XLOC_041410 (gene) - C. hemisphaerica

Overview
NameXLOC_041410
Unique NameXLOC_041410
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_451:510556..519842+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041410 ID=XLOC_041410|Name=XLOC_041410|organism=Clytia hemisphaerica|type=gene|length=9287bp|location=Sequence derived from alignment at scaffold_451:510556..519842+ (Clytia hemisphaerica)
GCTCTACGGAAGATTTAACACTTGAAGATCGTCTACCTATCCCTGTGGCT
CGTCTACACAAAAAGAATCCACTCGATTTAAAGTAAGTTCCTTTATTCGC
CATCTTTATTGAATCTTATCCGGAGGGGGgtgtactagggttgcgagctg
acgggtatgtgccgcccgactttcaacCCTCTGACCTTTAGcaggaattt
tacgacccttattgggactaatttgacttTGAAGGagcaaaaagtagaaa
ttttcctatttttctggcccttagtgggactgaaatttaattttctggtC
CCTTACAGGAACTTTaaggtctcaaaaaagacaCCATTAAGGGCGACACA
TACCCTTCATTACACGTACCCTTCATTCgtctaagtaccccccccccggg
aatcgTATAAACCGATCCCATGATTGAAATCAGTGAAATCGTAATTCAGA
TTGTgtttgtattcatgatatgcgccattgcaatgtcttccgtggactca
acagctgattggttgaaagtgacgtattgactgattttacgtcacctaca
accaatcagctgttgggtccatgatgtaatgtcagaagacatcgcagtgg
tgcatatcatgaattcctgGAAAAGACTTAGAAGAAGGAGGACCTATACT
TGTATGTAAACAGTTCTTTCCGAAATCTCGAAATCCAACAAGGttatgga
aaatttggcaaagtttgCCGTGTGCTGTTCATTTTCTGTATAAAAAACAC
TGCTgtagttctcaacttcagttgagctacaatctgacaatgtctgtctg
tctgtgtgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggtg
tttttttcattttttgaaaattttgatttttggggcctggggacgagttt
ttcgccaaaacgaggctaaaactttgtggcagcctggagactttaaaaat
tgttgtatttagctgaaatttggcacacttgttccttgggtgaatatctg
gaagacttttttttcatttttcaaaaatcttgatttttggggcctgggga
cgagttttccgccaaaacgaggctaaaactttagagcAGAGCCTACAGGC
CTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNtgttccttgggtgaatatctgggggtct
acaattgggcttatgaataatttgaagccactgaagttgagcccagtgcg
ttgcgcacgttcgactattacaaattcaacttcaaaaaaaatgcTCATTT
TAACTGATTTTTCGTCCCCAATGGTAGGAAGGAGATCGAAGCTGCaaaga
aagatattttctcatcCGCCCTTTCCAACAACACGACGCCCGGTGGCGGT
GGCGGTGGCGGAAACTCTCTTTATTTCACGCCCAAAGAAGAAGAAGGGAA
CGATATCACTGTACGCCCTGTTTCTTTCAACCCGGACCAACAAGATCGAG
TTAATCCGAGTAACAACTTTGTGAGTGAAGTTAATTTTTCGAAGATCTAT
TTTTATCTGAAACTTTTAGtggtattttttttcgaaatttaagtTAGCTT
CTAAACTTTCAGGTAAAAtgtttctgaaaatttcaaccgAGTCCATCCTA
ATCTATCCCAGTCTCATTTTTGGGAGACGGGAGATATCTTTTCGGTCCAA
ATCTGTTGTAATGCCATATTCTGAGCTATGCCTTTTTTAATAGCATGCTG
CACTTTTTCTACACCTTCCTATAGAAAATCAATCGAGTTAATCCGAGTAG
ATTTACACTTGTGTAACTCTTTCTAATCAACTTTTTCCTTTCATTTCAGG
GGAATGGGGATAGCGAAGAACTTTTTGAACATTCAACGGAACTTGAGGAA
GAAGAGGAAGAGGTCGAAGATAACGATGGTTACGTCATTGATTTCCTTCC
CAAGCCTAAAGGTCTGTTTACACTTTTCTTCGAAACGCTTTTCAAGTCAT
CGATTTCCTTCCAAAACCTAAAGATCTGTTTACACTTTCCTTCGAAACAC
TTCCCGAGTCTTCGATTTCCTTCCAAAACCTAAAGGTCTGTTATTTTCAC
