XLOC_042396 (gene) - C. hemisphaerica

Overview
NameXLOC_042396
Unique NameXLOC_042396
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_477:139829..148999+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042396 ID=XLOC_042396|Name=XLOC_042396|organism=Clytia hemisphaerica|type=gene|length=9171bp|location=Sequence derived from alignment at scaffold_477:139829..148999+ (Clytia hemisphaerica)
TTTTATAGACtataattaaagaaaaaatgtctTTAGTGGCTGCTTatagc gaaagtgaaagtgaaaacgAGAGTGACCAAGAACAAGAGAATCCAAACGA AGTAAAAGTTGAAACTGCAAAAACAACTTTAAATGTCCACCAAGCTGATG AAAAGCCACCGGTTGAAGAAGAAAGAACTggttttgaaattgaagatgag GATGATTGGCAAACAGGTGATAGTGTAAACACAGCCCAAACCACAAATTT GGGAGGAGAATCTTCTGCTgagtttttttctaaacttcCTGAGCCAGCAG CTATTGAAAGTAAATCAACCGCTCCTATAAAGGTATTTGTTAAGAATTCT TTTTGTTTGTCCAAATCTTTTGCATctcgattcttttttttttgcaattt acCAGAATTTTTCTACCCTGACTGTTGTAATCAAGGTCGATATTCAAATC TAAGATGTTTTCTGTCGATCCTCTGTCTGGTGAATGTGTTGGAAAAAAAC CTGCCAAGCAAGAATTATTCACTTAGACGTTATTGCTGTACAGtaatcaa aaagtatgcaactTGCCTTTTATTCATagcaaaagaaaatttcacaataa agctaaaacaatacattaccAGACtggagttttttttataatgactatgc tgTGTCTTTCAATTCGTAAGTCCTTTTTAatagagaaaacaatttatcag aATACTTCCCTTTTTGGGTGAGTTTATGgcttgttttcaaatttttgcaa agtttttgaatattttatttcgttattgaaaaagattgaagaagaagaag atgaattTTTGAAGAAGAAACCATCCCTGGAagacaaattattcaaaaaa gagCAAGCCCTATTGGAGAAAGAACTCAACGAGAAGAAGAAGCATGGAGA TAAAGAAGACTCTAAACATTTCTTGAGCAAATTCACTAAAGGTAGTGGCG GCGGTGGtggaaagaaatcaaagaatcAGAAAGTATTGATTTCCATACCA ACGCTAGAGGATGTAAGTGtgtttttcagaatattttggAGACATGATAC ATATGTAGGTGTAATGAGCAGCAATTACAACCAAAAACAATAATCAACCA TAAAATTCTTTTGCACAAGTCGCTGTAATTGGGAGAATGTTTAACTACTC GTGATTTTTATAATGTTATCCTTTGATAAGGTATTCAGTCCCTTtacaca aattatttttatttggtaATTTCTATTATCGACTAAGAACTATTGttata ttaaaaaattattcattAACTCATTAAACAGGATCATGGATATATGGTCC TGTatataaatgaaacaaaaaGTTGCGATGAAAGGAATCATTCAATTTGT ATTAGCTGGTCTTTACTGAGCAATGTAGTGTTCAGTATTTGTATATTTGG CAATTATAGGGGCATGAAAGCTCATAAGTAttggatttttttgttgttgt aatGAAATAATATcatttaatttgtaaaaatacgATCACAATTGACTTTG CCATGACTTCAGATTGGAGCTGACAGTGATTCCGATGAAGAAAGCTACCA ACCCAAACAAGAACCACAGAAATTCATGGCTAGTAAGGTATAATATCTAA