XLOC_043048 (gene) - C. hemisphaerica

Overview
NameXLOC_043048
Unique NameXLOC_043048
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_493:200973..210007+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043048 ID=XLOC_043048|Name=XLOC_043048|organism=Clytia hemisphaerica|type=gene|length=9035bp|location=Sequence derived from alignment at scaffold_493:200973..210007+ (Clytia hemisphaerica)
CAGAGGTCTTCGtaggggaattttttttgaaaattctaagaagtaaatct
aatttttatttttgtaaagtaCCTTCATTGGTGAAAAGTCTATAAAAGCG
CAAATACCTGTGTTGTTGTTATGAGAAgttgaatgtctttttttatgcTG
CTACTTTTACAACAAGAGAGAAGATCGAAAATTTTAAAGCAGAAAAACGA
AGTCCAGCGCCGTTTATTGAAATACAGTATGGCATCGTCTGGTAAGCCAT
TCGTTTTAGTATCCCCTAAagcccggggggagggggtacttaggcaaatg
gaggatacggtatgtgccgcccttaagggtaccttttttggatttccaaa
gtcccactaagggttggaaaaataggaaaatttcagctttttaccccctg
aaagatcaaaatttgatcaaaattggtcaaatttgtcccgctaagggtcg
taaaattcccaaaattttcctctgttttctcctttttagtcccggtaagg
gtccaaagttcaaaagtcgggcggcacctcccctgtcagctcgcaaccct
agtaccccccgggcccTAAAGATTCTAAGCGTAGCGTCTCGTAAAAAATA
AACCTGGCAAAAAAGTATTCTCACTAATTTAACactaaatttcaagtttt
taagggacaaaaataagaaattttactttttctcaaACTGTTTTTATATC
CTCTTTGCTCAAACCATTGGTGAGACTCCCAGGttccaaaaaggcaccct
ttagggcggcacatacccgtgcacgtttctttataagaacatccaaaaat
ttagccttcggattttcttaactttttgagttttgagcctactcttaggt
gccaaataaacggggggggtggaaaattttcgaaattttaataaacgggg
aacctaattgccggggggggggttggaaattgtatcttatgaaaactcaa
aaataaggtaaatataggcaaaatcaggctttttggagcaaaataagggg
agttctttttgccaactgaaaatattcttgtaaaaaatgaataaacgggg
ggggggtcctaataaggtccggggggggagGAAAACTCGAATCGAAAAAT
CAACAAGCatggggggcgtttatttggcacctaagagtaatatgttctta
aaatgttcttatttttgcaattttttacattatttttgtccattttccaa
agaaaatcgGTGTTTGAGAgcccccaaagccttaaaatattcttaactat
AAAACAACGACTCGAATCTGTACTCTCCACTTGCTTAGGTACAGCCAGTC
TGGAAAAAAAGTAGGCTTGCCGgtattttcttaggaaatttgTACCTTCT
CTGGGAATTTATACTACCTACTAAAATAAACCttaatttaaagaaaaagt
gTACGTACTTAGAAAGAAggcactttttaaaaatttaatttgatctAGTG
AGATCTAGTGAGATCTAGTGAGATCTAACTTTTGCAGAATCtctaattaa
tttttaaaacccGGGGTGGGGGGAGTAGCTAAGCAAACggagggtatggg
tatgtgccacTATCAATTCAtggtgccgcccttaagggtccgTTTTTTGG
ATCTTCAAAATCCCACTAAAGGTCGTAAAAATCACATAATCTAATTCCAG
TCCCCCTAAAGATTGAAAAACAGCTCAAATTCCATATCGTGACCCTCAAA
AGTACCAACAAGAGTCATACAATTcacaaaaatttggaattttttacatt
taagtctctctaaggatccATTCACCAAAATTCGGGTGGTATATACCCGT
CATCCCGCAAACagacaatcatggtcgaaatatattgagatttttgtgta
ttttaacgtttttcagagtTTAAAGTTCGGACGAGAATTGTGATTTTAGT
ACTTCCACtttatttcattgaatttttcgattttggaggggtttgggggc