TTTTcgagtttgtttacattttaattGACAGACTTAAAGTTCTGTTTTCC
CTTTCTTCACCAAGCTTAAAGGTCTGTTTACACTTTCCTTCTCACAATGC
AAAGgtcttttttcactttcgtGCTGAAAGATTTTTCCCTGAGAAGTCAT
TTTTTTCGACTATATCCACatttattggaactaattttcgcgggttctaa
ttttagcgtttttcgcggttttttgtcaaaatcgcgaaaattaattcccg
cgaaatacaattttttccaattttatcgaaaaatttgaaaaacccctagg
aaaatgaaaagaattgtCCATAAAAAGGCataaccgcgaaaattaaaacc
cgcgaaaattccagtatggaaaaaaccgcgaaaattaaaacccgcgaaat
gcattttttcggatattttttttcgaccgcgaaaattagttcccgcgaaa
attagttccaataaggtatgaAAACGTCAAAAAGCTTCGATCAAAGCAAT
CCCGTTTTTTCTTATCCCGGTGGTATATGAAAAAGTTTCCCCAATaatca
tattttcatattttgattcaAGAAAACCCGAACGGCATATTAAGAAACAT
CTGCCTTATTTGTTCAATACCTATTacacccactgacctttatatatata
tccctggaccaatctatatccgccatctttgattggaagAAGCCATCGCA
ATATTAagaattaacgtctaacggcgccacagcatcaaaaatatttgagg
gaaagtagacctagtgctctcgatgcatttacaccgctatttagtagtgc
cgccattagggtaccacttttcaaaaaactccgatcaaagattttgcttg
actGGGAATGAGAAACTTGGACcaggttatataaaggtcagtgattacAC
CCCGATAAATGAGAATTATAATCCCTATAATCCGATTTACCGTTGTCATT
GCCAGGTAAACCTGAACGTCAAAACAAACATCGGTCAAGTCAATCCGATT
CGGATTACGATTACAACCCGATTAGTGAGGacgaaggagaagaagaagat
gaagacaATTATTATGAAGACGCCGATTTCGGTTTGATAActctcttttg
aattttttagttttgatatTGTAGTGgcctcttccagaaaaaaattgatt
attgGGAATGGAGGAGATAATAATTTCTTGGAGATTTGCCAACCGAACAT
TTTGGTTTTTGACCCCcaggacagcaggtctaaccccccccccaacaAAT
ATTATGAAGACGCCGATTTCGGTTTGATATTTCTTTTGGATGTTTCCTTT
TTTTGTCTCAAAACTGTAATGTGATATCTTTCTCAAGGCTTTTTCAGATT
GGTGTAGAAGTTGGgtttactttttttaataattgtGACTGTTCCTGTTT
TTTAGATCGTTTTCTCACAATATTGATGTTTATTATTCCAAAACGAAATC
GGATTTTTCAACTGGttataaatttgaattttttcggCATACCCGTTCCT
CGcgtattttgtctttttgatgCTTAAATAGATAGAATAgaatcgatatt
ttacgtggatagcccagtaatttaggacttttaggcagtcattgttttca
cggggtccacggccagctggcttggctatctatgaactgaacagaaTATT
GGAAGGAGCAGGGATTCGAACCGCGGAGCCCTGGTTTAAGACgatgacgc
ctttgaccacttggccatcgcttaCAATACAATAGTTTTCTGAAGTCCAT
AAGTGACGTAAATAAGACtagggatacacggggacgagctTCTTTTCATA
TCTTTACTGATatataatttctttcttttacttCAGTGTATCCACGAGTT
GACGTTGATAGCGAATTATACGGGGACGATTTCTCTTGGAACCCAAATAA
CCGAAAACCACCCAAAAGGAAACGCAGTATGTCTGATAACGAACTCATTG
GTACCCTTATGGACTGTCGGGGACACATAtgtcttatataaaacactaga
tagagctactctgtcactttttgaatcaaaataatccgccatctttgata
agGAGAAAGtagttcggtgccggcaatttgatcgATCAAGCCTATCTGTC
GCCTCGTCGCTTGGCGCCATTCAGGTTTCTTTGCCTGGTTGAATTTTCCG
GTACCAAACTGTGACCTACTTTCTGCAAAGATGGCGCATTGTTTTGCTTC
ACCTGTCGTTGCTTGGGAAAtgcagagtagctctatctagtgttttatat
atgaTATCTGTGGTCGGGGACAGTAAAATAAAATGGGAAGGTTGGAAATC
TCTCAAAAATGTTGGTTTAGTCCTGgtcgaaaaaattttgaaaaaataaa
ttgtcaGGGACGCATATGGCATTATTACACGTTATTTTTTTTAAGCATAG
AATTCATTTGACCTGAGGCCGGGCATAACCAATTTCTATTGTTCTGTAAT