TTATACGTGTAGATAAAATGCTTTTGAATTATATATAAAAGGTCCCCCTA TCGATTTATTAATGAAGGCAGATTTCAACCCTTTTTcgaattccaaattt taaaaatttagcattcctttatatttttttaactttcaacAAACCgttta aaaaaattaggaaCTCAAAGTATGTTTCTGTAAAGTTGCAAAAAGTACCA CCAATTGGGGTTACTTTTAAAACCTCCAAACAGCAGACTCTGCATGTAAT TGATTAATTATTTTAGCTGGCTGGAATATGATATAATTAAAAGCATGTTC TGAATTTCTGACAAATAAATGAAGGACCAGAAGTATTTTTGGTCCAGAAT ATGTTAACTTTAACTTGTGAAAGTAACCCTAACAAAGTTATGTAAtgctt tttaaaacaaaagttttcttttctaaaGTCTATTCCATTGAACATATAAC CTTAATCTAGTGTGGAATCTCCTATGAAGAATTGGGAGTCATTTATTTGC CTGTTAGACCGCGCGACCCATGTGGTTTACATACAAACGCTAAATTGACA AAGAAAAATGCAAGATCGAATCCGTCATTCGAAATGGGgcgacaagctgg agtttttacaagctcttatttgatttggttggtcgttttaagatgtaata aaagaatcttattactttttctaaagaacgcgtcatctctatcactttaa atgaccaattagtgaagtattttgtaaaaattccaAGGCATCTCCCGAAA TGGGGTGCAAATCTTTTAAGTGTTACTTTTGCTCGCCTGGCAAAGGTTAA AGATCCCTCTCTAGCCTTAGACTAATCTCATTGATCTATTCTCCATTTCA GAAACCTTCAGAGCCTTTGGCTACTCTTTATATtatgttcatgacgtaat cttttgtACGGAAACACTCGAAAAACACTGCGCGTTTGCCACAAGGTTCA CAGTTTAAATTTAAAACTGGAGGCAAACTCCTGGTgttttttgggtgttt ccgtGTAAAAGATTACAttatgaatatcaagaataacTCATTGGCCTATT CCCCATTTCAGAAATCTTCAGCATTATTCGCCATGCTGCCAAAGCCGAAG AATAGCGTAACAGTCAGTGCTAACAAGAATCGTGTATTCAATCGTGAAGT GAACAGACCCTTAGTACCACACACTGTGACCAAACATAAACCTCAAGCAA AAGACACTTCTTCTAAATCGACCAGTATTAATGTCAACCCTGAAAGAAGT GTTGCTACAGGAAATTCCAAAGTCAAAAATGATGTAGATTCGGAAGAGTC TGAAGATGATGACGATGTTTCTGCCACAAGCTTTTTCTCTTTCGGCGAGA AAAATACAACCGAAAAGAACACACCTATGGAAATGAAACCCGATGAAGAA GTTCACAATAAAAAGGAGAATAATACCAAAACAGAGAATATATCAATGGA AATTGTTAATGAAGTGACTTCCGTAAAACCTAAAGAACGCGAAACAAAAA TAGAACCGAAACCCAATAAACCATCCTCCAATAACAAAGACAATTCATAT TTTTCCACATTGTTTAAAAGTAAAACGAACTCGCAGACAGCTTCAGTAAA AACCAATAAAGACATTTCAAATGACAACGATGTTAGAACTTCATGTACAG ATTCGAATACAAAGAGCTCGATACAAACTTCTCATGGAATCACAGCACCT TACGGACATAATTCTAGTGATTCTTCAGTAACTGCTCCATATGGTGGAAA TAGCTCTAGTGTAACTGCGCCGTATGGGTCTAGTAATTCTGCAGTGACGG CGCCCTATGGATCGGGTAATTCTGCAGTAACAGCGCCCTATGGGTCCGGT AATTCTGCAGTAACGGCGCCCTACGGGTCACACAATAGCATATCTCAACA ACACCAACAGATGCCTCAGAATCATGGTTACCCAACGAACGCAACTGACA ATACCTTCTTTTCATACTCTCATGCAACTTCTACTAGCAGCAGTCAGGTA GGTTGATGTGTTTTTATTGtgagcgaccgtagtgcagtggtagagcatcc