XLOC_040067 (gene) - C. hemisphaerica

Overview
NameXLOC_040067
Unique NameXLOC_040067
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_404:149507..157805-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040067 ID=XLOC_040067|Name=XLOC_040067|organism=Clytia hemisphaerica|type=gene|length=8299bp|location=Sequence derived from alignment at scaffold_404:149507..157805- (Clytia hemisphaerica)
CATATATCAAATAATTGTTTTTAGCGTGGTGGTAGCTAGCGACACTGTTG
CTGTGAAATCTTTCTGAGATTTTTTTATTGATTGATAAATAAAATCGGCA
AAAAGGCAGAGCCAGATCGACAAAGAAGGAAGAGCAGCACATTGCATTTA
TAAGACCTCAGCAATCCAAACAGCAATTATTTATGTTGGTAAGTAAGTAA
TTCTGTTTCTCGTTTTGATTAAAAGCTTGCGTGTGCAAACCAATCAAACC
AGATTTAAGAAACAAATTGAACATCGTTTATGCTCAACATGTGCCAAGTC
AGTATTCTATATTTTTTGTGCAATATAAATAGATACATACATAACATCAT
ATTGCAGATTTTTTAATTAGGAATTATGTATAATTTAACCAAGGATATGA
TTTCAATATTCATAGTATTGATCGTGGCACCATGCCTGGTATATGCAGGT
AAGCGTAAATTTCACTTAGTAGAATACAAAATACCTTCCGTCTCCCAAAC
CAAAATTCCATTGGCCACTCTCCACGCTTTTTTTAAATAAGTATACACTT
TACAAGAATGTCCATGATGAAAATGACCAAAAAATCATGAATATGCTAAG
AATATCACCTTCATAGAATTACCCAAGCTAAGAATGGCATTTTTAGACTA
TTTCAAATTATAAATCGTCAATTAGAATTCTAACCCAAGAATGCTGTAAG
AATATTTTAGAATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAA
TGGATTTACACCATTCTTATAAAAATAAGCGTGTACTCTAGAGAGTTTTG
GAGCGCGATCTGGGACATCTAAAATCACCGCTTAAAGGACCTCATTTTAA
ACGGTGATTTTAGATGTCTCAGATCGCTCCAAAACCTCTCTACTCTACTC
TCCAACGGAAGAATAAAACTAAAAGCTTTAGAAAATTAAAAAAAAAAGAA
TTTCAGAAAGTAAGTCGTTCATTGGACACTTCACTCATTCGTTCATGAAA
ATCTGAATGAAATAAAAATTCTAAGAATACACCTCTAAAAATTATTTCTG
AAATAAATTGTTGAGTGACAAATGTAACTTTGAAAGTATGATACAAGTTT
CCTATGTCTGACGTAATTTATGAAAAAGGCTGCATTGCGTATTCCAATCC
GAAAAAAGGATGCACGGAAGTCGCTCGAACTGAGCCAATTTCTCCACTTT
TTGATTTTACTGATGGAGTGCTATCAGAATCATAAAAAAGCGAAAAAAGG
GGCTGGGTTCAAGTTTGGGTAAGAAAGAGAGAAGGGTCACTTTTGCTCAA
ACTCTAGTAGATTCTAGTAGCGCCCACGGCTAACAAACGTCCATTGTAAA
ATCAAAGAGCGCCAGTGTGCAAGTATCAATGGGTACGAAATTGACTTTTG
TTGCCTTTGTCACTTGGAACTACAGATTTTTGCTTGGATTTTGGCCTTTT
TAAGTTCTACCTAGATCCCTAAACTACATATCAACATAACCCTCGGAGGA
CTAGAAGAAAGAAATGTAACTAATAATTTGATAGCCTTTTTAAGAGGCCC
TTAATTCCATTGTGATATATAAAAATCAAGAATGAAACCATTTATGATGA
AAAGGACACTTGTTTGTAAGGAGATGACGCATTTGTAAACTGTAATTTGA
GAAACCTTTCATCTTTATTGTGTTATCGTAGTAAAGGGAGGCATTATATC
TTTTATCTTTCTATGATTCATCCAATACTCATAGATGCGCTAAAACCAAA