AATGGATGTATTGTTATCGAGCCCAAATCTCAGCATACTTATAAACGTTA
TTcttctaaattaaaaaaaaaaccgtaTTTGTACCACTAGTTAGACGAGA
CTTGTGTACCTGCTAGCACACAACATTCCTTCAACATTCATTtagcgtta
tatggacgttgtaaacattaaacgaacgttgaaacaacgttgtgtgcccg
CTGGGTACCAGCTGGGTACCTGCCTCTTAATGAGAAGGTTGCGACTCTCA
GTAatttattaccgagtttatgtatcggatgATATCGAGGGTGGAGGTAA
GTGAAGTCGACGTAAAACAAAGTCGAATATaaatatcgcctttgctcacc
ttaATAGActgtattttggtgtttttgccgTCGTCGAGCAAAATGGGCGG
CGATTTTGGTGAAATGtaaactttgctttataccatCTCCTTCGACGAAT
ACATCgccgttgacaaatcaaaagggCCAATCACAAAGTTACTGTCGGAG
AAAGCCAAGAGTTTTTCTGTCTAGCTAGCCTTAAATTTGAGATTGGCCCA
TTTTGTATGGTGAGGAGGGTCCCATCTACATGAAACagggtcaatctcaa
aatttatgctcagataaacagaaaaattcttagTTTTCTCAGGCAATAAT
TTTGAGTTTGGACCTTTTTATTTGTCAACGGCGACATAAGCTCGCTATTG
AATCATGTAAACATTTTATTTCTTTAGTCCGCAAACCGTGGACTTGATTT
GTCAACGGCGACATAAGCTCGCTATTgaatcatgaaaatattttaatatt
tctttAGCCCGCAAACCGTCAGGAGTGACACCTTCAGCTTCATCAACATC
AGCAACAACGATGACAACGATAAAGAAACTAAAAGAAGATGACTTCGACC
CTTTCTTTGCACCTGATGAAGATGTTAAAGTAAATTTCCAAACTCTTAAA
ATAAGTGTCTCACTTTCTGTccagaaatatttttcaagactttttctTCT
ATTCTGTGACTACTTAAAAAAATTCtagtgaaaaggaaaaaaataaagtt
tttttttgattttgctgcCTTGTATTGTCAATTCTGGTCTCAATTTTAAG
CTCTCTATGTTCATGCATGGAAATCACAgatatcatattcttttacaaac
tagataggctaactgtttaaagattttccgtgaaagtgtgtccagttttg
aAGTCGACTAGTCCGCCATGATGCATTCTATTTTACCTTGGagtttcgaa
cgttcgaatttcaaaacatttgaattgCGCTGTTGtttacaaaatttgaa
aacaagattGCGGACTAGTGAGCTCTAAAACTGGACACGCTTTCTTTTAT
ATGAGAAATCCGATCCAGTCAAATAGTTAGAGAGCAGTGCTGGGACCAGT
GATAGCCATTGTATAGTTTGATAACGAAAATCATATTTTTACATGTTGAA
GTTTACAAATGAATCCAAACTAAAAGCACTTTTTTATTATATTCTTTCTT
CAAAGAAACCGGCTCAAAGAAATAGAAGCACTTCTTCGACCAGCGGTAAG
TGTATGCTATTTTATATCTTAAGCAGATTATATCATTTCATATACCTAGT
TTTTTTACAATTCTTCTGAGTATTATAAAAATGCCGTAAAATAAGTTTCC
TTCAGATTGACCTAAACACTGAAACCCAACCAACAGTCATCCCATCCTTT
GAACGTTCCTCTCCCCACTCCTTTGatcattaccgagtttatgtatcgga
ggatatcgagggcgacggtaagtgaaatcgatacaaaacaaagtcgatag
ttcatgtacggctctatatcgcctttgctcacctaaacagacgacgatat
cttggtgtttttaccgtcatcgagcaaagtggacggtgatttcggTCCTG
tgtcagctttgctttataccgtccccctcgatttatctcgaatacataaa
ctcgctatttacAGGCCCAGCGGAGAGGGTGACTAGGGTTGCAGAATAAT
GGGTATGTGCAGACCGGACTAGACCTTAGAGAGACTCAATTAGTGCGAAA
AGTTACCCGGAGCTCCAGTATATAAGTTCATCATTTTATAACAAACGTCG
AGTCATTCGAGTAACCTTCGCATGGGGTGAGGGAAAAGACCTTAGAACTA
ATATAACTCTCCATCATAACTGGAACACGCACGGAGACTTttctcgagtt
atggagtaaggtttataagacatttttaactgaagggactaGGAAACTTG
ACATtcaagacattcgagttatagatgttcgagttaaagagactgtaCTT
TACCCTCTTGCTCCaaactttttttactttaagGTTTACCCATTGAGCGG
CTCTCTTACTTTTCGTGAGTTTTTTAGTGTAAAGTTTACCAAGAGACTAA
ACACTGTATCACCACATCCTTCTGATAGCTCTAACGCATTTTTCCTCAAT
CTCTTTTAGATGGGAGACAGAAAAGCGTCAAATCAAACCTTGTTGGAGGA