ggctatgTGCGCGAGGACGTGGGTTAAATCCCCGGCCggatcataccaaa gacttcgtacgaaaatggtacttgatgcttctctgcttgatgctcagcaa ttaagagaaggaccaagggtaagtggagcaattcaGGGAGAAAGAATGGC GGTCTTCCCATCtgtgggtagatagctatcgaaagaggagccttcgggtc gcctccgactgcggtcgcggCGGTCGCAGACTTATTGTGTAAAGTACGAT TTTGGCCTGCGTACTCGTTACTTTACTTGGGATACTATAGGCAATTTGGT GAAACTTTGACATATCGTGAATCGATCTTTACAAATTACTTCGTGCGGAA AACCTTTTGCGAGTCGTCaaactttcttcattttcactaTTTCGTTAGAA GGTGAactgaaaaattacttttacaTCCATCAACGTAAAGAATTATTTCT AtggaaaaatcattttctcTAACGAGAATGAATTTACGCGAATCAGCTTT TCAGAATATTTTGCGGAATTAACTTTTGCATATTTgccgaaaatccgcga aaacttcgatttgaaaaaatatgtttattttataaaacaaaatatttttt gaaaaataaaccttaTGAGACTTGATTATTTTGTTATAGCAGCCAGCACA AGCATCTATGGATTTTTACCATCAACCAAATGAAGACACGCCAATTGACC AAGAAGCTGTAAGTCTTTACTTTGTTTAAACGACTAATTCTATTTTTGCT TCTCATGATTATGTAGCTATCTGGGGAACAAATCTTTGGAAATTTACGTT TTGCCAAACTGAAAAAAGATCGCCCCTCATGAAGTTCTGAAGTTCTTTGA AACGATTTGTTAGGGCTCTTaccaaaaattacttttttctaagattattc AGAGATCAGTTCTTGAACCAGTCTACTTGAATTCAAAATACAACACAACA CACAAAGTTTCTTAGGCTTctgttacatgttttttttctataagcatacc gtttataagcatatacaggCTCAGTTGTtagtacctaaacaatggctttA TTGTTTAAGAGCAATAGAATCCCTTAAGCATTATGCGAGCCTGGTATcac aggaaaaagtcatcagATCACACGGGTGGGAAAACTTAAATTCCGACgcc gtaattttcaaaaatcaatttttgcgtGTGATTTTATAAACTGATAAGGT GTGATTGTTTTGGCAGTGTGATTTCCGATATCACACTGtggaatttttca aatagttatttttattttttgaaattcggCGTGTGAAATCCAATTCAACA CTTTTAAACTTCACTGAAAAGGCTTTATCGAAATGACACGTGTGATTTCT AATTTCCGCAGGCAAATAAAGTTTTTCAGCATGTTGTACACTTTAAATTT TCGGCgtgtgaaatccaatttaatacTTTAAAACTTCACTGAAAATGCTT TATCAAAATCACACGTGTTAATTCTAATTTCCGCAggcaaataaaacttt tcagtaTGTTGTACACTATAAATTTTCGGCgtgtgaaatccaatttaaca cTTTGTCAAACACTGGCAACACTAGTCCAAGAAGTATAAAACTTACacta caaaactctaaaaacgtAGAAGGACAAGATAGAAACAAGAAATCGCAGTC ATTAGTTCCCACGGGTGGGAAAGTCAAATTAACACGGTGGGAAGGTACGA TTCCCACCCTTGTACTACGCATGCGTAAGGAAAACCACAAGTGAAGATTG GGCCAAAACTGTTCAGATTGCATTCAAATCATAACATTATAAGGGTGTat tcgatcagtgtgtaacacaacgctAAAGGCGAGGCGTCCCGCAAGGGCGG CCTCAttcgttcgcaatggacttgcatcgcaagggctcagtggatcggcg agacgggtttgaggtcattgaattggctctctagtgcagctccactgttg tgacaaaagtgccgggattctcaaagtagcgcaagtacatgacagaacga