ATAAATCCGTAGGCTATACTGAGGCAAAATCTGTTAATAGTANGCTTGAT
GCTCAGCAATTAAGAGAAGGATCAAGGGTAAGTGGAGCAATCCAGGGAGA
AAGAGTGGCACCCTCCCCTACCTTCGGGTGGAACTTAAGATTCCGTCAAG
ATCTTGAATCACTGTAAAGGACAAGAATCTTATTCAAAACTTATAAAAAA
GTCTTATCAGATCGTTAAAGATCTTGAAAGATCTTGGCACGTTCCTAGTA
AGAAACTGAAAAAGAATAAGCAAAGTTTCTTGATAAGATCTTTTCAAGAA
CTTTTCAAGAATTTTTACCAGGGAAGACCTCCAGTTGACCATCGAGTAAA
CAAGCGAATTTTATAACAGTCAGCTTAGGCAAAGTCTTTGGCTTAGGCTA
NCAAAAAGATCTTTAAAGATCTTGTAAATAAATTGTTAAGAATTGTCAAG
ATTCTTTCCGCATATTTATAGTAAGAAAATTTATTATTTCTTATTAAGTT
CTTAAACAGAATCTTACGAAATCTTGAGCTATAAATTATTTTAAGATTCT
TTGCGTAACTTATAAAGNATCCAAAAGGGTAGGCTAAATAAAGTCCGGTA
AAAGAACCAAATTTGACTGATATAAAAATTGTCCACATAAGTTTTATGTA
GTTCTTTAATATTTTTTTTGCCAAATCAAATTGATCTAAACTTATTGGAC
ATTACTTCATACACATCGAAGTATTTCCAATGTCGAGCCCGTGTATTATT
TCCGTTCACATCAAATATATTACATCTTAACCACGCATAGTTAGGCTGTA
GCTTAGTGGCAAGTAGTCTAGCAAAAGAAACTAAACATTCAAAAGACACA
ATATGTTGTCAATGTTAAGAATTTTGATCAAGAACACATTCTTCAGAAAT
TTGCGGTATAATCTCTCATAACTCAACAACCATATCGGCTTTCTCGATGA
AGTGTTTATAAGGAATTTAAAAAATGTTACATCAATCATTATAATATGTT
ATTGATTCCAAAAGAGCTGCTGTTCGATGAGTATGATTCCCATGAACTAA
AAACAACAACAAATGAAACATAACTCTAAAAAGGCTAACGAATCCGTGCC
CCTTTTTAAGGCCACCCAGAGAAGCACCCCTAATCACGCCATCACGCCAA
TTTGATCCTCTCTTCACGATCATGAAATTCACTAAAAACTTTTCGTTACT
TTTCGTTACTCAAAAATAGCGAAAAACCCACATCACTCCTTGAATTTCAC
GCATAAGATTTTTAGAGTCAACACGCAAAACTGTTTGAGCGGGGGAGCTT
ATTTAGCCCGGGGCTATTTGGTTGATTCCGTATAAAATATTACGTCATGA
ATATCATGAATAAAAAGGAGATATCTCTTTTTTTTCACAGGTTATATGAG
CAGAATCGGTGTCTGTCCCCACCCAACCACCAATTTTGTTTTAAAAGATA
CTCGGTTAAATTTCTATGGTCTATCGTACATCTTACCCGGAGATGAGAGT
CCACCTTGTACCATGTCAGAATGTCAATTAGATACTGATTGCCATGGCGA
CCATAAATGTTGTTCTAATCATTGTGGTGCTTATGTTTGCACGGAGTCAA
GTAAGTATAACATGAAAGCATTTATAATGAACATTTTTAAATCTCTAAAA
TACATTGATATTATTTTGTTTAATTGCTAGAAGTAAAAAGGAACTTTTAC
TCAATATCTAAACTTTGGAGCAGTTCTCTAAAACACTTTTGAAAGTTTTG
CTATATGAAGATGAAAGGAATCTGCAGACCAAATATTTCTAACCATATGA
TAATCCTGAACATCAAAAATTATTCTTGTACATTTCATTGATGTGAATAT
TTTTGATGAAGAACTGGTCAGCCTTCCTTGTTGAATAATTGATCGCTTTA
TCCGTTTTCCTAGATCAGGATCATACCAACTCGGTTTTTAAGAGCTTCCT
CAAAGAATTCAATATCAAAACAATTTGAATTTCTGTGATTTTGACATATA
CCACTATTTTTTGACTCTATCCTTGTCTTTTGTGTTTTCTCCAAAGATAA
ATGTTCCTTGTGTTATGACCATAAGTAAACCAAAAATGTTGAAGAAATAT
TCTTTGATTCTATTTGATTTCTTTGTTTTTAGTGAGAGAGCCACGTCCAT
