XLOC_042388 (gene) - C. hemisphaerica

Overview
NameXLOC_042388
Unique NameXLOC_042388
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_477:2605..6642+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042388 ID=XLOC_042388|Name=XLOC_042388|organism=Clytia hemisphaerica|type=gene|length=4038bp|location=Sequence derived from alignment at scaffold_477:2605..6642+ (Clytia hemisphaerica)
TAAAAGGTTTTCTCAAAACTCCTTTACTCGTTCTTTATTCAGGATGGCAC
AGGTTGACAAAGCCGTCACTGGTATTGTCTCGCAGCAAGATGAATTCTTA
ACCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAGGTGCTCC
AATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGCGACAGGAGTTG
AAGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCATTTAACT
AATACAAATTCATTGCGTGATTGTCTTATGCAAGTTTCACAAGCTGGGAA
AAAAGCCTTTCGAACAGCCGATGGAAATATGGAATACATATCAATGAGCT
GCGAAAGGGTAATTATAgatttataaaaagttttcttattttgtcTTATA
TGAATTCAAAAGGGGTTTATCACTCGCTAGATAACAAgtattcccggggg
gggggtactagggttggcgaatgaggggtatgtgcggacgggaactccga
aaaccgacccctagagagactgatttttgctgaaaaggtgacccttagag
aaactttttgaattttttttttcgatttttgaaaaaagccatacccttag
agagactttattataattttttctctggaaatcaaaaaattttctaaaaa
tcctgaattttccgacccttagagagactaatttaaaactttctgatttt
ttccgacccttagagagactttgaaaggtgaaaaaaccgacccttaccgt
tcgcacatacccatcatccatttttgcataagtaccccccccccgggcaa
gtACTCTTGAACACTTTTACAAAGCATCCCATAAAAACCCACGGTAGATC
GAATTTTCTTATTATCTTGGAAAAAGTTTCATTTCGaatttttgctactt
tttggTTACTTATGTTTTGGCACAGTAGTACCATAAAGTCTCCTGATTTC
ATCTGTATACTTTCTGAAAAAACGGGTGCTTTTCGACTCCACCGAGCTAC
CATCTAGACGCTTTACTTTTGGTGCAAGTATTTTATGAGTTGCAAGTATT
CTATAAATATTCTCCGAAAAATGTAAACGGAGTTACTAGCAAGATTTCAA
CTCATAACaaattatttcaatatttgaaaTGAACATTCTCACGTATTGTT
TTTGTTGGATTCGCTAGTTGTCATGGATGCTTTTGTTCTCCGAAATGTTA
AACCCACGGTATCCCACAGCGCTTATTTTTGTGATTGCGTGACGGAAGGA
TTTTTTTGACGTGATGGCGTAAATTTTTGGATAAAACATCGGGATCGCAT
TGAAATGAAGTGCAAGTGCAATCGTGCATTAGCTTGATTGTAAAAACCAC
AATTATTACGCGAGTCAAAAATTAGTACCTATCTTAGCCAATTCGATTCA
TGGAGTTTACTCCTAGTTACCTAGGATAAACCCACTTTTCACAGAcctga
tttgattttttcagccagtagtGTTAATCATAACTGGCTGAAACTcgatg
tttttatggctggggatttgaattccattgttttcaagtcgatGGGAAGA
ATAgcatattttgcagtgaagataggtttatttgattatttccaCCGAGG
ACGATATCTTGGCCAAttcttccagtgggaaggggtctcaATGGTAGAAT
CTTTGAGGTATGGGTGTTAAGATGTAGGTTTTAAAgcctgattttttttc
aaaaaatcgaccCGTGTTTATTGCCTTGATTGACTGCTATCTTGAGAACT
NGATCTTTGAGGTATGGGTGTTGAGATATAGGTTCTAAAgcctgattttt
tttcaaaaaatcgtcCCGTGTTTATTGCCGTGATTGACTGCCATCTTGAG
AACTTTCTCGATACTTATTACCCATATTATTGAATGAAATGAAATAGCAA
GCAAATAAGAGTCTAATCGGAATTATGGTTACGCCTCCTACACCCTAATA
TTTTGTCCTCCGAACAGCAATCCATGGCATTGGTGTTGATTCTCTGAACC
TCGTTCTAAAGAATGGCAAAGTATCACTCATTACTACCCCAAACAAgata
