XLOC_042350 (gene) - C. hemisphaerica

Overview
NameXLOC_042350
Unique NameXLOC_042350
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_476:290456..296214+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042350 ID=XLOC_042350|Name=XLOC_042350|organism=Clytia hemisphaerica|type=gene|length=5759bp|location=Sequence derived from alignment at scaffold_476:290456..296214+ (Clytia hemisphaerica)
TTTTAAAGGCGTTTGACAGCGTTGTCTTTCGTGTCTTTTTTGTATTATTC
GCAAAGTCGCTCTAGTAGAGTATAAGTGAGAAGAGAATTTGATATCTTTC
AAGAAGAGATTTTTATGTTCGAAACTTAAAGCATTTTCTTGCTAATGGTA
AAGAATTTTTTACATTTGAGGTGAAGTTTTAAACCACTATCAAGTGTTTT
AGTAAGTATATTTTCCCACCTACAATCGTGGACATAATATTTGGgacaaa
agggaaatccccagtgaaaatttaaaaccacAAATGATTTGGAAGTGCCT
TAATTTAAGGTGCGAATgtagaattttaactctgagtccaaaaatgctcc
aaaaaggctgagaatatagcctagaagccagtcaacccctccaaaattga
aatattcgatgaggTCAAATGGAAAGCCCGAAATCGTCattttcgcccga
actttaattTCTGAATAACGGTGAAATACCcagaattctcaatatatttc
gtccatgattgtagaattATCAGCGTTGTTGTTTTATGGACTTTCTGACT
TTAGCCTTAGATTTCTTGATGTCTTGTAAGCTAATTTTCAGGCCTTGTCA
AACCTCTTTTCTAAGCAAATTTGTGTACTTTATTATTTAACCTGCATTAT
GTATATGTATATGCTGAGTCATCAATCGTGATCGTTCAAACTTACTGTAT
TTTACGGACTAAAAAGTCCATACGGACTGCATTTAATACGGACTAAAAAA
GTTTATATAATACAAATTTGTAAAACACGGACTTTTTTAATAATTAAATC
GAAAAAGGTTCAGGCACCCCTGCTCGGGCAAGTTACggcctgtgcaaaaa
attaacgaatcaatcaaataaaggcctgtttcgatcgcgcgagcgtgcac
gctagGGCAAAATTTGCTAAAATAGCCTATTGACGTCAcgaattaaattt
tcttgtaCACAAAAAGTGTATGCTTTTgtgaattttcaactttttttgag
cGTACAGGAGCGCACATctcaattgataatttttcaaccaatcaagaaag
agaaaaactgctgagtaaacaaaaaaatgtaaacatacagattgtgtatg
tttttgatggaaatcaaACATTGATCGCGCAGAGTGTGCGTCCAaatcta
ttttaagaattttagcctagcgtgcacgctcgctcgatcgatggaaacag
gccttaaCGCGTGATGGCCAGTTGCATATTCCAccccttttttgggaaaa
ttttttggttattttcactCGTCATTTTAATGTCTTAAAAGTCCTGGGTC
CAAAATTCAGTTTCAgccattttgataaaattaaggaaaaacactttttg
ctgacgtcagcaaaacgtcagcaaaaatttaaaatgctaATAACTCCTGG
AATATTTGTCGAAATGAGCTCATTGATGacccaaaaactttttttctcaa
aattgatgacgtcagcaaaaatcagcaattttcgttttcctcaaaaaatg
ctgacatcatcaaTTTTAGGTCAATTTTTTACATccgcaaaaaatttttg
gaattgaAAGACGGAAAAAACTCTTgcctattgctcattccgacatcgac
tttttatttctgcctatcttctctgaggctattttctgaccccctggtga
cttttctaacttatttactatgttttctgactattCTAAAGTATTTTAAC
TGaccttgaaatatcgacccAAACGGGGTTCGAACCCATATCTCTATCCA
ACCTACCTTcgtacaaaatttgagctcatttcaataaatattccaggaga
tattagtatttcaaatttttgctgacgtcagcaaaaagagttatggctga