GCCAGGTAAGAAAACTATTTTTTGCTGAACTACAAGTCCTATATTACTCA
ATTACTCAAATTACTCGAAATGGGCTTGAGGGGGGGGGGGCGTACGGGGT
ATGCGATTTCCTAAATACCAAATAATTTTACTAAAATTTCCGAGATTCCG
TAAAAAATACTTTCAATTCTGATACCGATTTTTTTGGATTTTTCCTCGTT
TTGACTAATTTTTCATCAAATTTGATTTTTCATATATGAATTCCGAAAAA
GGGGGATATGAAAAGACAAACATTTTTCCAGTTTTCTTGTGCTTCTTTAT
CTATATAGTAATGATATAGCCATATACGTCTCGGAAGCCATTTTTGCAGC
GTTTTGATTTTCATAGCGATTTTAGATTTCCGTACATCAATTTCCGTGGG
ATATGTTTCAGATTTGCATCAAAATTTTTAGCCTGAAATACGAGATTTTT
GTAATCTTTGTCCCCTGATCACTACTCAAGACTAATATAAAATCTAAACT
AGCCATAATTTTCATTAAAGTGCCACCGCAGAAGAACGATCANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACACGCGCAAAATTATGAG
ATGTTTGCCCAACTTCCTTATGCGCGAAGCTATGAATGCCATCCTCGGAA
GCTTTAGGCTTCCTGCGGTGGCAAAAAAGTGTATAGAAAACTTACGCATT
CTTCCATATCGAATTTTGAGTAATCCTTTATTTTCTAAATTTACCATTTT
ATCAAAATTTTCAAGCGCCTGTTCATTCTTCAGATTAAGGAAGAGTATTT
TCAAAAGTAGACTAAGACTTCATTTCCACTTTTCACATTAAACATTTCAA
AGCTATTCAAAGTCACACTCAAAATGTCTACACACGATGTCTACACACGA
TGGCTAGAAAATCCAAAACCTCTCTAAAGCAAATTATTTGTGATGAAAGT
TAGCACTGCAAGTTCTTATTTTTGAACGTATACTTTCGTTTTCTGTTTTC
GATCAAGCTAATGAATTAGTGACAAGAAGCCGGAGCGGCGTGAAGGTCCA
GCTGACGTGGCAATAACCGAATGTCGTTCGTACCGGGTTCCTTAAGTGAC
GCAAATTTCCTTCACCTCCTCCATCCTTTGTATTGCTAGGTTTTGAAAGT
TTTTATGCATTTCCCGAAATATCGAAACTTTTGCCGCTGATGAGATTCGA
ACCCACAAAGCACCTATAATTAGAACGCCAGCGCCTTAACCACTCGGCCA
TCGAGTCACAACTGCATTAAGGAGTTCAAAGTTCCTTATAAACATGGTAT
TTACTCCAAACTCTACCCGGGGGCTAAACCCTAACCAGGGGCTAACTCCT
ATCCCCAACCCTAGCCCTAACCCTACCTGAAACAACCCTTTAATCTAACC
GGGAAATATGACCCTACTACCAATTCAATCCAAAACATAGGTCAAACATC
GCGCGGGTAGGCGGGGCAAAAATTCTAGATCGGCGGTTGGTTTAGACGAT
CCTATCGTCTACACAAGATCACTAAAAAAGGGAATAGTTTAGGAGACCGT
AAACCGCCCTAACGCCCGAATTTTTTCCCGCGTTTACTGTACCGACCTTT
ATTTTAAACGGACGATAGCATCGTCTACGGTTGGTTTAGCCTGGACTTGT
TAATTTATTGCGCGCACAGGCCCCGACAAAGACAAAATCTTTTTGATCAG
TTGCTTTTTAAAGGTCCATTCTGCTGCGCGCTGAACCAACAAGTCATCTG
TGACGACGGCCTGGGACCGCTAGTAATGTTATAATAAGGGGTGTGTAAGT
GAAATCTGGCTGCTCTTACTAATATCCACAGGGAAATAAGAAAACGAATC
ATTCAAAGCTAGCTAAATTGTAAATTGTAGCTAAATTTAGAAAAGAAAAA
ATTTAAAATTCATATAGCCTTTTTGATTTGATAACTAATTTTCATCGAGA
ACCCTCACTCTTTCTTATTTTAGTATTTCACATGCCCTATAACAAAAACT
TGTAAGATCCAAAAAGTGCAATGCATCGAACCCTCATGCCCTGAGATGTT
GACAATCGCAAGACCTATGTGTGTAAATGGTGGTCCATACTGGGGTAAGT
AAATATAAAGAGTAACAGTTGGCTCTATTCGATTTATCTCTCGATTTATT