ttccaggctatattcccAGCCTTATTAAAACAATATTGAGCTTTtgaatc
ctgagatcctaagatcgtaagtcttaagtctgatgtttaaactcagagtt
aaaactctactttccaaccgtactttaatgcgctttaaaatcatttatgg
tgtttaaaatttcgtagggaaatcccctttgtctcaaatattttgtccat
gattgtagtccCCCATGGGTTTTAAAACTATGTTTAACTAGATACAGGCT
TAAAACACTAAATTAGTGGTTATTCCCTTTAACTTTCAAGAATAGTGAAT
TTTAGCAAACTCGCCAAAATTGCAAattcaaaatcgcgaaaaattcttgt
aTTAGAGTAGTCCAAATGCACAGGTAACTTtaaccatagaggtataaaga
aaacaggagttgaatgtgtcggtaattggtcgttaaagtcttttgatttc
ttttataaaatgtatcaaaagaaattctaagctcgcccNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNagaaaacattgatcgaaaaatcttatcatttgatg
aaggattgccaagtttacaggcctttttttagtccaaatattttcttaca
ctgatgtcagaaacaataagtctcgtctcatctaatttctaaagcttaaa
tgagccaataagatttcaccaatgGATAAAacagctcattaaaaatgcac
gatatatgagattatgagcatgcatacatcgtaacttttttaatcgtagg
gcgagcttggttacaatagcatacttctcctgtctttctttatacctcca
tgctttAACCAGCAAATATGATATTATATCAAATTTATGAAACACCGTAG
CTGCCTTATGTGATAAAATattcgattatgcgataaatTATTAGATAAAC
TCTTTCAatgcgataaattattcgataaatcattcgattatgcgataatT
CATTCGATAAACTctttcgatgcgataaattattcgataaatcattcgat
tatgcgataatTCATTCGATAAACTctttcgatgcgataaattattcgat
aaatcattcgatgcgataaaatatgcgataaaaatttcgattatgcgata
aaatattcgataaaaaattcgatgcgataaatcattcgataaattattcg
atgcgataaaataTTCGATGagataaattattcgataaaaaactcgatgc
gataaatcattcgatgcgataattcattcgataaaaaattcgatgcgata
aattattcgatgaaagattcgatgcgataaatcacTCGATAAAgaattcg
atgcgataaaccattcgataaattattcgatgaATTATCCGATCGGCCCT
TACCCGATAATTATACTTTTGGTGGAAACGGCGCTCCGGAAGGGTGAAAT
CATCGATCGAAAAGTAGATTTTCCGGGGTGCTGCTGATTAGGGCAGATTA
TGACACAAAAAAAagtgtgtccggaaaaaaataGAGCTAACAGATTTATT
GATCTATCTTACTGAGTTTAGAATTATCGCAAACAAATCCAATATTCTTT
TGAGCTTAgggagcggtcattaagtatagCACATACCTGGGTGGAAGATA
TTTTTTAGGGGGACTTTCAATTCTATACCCTGACAAAAATTCGCACAAAA
TTTTCTTACCCTGACAAAAAGAGAGGTAAAACTTTTATACCCTACCAACG
AGGTTTATGAGTGCATGAAATACCGACGCAAAAGTGGTGTCTACAAGAAC
AAATTGTTGTATCCAAAAAATTCCACATCATCTGTCTCGTTCCATGAAAA
GTGggttaatattttcaaatttccctTTATTAAAAATTGTGCAATTCCAT
GAAAGAGTTTAAATATATTCTATGGGAaatgtaaaacaaaaacaacaagg
tTTTTTAAACGATCTGAAAAATATCTGAAAGTGAAAACGTCTTTCCAACT
CGTCGTATTTCGACGAGATATCGGTTGTCAAAAGATGTCATACCCTTCCC
AAACTTACAATCTTTTTTCTATACCCTACCGATATAAAGAGGAAAATTTT
CATACCCTACCCAAATATATTCCACCCTACCAAGCTccatacttaatgac
cgctcccTTAATTATAGGGATGGGTGGAATAAGCAGCTCAGGGGGTTGGT
ACTCTGGGAGAAAATTCATAGTAAGTGATTTTagacaattaagcacaaaa
gagtaagGCTGAGTAAGGCAGTCATCAATTCTGAGGGCAATTATTAAACA
GATTTTAGTTTTATGTAAATTATGTTCCGTTTAGTTTAGTTCGAAGTCAA