CTGGGGCCGAGTTCAAAAGCACCAATAAAAAAGAAGCCTAAAACCTCAAC
CACGAAGCAACNCTTGTTGGAGGACTAGGGCCGAGTTCAAAAGCACCAAT
AAAAAAGAAGCCTAAAACCTCAACCACGAAGCAACGGTTAGGGAAATTGT
TGAAATTGGACAAAACTGGTACCCGGTATGTAAGATGATGGTAATGAACA
TTTGTGAAACGTTCGTCTTTCTATTTAGATCGTTTTCGTCATGTGCAata
cccactgacctttatatatccctggaccaagctataccCGCcttctttga
tcgaagtttttttgaattggtacccgtaaagaagccattaagaattaacg
tctaacggcgctatattatcaaaagttttcgagggaaagtagatctatat
atcaaagattttgcttgactgggaatgagaaacttggtccagggtatata
aaagTCAGTGGTAATACCCAAACGTAAAGTTGTAATTGAACTTTTCAGCG
AAATACCTAGACTATGCTCTAGTCGTGTCAAGAGTCGAAAGCTTCCATCG
TTTAATTGAGTTTAATTGATTTTTGGACGTTTTCAATACTTTTCACATCA
TAAGCATGCTAACTCATCTTATTACTAAGAATATCAACACTGAGAAATAT
TCTTAGAAATAACATGACGAGTTATTCACAGATTTATTCTTTGGGAGTGA
TGTTATTCCAAATTCGGAATGACGTAACAACGCATAAATCACAAAATATA
ACTCGCGAATTATGGATCTTGATTTGACCTGCCAACTCGTTTTCAATaaa
ccttatcggagtttttgtttttctaaaacagcgatgcattgttggattgt
ttcgggggtataacaatagaattccctccaggaattcctaagagatttct
attgtaatacccccgaagcaatcccacaatgcatggCGTTTTTAGAAAAA
TCNggaattcctaagagatttctattgtaatacccccgaagcaatcccac
aatgcatggcgtttttagaataattaaaaactccgataagatctatgtCT
AGTTTGTccctttgttttctttttaaacttttacctTTCAAGATatcgtt
gttttttataagaacattttaagaaattaATAATTTATTGTATGTAATTA
AGTGACGTAGTTTAATGATGTATGTTATTATATTCAGTAATGTTTTTAAT
ACCCAGTCTCTGTCGATGACCCGCCCTTCCGATTGTTTTGTTGTTAGGGC
GCCACCGCCACCGCCACTGCCCAACGTTCTTCtaagttttaagttttaat
gCTGGTTTCcttcaatgggcttttccagaaaaaaaccgtacaccccctgt
tgaggagctccaaccttttgtgacctacccccttggaattccaggcaatt
ttaggatcatacccctctggaattccgaatttttacaaattttcaatcac
tATCCGCTTTGGAATTTCCCCTtctttttgacggattttcgcctaccctt
atggaattccactgcatttcaaaccttacccccttggaacggaaatggac
ctcctcaacggGGAGGGTCCAATAACTTTCACATTATGTAGTTCTTTGGT
ATGGTTTTTTCTATCACCGCTTCCTCAGAGCATCAAAATATAAAACTGCT
CATTTTTATACGTGGCAACTTGAAAGTTTTATGATTTAACCTTTATGTTG
AATCTACTTCTGTATATAagatataaacttttaattcCACTTGATCTATC
TATACCTTGACTTGTTTTTCGTTTGAAATAATTGTGTAGTgtttgtttta
gtttttatcTGTTATTCGGAGACTcaattgactctctctaattcgatctt
cacgggtccaaaaattttattttgtaaagAGTAATTTATTTAAGCCACTT
TCTAAGCCCCTttggaccaatattttagttcgaatta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066155TCONS_00066155Clytia hemisphaericatranscript
TCONS_00066156TCONS_00066156Clytia hemisphaericatranscript
TCONS_00066157TCONS_00066157Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00066155-proteinTCONS_00066155-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:510556..519842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.93	1.99	1.81	1.44	35.7	28.94	20.06	20.6	9.61	12.32	7.98	8.57	6.79	7.95	6.57	6.81	9.35	10.06	6.66	5.86	5.89	5.96	4.14	5.71	10.42	12.01	5.06	4.33	3.25	3.84