aacagaatttttggcccaggactttttgaaaaggtattaatatgaagagt
gaaaataaccaaaaatttttcgataaaaaggGATGGAACAACTGGCCGTC
ACGGCCGTCACGATTCATCGAATCTTTTGCACAGGTCGTTACTTGCGTGA
GTGAATAACGGTTTAAAACCTAAAAATGACCAAATGTATGCAAATTTGGC
ATTGCTCCAAGATTTTAAGTACCGAATCTCTTAAAACAATTATCATTGAT
TACCtcatcggccctttttacaccagCCCTTCATGGCGTTATTCTTTGGC
TGGTGGTGTATAATAAGGGTCGGCGTAATAAGGTGCAAAATTTTCCATAT
TTCACTGAAaagcagcaatatttttggaccattttttctcaatttaaggG
GTTTCAAGTGTaattataaattaaaaacaacCATGTTTTAATCCGTACCC
AAATATTCGCGAAATATTGATATTTAATGTAATACTAAAGTCCATTTGCT
TTAAGTGTGCTCTCTTTTTTGCTACCATAAGGAAACCAGTGTAGTTAGAG
TAgttcccttgagagtggtttccacatggtAGGAAAAAGAGTGCACAATT
AAAGCGAATAGACTTTAGCCCACCACGCGATCTTTTATCACTTTGTGTTA
GGAAAAATCCTTGTTCGTCTGGTACAGCCTAAATTTAATCTCTTTCCTTT
TTGTTCTATGAGCAGTTTGAAGGTAATACAACTATAAAACATTGCATGGA
AAATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTGGCTGTT
GTTGTATACAATTTGATAGTTTACCTAAACCATGTATATGATTTAAAAGA
CTATCCCCCAGGCCCTTTTCCTCTCCCTTTAATCGGGAACTTGCATTGTA
TTGATTTTAAAAGGCCTcataaaacatatcaaaaactgacaaaagcTTAT
GGAGATGTATTCTCGATCAGCTTTGGTATGGAGAGAATCGTCATGGTGAA
TACAATAGAACAAGCCAAAGAGGCGCTCGTGACAAAATCTGCTGAATTCG
CAGGTAGGCCATCAAACCACCATGCATTTGCTATGATAACAAGAAATTAT
CAAGATTTAGTCTTTGCTGATTATGGTTCACACTGGTTAATGCTTCGAAA
ATTAGCAATCAGATCCTTAAAAATGTATGCTAATCTAGATGGAAAACTTG
AAGTGAAAGTTGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAG
AAAATTAATGAACCTGTCAATCTTAACGTGGAAATAAGTAAGTTTTTTCA
GACAGTTTCTTTAGAAATTATCTACCGAACGTCTCTAATTTCCTCTGTCA
AAAGTAAAGATATCTGCAATCAAagccataatatttgagaaaaaaaggga
atctactgggaagtttttgaaccacaatcgatttgtaagtgctcctCATT
TTTCTGACACTATCTACTttaagcgtacaaactttcgcgaaatttacgac
atttactttcgcgaatttaaggaacaaatatttttcgcgagcataaacct
TCGTGAATTGGGTGATCCAAATGAGAGgtcgaaaattcgcgaaatttacg
acatttactttcgcgaatttaaggaaaaaatatttttcgcgagcataaac
ttttgtgAATTGGgtgatcaaaatgaaaattttcacaccAAAAATAGCTT
AAAAGTGACAAATGCTTCTTGAATTCGATTAAAAACTGGTAATATATGAC
TTGAATGAGGCTTTCAAGGAATAAAAATGCTATAATTACTATTTTGTTAT
TCTGATTTCAAAACTTTacagattttcaactttttcaagaattttttgtg
agcataaactttcgcgaatcgccttgttaagaattttcaaagacattttc
tttcgcgaaaaaggtcaaaattcgcaaaaatcttgAAAGTTTCTGCtagc
gaaagtttgtacgtctaATACTTGAACGCCCCTGTCTCATTTTTCTGACA
ATATCTACTACTTGAACACCCCTGTGAGGTGACTctgaataaaatcaaaa
tttgagataAAAAAACTCACTGGGGTTGAAATTTTTACCTTCACCGGGAT
AGGGAGAAATATTTTCCCTGAGTTCAAACTATAAAACTGATAACCTtagt
atattaaaaaaagtcgaaaatgaagatgaaaaatgaataagAAAAAATCA
