGGCACGTCTCCCAGT
GGTCGGTACCCCACACCCAGGTTGCCATAACAATACTGAAGTCGTTTGCG
TTGGTCTTGGATTCGGAAGCCAATCTAACGGTAAACAACATCCAAACGCA
TGTCGTGGTGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATC
ATGGACTGTGGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACT
ACACAGCTTACGCTCCAGCCAACAAATACTTGCCATGGATCAAACAATAT
GTTAATGAattataaaactttaaattaaaTCATCAAAGAAAAGTTTAATA
TTTAGTCCCTCCTTACGTGTCAATTTTTAGTCGAAATTCTCCATAAATTG
AAAACCTCCTCATTGAAATATAGTTTGTTTTGATCAGTCTGTTGCTGAGA
AATGTCCTAGACAATACCCCACATTTAGATATATTCAACTGTTTTTGAGA
TTCTAAAGATGCTTCGTTTGTCTAAATATTTTGGTTATTTAGGTAAAAGA
AGAGGTTGAATTTATGTTTATCACTACTTTCACTATCAGTTCTTTAAAGC
TTGCCACCAGTTCCCTTTGGGGGTAAAATGTGGGGGGCgcacggggtttg
cgatttccgaaataccgaataattttgccaaaatttccgaaattccgtaa
aaaaatacttgcaattccg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063885TCONS_00063885Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063885-proteinTCONS_00063885-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:463702..467020 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.08	0.06	0.09	0.25	0.17	0.22	0.23	0.35	0.24	0.28	0.1	0.17	11.89	15.82	0.17	0.47	0.14	0.23	12.35	16.63	1.33	1.26	0.88	1.04	60.15	63.27	0.5	0.41	0.24	0.12