ACTGCGATGTCCTCAAAGtttatgaaacttttttccatCCTCGAACCCAG
GGCTTATTtgacccccttacgctattgatgatccTGATAGACGCGTTGAT
GGGGGATATAAACGATCCCTTCAATTTTACAACACTTAAAAGTTGAACAC
CAACTGCCAGCAAAATGGTCGACGTTTTCATATCccccccccacacacac
acgTGGGGTTGCGTTTTGCGTTTTGAAACATGCGCCGTTTCCACCAAAAG
TATAAATATCGGGTAAGGGCTGATCGGATAATtcatcgaataatttatcg
aatggtttatcgcatcgaattctttatcgaatgatttatcgcatcgaatt
ttttaaagaataatttatcgcatcgaatattttatcgcatcgaatttttt
atcgaatattTTATCGCATAATGGAAATTTTTATCGCAtattttatcgca
tcgaatgatttatcgaataatttatcgcatcgaaagAGTCTATCGAATAT
TTTATCACATAAGGCAGCTACGGCGTTCCATACAAATTCGAGGTATAGCA
TCAGTATCACCAGAATCGCGAAGTATCTACGAATGCACCTTTTCAACCAT
AACCACCATTTgccgtgcgggcatttttttttGCCCGCTTTATCCGACTA
AAGCCGTCCCAGTTCTTTTTTCGCaccaatagacaatagaaaaatgcgtc
aaaaaaggattgggacggtttaagtgggataaagcggacaaaaaatgccc
tcacgactacggtcgaaaaggtgtattgcagTAGTACAATAATTTTCTCT
TTAGAGCgtaaaatcatcaaaagtagTTGTttaccctattcgtactagag
GCGGGGGGGGGGCTGTAAATCTAATGGTAATAGCTCTTGAAATAATAGAG
TTTTTAGGATGAAATTTTCTTAGCTTCAGAATGAGAAAAAAGTTGACACC
TGAAAATTTTCAcacttgagcatgatgacatttctgacagtaaggtatGG
CGCGTCAAAAAGGtttttaataccaacttttttttcaataccaacttttt
ttccatacaaacttttttttttcgatacaaacttttttttttcgatacac
caactctttttttttcaataccaACTGTTtttttaataccaacttttttt
taacaaCAACATTTTTATTACAACACCAAAGTTGTACAATACAAACTTTT
GCCTCGATGAGTAACCATTCAAGTGTAAAGGGACCCTTAATAAAATACAA
GAACGAGAGAGATGGCCCGGAAGCGCatgcgtggattaattttttatttc
aaaaaaagtatgtgagtaaaaaagaaaactccCTCAAAATCTTGTAGCTA
CAAACGATATTTGGAAGCGTATCaaccacagatttctgtaaagcccgaag
ggctagatggcttGCTTCAAGCTCTTCAATATCGggaaaatattgctgct
attgtttccgaaatcagcaaagattctgattggtcaagcgctgaaatttc
aaatttcagttaaggacatgtttttttttttactgtaccaaaatcaggtt
ttcgaaaatcgtgaaaatcacttttttttaattatttcgtcattcgcatg
atgaattttcctaaaattttgatatgtattgaaatttgggaagggcttta
aaatgagctatttgaaacttcaaaattcggagtatttcaggattaattaa
tcatggAGTGTTTTGGATCATATCTCACTCCATGACTCATTATTCGACAA
TCATCAcgacttttttaatcatttttcactcattttaacaattctcgttt
tctttagttcgttcctttctttcaactaaacaaaaatctaaaatcacttc
cccgatagatagacttgtcaggaaaatatatacgattagaattagcacct
agatttcaaaaatgatcaatttgatcccATTTTTCTCtggttttttccaa
aaaaaagagatcgatgtgaaaattcaaccttttagctacaccctgatata
agtttcgtatataaattggacacgacaaaagccaaatatagagccgactt
tataaatccgaaatagactatgatttttttcatcctgaaatactccggaT
TCAACAAGTGATATCTTAAGTTCCATAAAAGCTATTAAGATCGGACAAAA
AGTATCGGACAGAGCTActaatctattttcttatttttgaataacgataa
gaaacggttcagctgtctctgttagtgccgatttgaaccgggttggttga
aaatcggcattttggtacagtaaaaaaaaaacatgtccttaaaTCTAACT