atggaagctatcgagccaatgctcacgaatgatcgaatacatttaacAAT TTATCAAATACAAATCAAAGCCATTTTCCAAAAACTTGGTGGGGAATCAA AATTTCTGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGT GTGGTTTTCGATAAGATAAGCGAGTGTAAAATGCTAAATCCGACGTGGGA TTTTCAATTTAACACGCGAGGAGAGAGGGCCTGAAGTCAGAAATTCGACA TGGGATTTTAGATTTAACACGTGGGATTTTCGATTTAACACGTGTATTGT TCGATTCAGCACACACTGTTTAAAGCGTGTGATCCTGCGTTAACCACGTC GGAAATTCAATTCTACACGTGTGATTTTGAGGGGTGTGATTTCGCGTTTC CCACCGGCGTAAAAACGAACCGATTCCCACGCGTGGGATAGCAGTGTGAA ATGTATACTTTCACACCGTGTGATTTTCACTTTCACACCTGTGTGatttg atgactttttcctgtTTATAGGGGTAGACACTTTacttttgcttataaaa aaacatgttgtAAAAGTCATTGATTTATTTAACATTCTTTTCATTTAAAG ATGAGGGCGTTGCAAGGGCGTAAGCGAAGGAGAGGTGAAGAGATCAACAT TATTGATGTCAACGCACAAGACCTCCAAGTTGACAAAGATGAATACCTCA AAAATCTCACCGTCGAGTCTGGATATAAAAACAAAGCTGtaagtttacac gttttttatgagagcatccaaaatttttcaattcttgcgatgttctttac tttttgtatttgaagcctaaaaatgttcttaatgcgttcttactttcacc attttgtaagtatttttgtccaattttttaagaaaatgggtgttttagag tccgcgaagccttaaatgttcttaacttgtccttaatattttggccattt aagtcttatgttctcatatagttcGTATAAAAAAACGCGTACTCTGCACG ATTTCGATTTAGAATTCGATGGGATAAATTTGGGTTACCACTACCGTACT TTTTCGTATTTGATATCGACAAGATAATTTAATCCCGAAGTGGGCGGGGA GGGGTATCCAATATCTTTCAGTGTTAGATTTTACAAAGTAAAAAGGTTAA TGGGAGAAAGGGGACAATATAAACATACACAGAGAAGGTGTGacacagta gcgtggtgggtcgactaaaCCTTGGTAGGCAATCTAGGAAGACTTTGATT TTGGTGCCCCctatgaaaagtaaatatttctaaaaaaataacgCGAGCGT gaatttttgggtattttctctctttttggccgaaaactgcTATATTtaag gtgtaaaagagcaaaggggCGTCGAAATTAGTAATTAGAGGCGTCTTTTT GCACCCTTTGTTTTTCGGCGCCCCTCTGAAAAGCCTTGCTGGGGGGGGAC ATTAGCTGGCCCCCCCCCTGTCACTACGCTACTGGTGTGACaggtcaaaa agtttcttttgtgCTGGGTTTAAGAAGCGTAGGATTCGTCCtttgatctt tttttaaagGGAGAATGTTCTCTTTAAAGCTATACTTTGAGACAACATAC GATCTCGCCAAAATGGAAACACCAATTTTgaatacaaatttccaaaaata attggCATTGAATTATAAAGATTTTTATACTAGGGAAACATAAAACTATC CAGAAATCTAGTTCTTTATTTAGTTTTAGTTGTTTCGAAGAATAGCTTTG GAGAACCATTCCCTTTAAGTCTTTAGAATCCTTTACCATCTAGCATTTTc ttattgtttttcttttctttacagCCTCAAGATGCCGGCATATCTAGTCA ACAAAAACGCAAACATCAAATCACGTATCTGGCTTTTCAGGTAAACAATC TAGGTTTTCTGTTGTAACCTTTCATAAGTGGCCCGGTCAAAATTCAGTTT CTGTTACTAATTTTCCACTTatgatttttctcaaattatAAAGTTGATAT