TCONS_00066750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066750
Unique NameTCONS_00066750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066750 ID=TCONS_00066750|Name=TCONS_00066750|organism=Clytia hemisphaerica|type=transcript|length=993bp
ttttacagGCGTAGTCCTATTTCTGTTGCCGCAGCTGCCATTTATCTGGC
TTCACAAGCTTCCGAagataaaaaatcacaaaaagACATTGGTGATATTG
CTGGAGTTGCAGAGGTGACCATTCGTCAGTCATACAGAAGTTTAATTGGA
AGGGCTGCTGAACTGTTCCCACCAGATTTCGTCTTCCATACACCGATTGA
GAAATTACCCACCAGTTGAACGGAAATAGCTTCTTTCTTGTTTTGTATCG
TAAGCTTTTATTTATTGTTGTAGACAATCTGTAGGACGCATGGCACCTGC
ACAAAGGAATTGTTGGACAGATAAATGAACTATTTCAACAAAGTATACAT
GTATTTACCTCGAACATTGTCAAAAAACACAGCATAacggaaaataaaaa
tgaaatctaaAAAATATGCAGTATTTTTAAAAGGATTTTTTTAACGTAAT
ATATCAAAGTTTTCATTTGAGTTAattgtttttaaatctttttactAAAG
CTTCCATTAGTACGACGCGGTTCCCTATTTTTAAGGACGCAAATTTCTTT
CCGAAAACACAGTTATATTATCTCACTAGATCGGAGGAAAGAACTGCCCT
TAACTTTAaggaaatgttttaaaaataggAGAACGGATTGTACCGACTAA
GGCTCTGTCCATTATTATGACGACAGAACAACCGTCAATATTGAGGGAAC
TGaatgttttcactttttctGAGAGATCTTTTAGTGCGAAAGTGGAGAAT
CTTTATGTTACTTATGACTTTACTTTCACATTACATTTGATATTGAATCA
AAGCTTCTACACCTTCTAAACCATTCTCGAAAACAGGAATACAAGGAAAA
CCACCTCCCCTTTGAATCTATCGAACATGTATTATTTGCGTTaacttttt
ctgaaagaaagCAGTGTAAActtaattttgttttattttttaccacaaga
atttaaattttcgggAATTTATTgactcaaaaatgaaaaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_46:83927..88394+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066750 ID=TCONS_00066750|Name=TCONS_00066750|organism=Clytia hemisphaerica|type=transcript|length=4468bp|location=Sequence derived from alignment at scaffold_46:83927..88394+ (Clytia hemisphaerica)
ttttacagGCGTAGTCCTATTTCTGTTGCCGCAGCTGCCATTTATCTGGC
TTCACAAGCTTCCGAagataaaaaatcacaaaaaggtGTGTATACCAAGT
CAACTCCAGTtgtctttaaccctattcgtactatggggctgtttctgttc
tgTTGCGAAACTATTGGTAATtgctcctgaaataataaagcttttggcat
gaaatttttaacttttatttagcttcaaaataaaaaaagatttgaccACT
AAacattttcacaccttgagcatgatgacacaCAAAAATTAACACAATAG
CTatacaaatttatttattttttcaaatagatCGTTTAAATTGTAATTTA
TTGAATGTTTGGGATAAAATAAGTATTTTAGACTCAgagaacttttttct
aaagcctttgttagaatgtcaaaagttaccttatatgACAAGGAACTTGT
GTGCCAAATTCCATCCAgaaagatcaaaagttaaggggtggtacaggaac
agctccaccctagttttgaaccgcccaTAAAGTATTTAATTTGAATCATG
CATGTAGTTCTATGTAGTCATGCCGTTTTATAAGCCCTGCAAAATTAGGT
TTTTACAATAAAAAGAAGTTCCTTGGGTCCTAGANGCGACACCAGTCATT
CGTGCATCGAAACACATTGCCAAGAAAGCAGTCGATTTGGATTTGGTTCC
AGGGTAATTATTTGTTGAACATgtacaagctttttttataaaaatccatt
tataagaatgtccatgatgaaaatggccaaaaaattaagaataatgctaa
gaatatcaccatcatggaattttgctactcaagctaagaatactgtaaga
atattttaagatgactttcccaaaaaagtaaagaatatcaatgatgaaat
ggatttacacaattcttataaaaaaagtgtgtatcgCAAAGTTAATTGTC
AGGAATAGAAAATGCTCAGAAATTACTGATACAGAACAAGCGGCTTGAAA
ACATTTGAACTAACATTTCTCTAATTGAAAGTCAATTCTAAAAGACTTCT
ATTCGTTTGGAAATTTCTTGTTTGATTTTTATCATTCTAACTTGGAAGTA
TAAAACCAAGTCAAATTTTCTTGACTTTGAACTTTACAATGCTTTCTGGG
TGCTATTTTATTGTTTCCTTTTTTACAGGCGTAGTCCTATTTCTGTTGCC
GCAGCTGCCATTTATCTGGCTTCACAAGCTTCCGAagataaaaaatcaca
aaaaggtGTGTATACCAAGTCAACTCCAGTtgtctttaaccctattcgta
ctatggggctgtttctgttctgTTGCGAAACTATTGGTAATtgctcctga
aataataaagcttttggcatgaaatttttaacttttatttagcttcaaaa
taaaaaaagatttgaccACTAAacattttcacaccttgagcatgatgaca
caCAAAAATTAACACAATAGCTatacaaatttatttattttttcaaatag
atCGTTTAAATTGTAATTTATTGAATGTTTGGGATAAAATAAGTATTTTA
GACTCAgagaacttttttctaaagcctttgttagaatgtcaaaagttacc
ttatatgACAAGGAACTTGTGTGCCAAATTCCATCCAgaaagatcaaaag
ttaaggggtggtacaggaacagctccaccctagttttgaaccgcccaTAA