TCGACGAATGATGATGtagtaaagcccgaagggctagatgtcaagCTTGT
GTTATAAGCCTCTGTCTACATTGCAAAATAATGAAATCGAGTAATCGAGA
CAAAAAAtagttgatataaaaaaaattggtatcaaaaaaaaaagttggta
tcgaaaaaattaaaaagttgatattgaaaaaaaagttggtattaaaaacc
cttttggcgcgccatagtaaggtgtcacaaaaattgacacaatTCCAAGG
TAATTtctaatgtcaaatatatcgttttaaaatgtaatttaggttaaaat
aagcattttaggaTTTTAGGCTCAGggaattttgaagcctttgctagaat
acaatagctatctaaaataacaaaggaaattttcggttttgctCATATTG
ggcgtcatcaaaaaaaaaactttgtcaaaagttaccttgtGTAATAAAag
tcttgtgtgccaaattccatccaaaaagacccattagatcaaaagttaag
ttgaaatttccgaaataccgaataattttgccaaaatttacaaaattcca
taaaaaaatacttgcaattccgataccaatttttttgggtatttttcatc
gttttgactaatttttttatcaattatgatttttcatgtatgaattccga
aaaaggggataaaaactttataatactgaaatttcgaagcaaaaattcat
ggatttccgataccaaaacaatttcagaattccaaaATACCGAAAGAATT
TTGCCTGAATTCTGAAaatccgaagaaaaaagggtcgatttccgcaattc
caaAAAACCGTACGCCCTCCacgttaaggggtggtacaggaacagcctcc
ccctagttttgaaccgccctTAAAAGCCCATTATGAATAGGGTTAACGGG
ATACGTACTAATTCCGACCGAGATATATTGAATAATTTGGAGCAATTAGA
TAAGTAACTCAAACAATTGATCattacaaatttttttatagCTTACGAGC
AGAAATCAATTTCAACAGATACATTGGACAGCTTGAGGGCGTTTCATGAA
GCTGACAAAAAATGGTGTGAAAAAAGCCAAGTTTTAATCGACGAATTGAA
TAAGGCGCCTGAATTTTTTCCTGGTATTCCATTGATATTACGTGGGAGCT
GCAAAGATGGAACTGCTTTAGCGCGTTGGTTCAAAAACAAAGGTGATCAA
CTATTGGAGTGGGATGTCATGTATGAAATTGGTGAGATTTATGGCCATTG
TCGTGGTTATGTTGAAAGTGTCCCTGACTGCAAGGAGTTTGTTTATCTAA
AAGACTTTTCTTGGAAGGGAAATGGTGGCTGTATCTTAAAACCAAGAGAC
CCTTTCAAAAATACCCTCAATGGCAAAGACAGCAACGGGAGATATAGGTT
ACCATTAGGTTTTCTTTCTTGCTCTGATGTAAAGAAGGATTTCAAGAATG
AGCTTCAAAAATGCTTCAATAAGTATTCCAATGTTCTACGTCAGAAATTT
ATAGATAATTTCAAAGGCGACGAATCGGTGAGCgtgggcaatttaaaaca
agaTGGAGTGTCAATCACCTTTGATGTTAGTAGTACTTATAAAGATGATG
ATGGGAAAAAGCATGATTGTGTCTTTTCTTGTGATAATATCGCATCTGTG
TTCTGTAGTACTTACTGGCCAGAAGTTTGCAAGCACTGGAATGACAAAGT
TGCAACGCATCGACTGAAAAACGGAAACGGTATTGCTACAaatgatgaag
aaaaagaaatccaaaaaggAGGTTGCCATATCATACCTAAAGCAAACTCA
TTTCATAAATATGCTGATCTTATGTGGCGTTGGTCAATGTCGAACGCTGA
GGCATCAATCATTTCACTTTTCTCAGAGCAACAAAAGTTGGCCTTCCTTA
TGGTGAAAAGCTATTATTACAAATTCTTATCAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069079TCONS_00069079Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069079-proteinTCONS_00069079-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:200973..210007 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.07	0	0.08	0.15	0.08	0.25	0.39	0.28	1.2	0.15	0.17	3.45	2.64	9.86	12.78	2.3	2.75	5.89	5.36	0.18	0.16	0.9	0.76	0.87	0.97	8.19	10.25	0.9	0.76