ACTCCTGGTAGAAAAGCTTACAATATTGAATGGATTAATTTTTTCCCACT
TTTAGGGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAA
GATACGAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAAT
AACTATTTACATTATGCTGTATATCATGGTGatccaatttcaatttcaaa
atggcagaaATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACT
TAGCAAAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACG
AACTTGAAACCggaaatgttgaaaaatatgttGGACTTGTTTATCCATAC
ATCTAGTGATGAAgagtttcttaaaaaacatgGAATAAGCGAGTTAACAC
GTGACACGATTGAAATGGTGATGATGGACCTCCTTGATGCAAGTGTTGAC
AATACAGCTGTAACTCTTTCTTGGATAATTTTGTACTTATTACATCATCC
AAAATACATGAGAGAGGCTTACAATGAGATTAAACACATGGTTAGTGCAA
AAAAATACCCAAAGATGAGCGATCANTCCACATGGTAGGAAAAAGAGTGC
ACAATTAAAGCGAATAGACTTTAGCCCACCACGCGATCTTTTATCACTTT
GTGTTAGGAAAAATCCTTGTTCGTCTGGTACAGCCTAAATTTAATCTCTT
TCCTTTTTGTTCTATGAGCAGTTTGAAGGTAATACAACTATAAAACATTG
CATCGAAAATGATACCAATGATATTAGAATGGATAACATATCTCCTGTTG
GCTGTTNTGAAtggaaaatcaatcaaaaagggTACTCAAGTGTTGTTTCA
TATTTGGAATATTCATCGAGACGAGCGGTACTGGAATGATCCAGAAATCT
TTAAGCCAGAGCGTTGGATAgatgaaaatggaaattttgcaCCAAATNCG
AGACGAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGA
TAgatgaaaatggaaatttttcaccaaaaatttGTAAAAGTTACTTACCG
TTTTTGATGGGCAAGCGCGTGTGCTTTGGTGAGCAAATTGCAAGAACAGA
GTTATTTATAGCTCTAACAAGATTATTGGTTGATTTTCATATCGAACCAG
AATCTGGATTGCTGCCAAGTCTAACTGATGTCACCATAGGTGTTAACCAA
TATATGACACCCTTGTACAAAGTAATTCTTAGAAAACGAGATGTATAAGA
AGAAGCCGATGGCTATCATCATATCATGTAATATCAATTAATGCTTTTCA
TGATGCCAGAGCATGGGAACGTCTTCAGTCTTCTACGGTATCGATACCGA
TAGTGAACAGATAGAAATTGGATTGAAAACTCTAttattctttgttaaaa
attataaaaatatatacaaaatatgATAAATATATAAATAGTTTAATATA
ATAGGAAATATAATATCACGGGTATTACTCTTAAAGTGCATCAATCTGAC
TTTATTTCATAGAAGTCATTTCCTTGTGGTCGATGGTGGTGGTTATTTAT
AcaagaaacttttttgattatATATCTGTTGACGTATTTCtttactaaaa
ttttattacataAATTTAACTATGAACTCCCTTTTACTCCCGCTTTTACT
TTCTAAACAGCTAGCAGTATTCAGGAGGGAACTATTGCTAGGTTGACACC
ACTTGATAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067813TCONS_00067813Clytia hemisphaericatranscript
TCONS_00067814TCONS_00067814Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067813-proteinTCONS_00067813-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:290456..296214 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.36	66.4	14.72	7.99	1.59	1.75	4.38	3.5	0.7	1.93	3.74	0.89	0	0	0	0	4.02	3.73	0	0.02	15.4	12.89	57.36	49.37	0.7	0.41	3.28	3.57	24.63	28.92