tttcatttcattttttaattgatATGTCTCGTGTAAACCAAAtctttttg
tgaaatatttaagaaaattgaGTCTGTTTGAAGGGCATCTTctatgagaa
aaataattatgtACTTGAAATCAGAAGGCTTTAATAAGTACTTCTGTACC
AGAAATGAAGTCTCGTGAAGCAAAGTATGATATTTCCAAAAGTAGTTTGT
AATCTATTCTTTTAATGTCATATTCCAAGGATTATCTTTGCAATCTTGTA
AAAGAGTTCTTCAATCAGTTAAAATTGACAAGTAAGATACAAACAACAAA
CTTAAAGCaaaaaggcttaaaactcaatatTTGATTAAAACCTTAGCAAA
GGTAATCCTTACAGCTTAATTTTAACACCATAGGTACCTGGATTAATGAA
ATCTGCATTGAAAATTCTGTTGTCTCCAGAATCGGAACCTTCAGACATTC
AGAATTTTCTTCCTGAAAGACTTCTGgcaatcaaaaaagtttccGACGAT
GCCAAGGTTAAATGTGAAGAGGTCGTGAAAGAATTTACGCATGTTATTGA
AGTTATTGAAGAAGTTCAACTGGGTGCACTTGCCAAGCAGACCGATGTAA
AAACTGCTCTAGAGCATCTACAACTTAATATCGATAATGCTAAGCGAGAG
AGTGAACGCTTGGATCAGGTTACAAAAGCGAACGAAAAGGCATTAAAAGA
CATGGAAGGACAAGTCAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGG
CTTCTATGCCAAGTGCTCAAGATTTGATGATGGCATCGCTGACTGAAAGC
TTGACAAGCATCGTTAAAACTGGAGCAAATGCTGCCGTTCAAATGGGAAC
CCAATATGCNAGCATCGTTAACACTGGAGCAAATGCTGCCATTCAAATGG
GAACCCAATATGTAAACATGATGACAATGAGCGCCATGGGCGGAATGGAT
GATATGCCTCCTCAACAAATGGGTGGTATGCAAAATCCTCAGCAAGCACC
AAATCAAAATGTGCAGTATCCAGCACAAGGCACACATGTAGAAAATCCTA
AGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAACAGCCAAATCAAC
CTCTTCGCTAATCTATTGCTGAATTATTTTGACGACAGTGATGGTGATAT
CAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAAGATATACAAGTTG
GTAAAATCCTTGAAGCTGAAACCTTTTTTAATATGATGCAAAATAATATT
AAAGGTATGGACGCTGGAGAtcacaaaacaaccaaaaaccaACTACTGAG
ATTGATTGACAATGCCCTCAAAACAATTGAAGGAATCCAGAAGCTTCCTG
AAAGCGTTGCAACGATTCAAAAACTCTTCGATCAagcagaaaaaatcatt
tcacaATCAGACACGATCGAATCAAGTTTAAAAGTCAAAGCAGGAATCTC
TCAATTTTATAATCCAAATCCAACTCTACCACGATCACAGGCACCATCAG
GCAGCTATGGCAATCTCTCTCAAACCATGAATGATAATGCTCACAAAAAG
GTTGAAGCCTATCGCTCACAATTGGATTCTCTTCGAATTCGcgctgaaga
agaaaaacagcGGTTTAATGCATCACAGCAAGTTTTATCTGGAGAGATGA
GGAagttagaaaatttcaaaagtagAGATGCAACGAGTTTTCATATGATC
AAAGTCTTAATGCAAGAAAAGNGAGAGATGAGGAagttagaaaatttcaa
aagtagTGATGCAACGAGTCTTCATATGATCAAAGTCATAATGCAAGAAA
AGATTGCACTTACTCTAGTCAAAGAAAGCTGGGCTGACCTTGTTCAATTT
TTTACCTCAATGTCCAACTTAATCATTTCAACACTGGCTCCTTCATTGAA
TATGTTTGTTGCTGACTCAGAGAGAGTCGCTAAATCCAAATCAGTCAAGA
ACATGGCAACAGAGGTCGTATTTCAAACAGCTTATCAN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067863TCONS_00067863Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067863-proteinTCONS_00067863-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:2605..6642 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.06	0	0	0	0	0	0	0.02	0	0	0.02	0.06	0.48	0.01	0.02	63.04	49.39	0.05	0.02	159.43	157.52	9.4	18.61	28.24	27.37	17.45	13.99	0.5	0.58