XLOC_041746 (gene) - C. hemisphaerica

Overview
NameXLOC_041746
Unique NameXLOC_041746
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_46:83927..88394+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041746 ID=XLOC_041746|Name=XLOC_041746|organism=Clytia hemisphaerica|type=gene|length=4468bp|location=Sequence derived from alignment at scaffold_46:83927..88394+ (Clytia hemisphaerica)
ttttacagGCGTAGTCCTATTTCTGTTGCCGCAGCTGCCATTTATCTGGC
TTCACAAGCTTCCGAagataaaaaatcacaaaaaggtGTGTATACCAAGT
CAACTCCAGTtgtctttaaccctattcgtactatggggctgtttctgttc
tgTTGCGAAACTATTGGTAATtgctcctgaaataataaagcttttggcat
gaaatttttaacttttatttagcttcaaaataaaaaaagatttgaccACT
AAacattttcacaccttgagcatgatgacacaCAAAAATTAACACAATAG
CTatacaaatttatttattttttcaaatagatCGTTTAAATTGTAATTTA
TTGAATGTTTGGGATAAAATAAGTATTTTAGACTCAgagaacttttttct
aaagcctttgttagaatgtcaaaagttaccttatatgACAAGGAACTTGT
GTGCCAAATTCCATCCAgaaagatcaaaagttaaggggtggtacaggaac
agctccaccctagttttgaaccgcccaTAAAGTATTTAATTTGAATCATG
CATGTAGTTCTATGTAGTCATGCCGTTTTATAAGCCCTGCAAAATTAGGT
TTTTACAATAAAAAGAAGTTCCTTGGGTCCTAGANGCGACACCAGTCATT
CGTGCATCGAAACACATTGCCAAGAAAGCAGTCGATTTGGATTTGGTTCC
AGGGTAATTATTTGTTGAACATgtacaagctttttttataaaaatccatt
tataagaatgtccatgatgaaaatggccaaaaaattaagaataatgctaa
gaatatcaccatcatggaattttgctactcaagctaagaatactgtaaga
atattttaagatgactttcccaaaaaagtaaagaatatcaatgatgaaat
ggatttacacaattcttataaaaaaagtgtgtatcgCAAAGTTAATTGTC
AGGAATAGAAAATGCTCAGAAATTACTGATACAGAACAAGCGGCTTGAAA
ACATTTGAACTAACATTTCTCTAATTGAAAGTCAATTCTAAAAGACTTCT
ATTCGTTTGGAAATTTCTTGTTTGATTTTTATCATTCTAACTTGGAAGTA
TAAAACCAAGTCAAATTTTCTTGACTTTGAACTTTACAATGCTTTCTGGG
TGCTATTTTATTGTTTCCTTTTTTACAGGCGTAGTCCTATTTCTGTTGCC
GCAGCTGCCATTTATCTGGCTTCACAAGCTTCCGAagataaaaaatcaca
aaaaggtGTGTATACCAAGTCAACTCCAGTtgtctttaaccctattcgta
ctatggggctgtttctgttctgTTGCGAAACTATTGGTAATtgctcctga
aataataaagcttttggcatgaaatttttaacttttatttagcttcaaaa
taaaaaaagatttgaccACTAAacattttcacaccttgagcatgatgaca
caCAAAAATTAACACAATAGCTatacaaatttatttattttttcaaatag
atCGTTTAAATTGTAATTTATTGAATGTTTGGGATAAAATAAGTATTTTA
GACTCAgagaacttttttctaaagcctttgttagaatgtcaaaagttacc
ttatatgACAAGGAACTTGTGTGCCAAATTCCATCCAgaaagatcaaaag
ttaaggggtggtacaggaacagctccaccctagttttgaaccgcccaTAA
AGTATTTAATTTGAATCATGCATGTAGTTCTATGTAGTCATGCCGTTTTA
TAAGCCCTGCAAAATTAGGTTTTTACAATAAAATGAAGTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGATGACTTTCccaaaaaagtaaagaatatcaatgatgaaatg
gatttacacaattcttataaaaaaaatgtgtatcgcAAAGTTAATTGTCA