TTAAAAGTTAATGTGTTAACGTCTTAACGTCTGGGGccacttgaaacatt tttcaccaaatagaaacatttgaaaactgGAACAAGCAGAAAGATTCACT TTGATGGAAAAGTTGCTAGTGACCCCACCTTAAATGACGGAACGAAAACA TATACAAATCGACTTCTGGAACAaaaaaaatggttcaaaaaattcATGAA CAGTTCCTGTAGTTCCAGGAAACTTTTTACCTTTAACGACAGTAGTTATT GTAACGTcgaaattgatttcaaaaacctttttccAGTAGAGTgcaaaatt ttgatcaaatatGCAGAAAAAAGCCAAGTTAAACTACCCAGATAAACTTT GTTATAATTTTATTAAACCAGGAAAAAAACTTGAAAGTGTCCTAgaaaat ttattattattatcatagGCAAAAGAGCGTGAATTTGAATTGCGCCAATC GTGGGCTGATAGCCGAGCGAGTAAGCAACAAACACAATCCAAGTATGGTT TCTGAGTTGTGTTGAAGCTACACCCTCCCTGCCCTGTCTTGGATGTTATT TGCAGTCCCCGAATGTATCAGAAGTTTTTTGGAATTATTCCTGGATTGAA TTGGATACCACGAGATCCCACTCCTCCTGAAATTTGACTCGAAGCCAAAT GACGAGCAAACTATCTGTGAAGGCGTACCTACCACAGACCTgaaagggtc ggttttttccgATTTGCCAGATTCACCCATGTTTGCTGTTTTGTGAAGCT TAGCTGTCGACTTTCACAACTCAATGAATCAGTCAAGGTCATGATGACAG CAATGAAAACAATACGTTTAATGAACGATGAATTTCCAATGTGGAACTAT TGAAGAACGAATTCAACCTGATATATATTGATGATAACAGCGACTTTAAA GTTTCAATGAGGCCGTTGTATGCTTTCATAAATGGTTTTTTGAccagaaa aagaaatttaatgaaGGATACTTAAAAAATAATAGATTCAACCTGAGAAA GGTTCATGGAAATGGTGTTGTGTAAAATCCGGGGGGGCActtgattcaaa aacgaccatacgtgtggcccaaaattaggcctttgaaatcgtaCTCTAAC AGTACAGGGagaattttgcaaattttgagcaaattttagcgaaaaatcga cccttacgtgcattttcttgaaagtttttttaccattttttcaggcaaaa tatggtcagattttcgaatttttactCCTtgagagtgcaatttttcttat ctttgcTGATTatttgacccttacagtgcactttgggaatgttagaaaat atacccttaagggtcacacgtatggtaggtcatttaccttgagtgccccc cccccctcggggtAAAACGAAACTATGTTTTGATGATGGTTTTTGACCAA GAAAAGTCaatgaaagatatttaaaaaaagtttaatgGATGAGTTTTTAG AATATATAAACCTTTTGTTGCTTGTATATAACGCTTTCTTACAAATATCA AGTTCACTGATTATTaacaga
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067881TCONS_00067881Clytia hemisphaericatranscript
TCONS_00067882TCONS_00067882Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067882-proteinTCONS_00067882-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:139829..148999 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6 15.91 5.74 3.46 18.7 13.99 15.9 16.79 11.25 11.88 11.73 8.94 8.88 9.96 9.24 10.56 12.81 13.63 7.82 6.89 12.5 12.41 21.15 18.63 13.01 13.48 8.3 6.85 16.66 18.93