AGTATTTAATTTGAATCATGCATGTAGTTCTATGTAGTCATGCCGTTTTA
TAAGCCCTGCAAAATTAGGTTTTTACAATAAAATGAAGTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGATGACTTTCccaaaaaagtaaagaatatcaatgatgaaatg
gatttacacaattcttataaaaaaaatgtgtatcgcAAAGTTAATTGTCA
GGAATAGAAAATGCTCAGAACTTACTGATACAGAACAAGCGACttgaaaa
catttgaaataACATCTTTCTCTAATTGAAAGTCACTTCTAAAAGACTTC
TATTCGTTTGGAAATTTCTTGTTTGATTTTTATCATTCTAACTTGGAAGT
AAAGTAAGTCAAATTTTCTTGACTTTGAACTTTGCAATGCTTTCTGTATG
CTAttttattgtttctttttttacagGCGTAGTCCTATTTCTGTTGCCGC
AGCTGCCATTTATCTGGCTTCACAAGCTTCCGAagataaaaaatcacaaa
aaggtGTGTATACCAAGTCAACTCCAGTtgtctttaaccctattcgtact
atggggctgtttctgttctgTTGCGAAACTATTGGTAATtgctcctgaaa
taataaagcttttggcatgaaatttttaacttttatttagcttcaaaata
aaaaaagatttgaccACTAAacattttcacaccttgagcatgatgacaca
CAAAAATTAACACAATAGCTatacaaatttatttattttttcaaatagat
CGTTTAAATTGTAATTTATTGAATGTTTGGGATAAAATAAGTATTTTAGA
CTCAgagaacttttttctaaagcctttgttagaatgtcaaaagttacctt
atatgACAAGGAACTTGTGTGCCAAATTCCATCCAgaaagatcaaaagtt
aaggggtggtacaggaacagctccaccctagttttgaaccgcccaTAAAG
TATTTAATTTGAATCATGCATGTAGTTCTATGTAGTCATGCCGTTTTATA
AGCCCTGCAAAATTAGGTTTTTACAATAAAAAGAAGTTCCTTGGGTCCTA
GATGCACTACAAGAAAGCCACGATCAATACAAAATGTTTTATGGCCccat
tttttaaacctttatttcCTGGTTGATTTATAGCAAATTTGATTTCCTCT
TTTTGTACAGACATTGGTGATATTGCTGGAGTTGCAGAGGTGACCATTCG
TCAGTCATACAGAAGTTTAATTGGAAGGGCTGCTGAACTGTTCCCACCAG
ATTTCGTCTTCCATACACCGATTGAGAAATTACCCACCAGTTGAACGGAA
ATAGCTTCTTTCTTGTTTTGTATCGTAAGCTTTTATTTATTGTTGTAGAC
AATCTGTAGGACGCATGGCACCTGCACAAAGGAATTGTTGGACAGATAAA
TGAACTATTTCAACAAAGTATACATGTATTTACCTCGAACATTGTCAAAA
AACACAGCATAacggaaaataaaaatgaaatctaaAAAATATGCAGTATT
TTTAAAAGGATTTTTTTAACGTAATATATCAAAGTTTTCATTTGAGTTAa
ttgtttttaaatctttttactAAAGCTTCCATTAGTACGACGCGGTTCCC
TATTTTTAAGGACGCAAATTTCTTTCCGAAAACACAGTTATATTATCTCA
CTAGATCGGAGGAAAGAACTGCCCTTAACTTTAaggaaatgttttaaaaa
taggAGAACGGATTGTACCGACTAAGGCTCTGTCCATTATTATGACGACA
GAACAACCGTCAATATTGAGGGAACTGaatgttttcactttttctGAGAG
ATCTTTTAGTGCGAAAGTGGAGAATCTTTATGTTACTTATGACTTTACTT
TCACATTACATTTGATATTGAATCAAAGCTTCTACACCTTCTAAACCATT
CTCGAAAACAGGAATACAAGGAAAACCACCTCCCCTTTGAATCTATCGAA
CATGTATTATTTGCGTTaactttttctgaaagaaagCAGTGTAAActtaa
ttttgttttattttttaccacaagaatttaaattttcgggAATTTATTga
ctcaaaaatgaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041746XLOC_041746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066750-exon-scaffold_46-1491911889:83927..84011TCONS_00066750-exon-scaffold_46-1491911889:83927..84011Clytia hemisphaericaexon
TCONS_00066750-exon-scaffold_46-1510915933:83927..84011TCONS_00066750-exon-scaffold_46-1510915933:83927..84011Clytia hemisphaericaexon
TCONS_00066750-exon-scaffold_46-1575043694:83927..84011TCONS_00066750-exon-scaffold_46-1575043694:83927..84011Clytia hemisphaericaexon
TCONS_00066750-exon-scaffold_46-1491911889:87487..88394TCONS_00066750-exon-scaffold_46-1491911889:87487..88394Clytia hemisphaericaexon
TCONS_00066750-exon-scaffold_46-1510915933:87487..88394TCONS_00066750-exon-scaffold_46-1510915933:87487..88394Clytia hemisphaericaexon
TCONS_00066750-exon-scaffold_46-1575043694:87487..88394TCONS_00066750-exon-scaffold_46-1575043694:87487..88394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:83927..88394 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.15287	0	0	0	0	0	0	0	0	0	0	0.257366	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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