GGAATAGAAAATGCTCAGAACTTACTGATACAGAACAAGCGACttgaaaa
catttgaaataACATCTTTCTCTAATTGAAAGTCACTTCTAAAAGACTTC
TATTCGTTTGGAAATTTCTTGTTTGATTTTTATCATTCTAACTTGGAAGT
AAAGTAAGTCAAATTTTCTTGACTTTGAACTTTGCAATGCTTTCTGTATG
CTAttttattgtttctttttttacagGCGTAGTCCTATTTCTGTTGCCGC
AGCTGCCATTTATCTGGCTTCACAAGCTTCCGAagataaaaaatcacaaa
aaggtGTGTATACCAAGTCAACTCCAGTtgtctttaaccctattcgtact
atggggctgtttctgttctgTTGCGAAACTATTGGTAATtgctcctgaaa
taataaagcttttggcatgaaatttttaacttttatttagcttcaaaata
aaaaaagatttgaccACTAAacattttcacaccttgagcatgatgacaca
CAAAAATTAACACAATAGCTatacaaatttatttattttttcaaatagat
CGTTTAAATTGTAATTTATTGAATGTTTGGGATAAAATAAGTATTTTAGA
CTCAgagaacttttttctaaagcctttgttagaatgtcaaaagttacctt
atatgACAAGGAACTTGTGTGCCAAATTCCATCCAgaaagatcaaaagtt
aaggggtggtacaggaacagctccaccctagttttgaaccgcccaTAAAG
TATTTAATTTGAATCATGCATGTAGTTCTATGTAGTCATGCCGTTTTATA
AGCCCTGCAAAATTAGGTTTTTACAATAAAAAGAAGTTCCTTGGGTCCTA
GATGCACTACAAGAAAGCCACGATCAATACAAAATGTTTTATGGCCccat
tttttaaacctttatttcCTGGTTGATTTATAGCAAATTTGATTTCCTCT
TTTTGTACAGACATTGGTGATATTGCTGGAGTTGCAGAGGTGACCATTCG
TCAGTCATACAGAAGTTTAATTGGAAGGGCTGCTGAACTGTTCCCACCAG
ATTTCGTCTTCCATACACCGATTGAGAAATTACCCACCAGTTGAACGGAA
ATAGCTTCTTTCTTGTTTTGTATCGTAAGCTTTTATTTATTGTTGTAGAC
AATCTGTAGGACGCATGGCACCTGCACAAAGGAATTGTTGGACAGATAAA
TGAACTATTTCAACAAAGTATACATGTATTTACCTCGAACATTGTCAAAA
AACACAGCATAacggaaaataaaaatgaaatctaaAAAATATGCAGTATT
TTTAAAAGGATTTTTTTAACGTAATATATCAAAGTTTTCATTTGAGTTAa
ttgtttttaaatctttttactAAAGCTTCCATTAGTACGACGCGGTTCCC
TATTTTTAAGGACGCAAATTTCTTTCCGAAAACACAGTTATATTATCTCA
CTAGATCGGAGGAAAGAACTGCCCTTAACTTTAaggaaatgttttaaaaa
taggAGAACGGATTGTACCGACTAAGGCTCTGTCCATTATTATGACGACA
GAACAACCGTCAATATTGAGGGAACTGaatgttttcactttttctGAGAG
ATCTTTTAGTGCGAAAGTGGAGAATCTTTATGTTACTTATGACTTTACTT
TCACATTACATTTGATATTGAATCAAAGCTTCTACACCTTCTAAACCATT
CTCGAAAACAGGAATACAAGGAAAACCACCTCCCCTTTGAATCTATCGAA
CATGTATTATTTGCGTTaactttttctgaaagaaagCAGTGTAAActtaa
ttttgttttattttttaccacaagaatttaaattttcgggAATTTATTga
ctcaaaaatgaaaaaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066750TCONS_00066750Clytia hemisphaericatranscript
TCONS_00066751TCONS_00066751Clytia hemisphaericatranscript
TCONS_00066752TCONS_00066752Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:83927..88394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.99	33.9	30.39	32.47	16.17	12.16	26.09	26.1	34.35	30.68	34.29	33.93	31.89	40.93	25.98	25.99	32.58	32.56	29.15	26.26	28.1	27.35	31.11	32.98	37.82	39.06	22.54	22.4	18.8	19.63