TTTTTAGTTCTTGGATATATCATCTCTTAAAAAATTTTGTAACCCTATAA
TATCCTCTCGTGTAAAATTGCCTAACCTACCACCCCTCCCCGACGGGAAA
TCATTCATTCTTATAAACTACCCCTCGGATATCTGAAGAACTATAGTCTA
TGGATCGCAGAACTCTATAGATGCACCTCCCATCTAGGAAATTATAAGAA
ATTCTTTTCACTATATGTTTTTTTTAAGAAATTCCAAAATTTTTAAGCCT
TCGGACGTTCTTAACATGTTCTTATTTTCGCCATTTTTTGAGCATTTTTT
GCCATTTTCAAAAGAAATCACGTACTTTAGACGCTTTAGGGTCCGCAAAG
CCTTAAATGTTCTTACCTTGTTCTTAACATTTTTGCCATCTTATGTTCTT
TTATAGTTTGCCATCTTATAAAAAACGTGTAGAGGATGTGCAGAAGCCTA
ACGAATAAAGAGCATTTTGACACCTGAATAAGGGGGAGGAGGGCACTGAC
TTTTTGCAAAATCCCATTGTGGCTACCCTGTAAGCATACCACTAATAATC
AACCACTTTAAATAAATAATTTAAATCCTTTTTTATTTGCTTTTCATAGA
AATGACAAAGAGGAAACGATGTAAGTGGTACCTATCATTCGATTCCATAG
AAAATTGTATTTTATGAAAGAGTTCTTTAGTTGTAGGGGAAACAAATAAG
GGTATAACATTTGTTTTGCCTAAAGGGAGCTCGGTCGCTTGGAATTCGGG
ATAATTTTAGAAAAACTAAATTTCAGGTAAATATTCTGGTTCGAAAACAA
TGAAATTCAAATCCCCAGCCATAAATAACAAGGGAATATCAATCCCCATC
GAGTTTTGGTCCGTTATTTTTACCCACACTGGCTGAAGAAATCCCACTGG
GTCTGTGAGAAGGGGTGTATTCAATCACGCCAGAATTACTATTTTTGATG
ATATTAATATGAATCTCATAATATATTTTCTTATTAAGCTCGTATATTGC
GTCCAGATATATTCACACAAGAGGTGCCATTCATATCAACTAACAACGCA
GGTAGCAGTAGAGATATCAATGAAGAACGTGAAAACTCTTGGTTGTTAGC
TTTAACTCCTTTTTGGAACGGTGAGAAGGATTGGAAAAGTTCAACTGGGA
GCACCTCATCGTGGTTGGATTACTATGGGCGCAGAAAGAGAGCTACTAAA
TCTTAAGGAACTCGGGAACAATGTTTCGCGACTGGAAAAATGATGAAATT
TTGGCTTTGAAATGGACATTTTTTTGTGGCCCGACTAAACCTCGTATCGA
TGTGTTTGTTGTTGAATGTTTGTATTTTTTTAGCTCGTGCCAAAATCCAG
ATAAAAAGCCTCTCACCCTTGTTCGCAGGGCTTAAACTTGGCGATTGGCT
CACTTTAAGAAATTTCTAGTATTGAATTTATTTTTTTTCTTTATAGATTA
AGTATCCTGTGTAGTCATTATTTAATGCGTTTATTTGTTTCAAATGCTGT
GTAAATTCGTATTTTAAAAACATATTCGAAATTGACGAATCTACCATTCT
ACTCTCTAAGACCTCAAAAAAATAGTGTACGATTTACCCCTTTATTTCCG
TTATTTAAATATCTTAAGTGGGCGTGACCGTCGAGGCGTCAAAATTTGAC
ATTGAGAATTTCATACCCTTGGGGAAGGGGGTACTGATCTTGGTAGCCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00063927TCONS_00063927Clytia hemisphaericatranscript
TCONS_00063926TCONS_00063926Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00063926-proteinTCONS_00063926-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:149507..157805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.04	0	1.48	1.37	15.52	18.85	5.07	6.5	16.85	14.46	14.46	10.31	11.33	24.41	18.16	16.84	0	0.04	8.76	9.36	7.51	5.54	7.99	8.35	1.65	0.65	3.24	2.56