XLOC_043359 (gene) - C. hemisphaerica

Overview
NameXLOC_043359
Unique NameXLOC_043359
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_503:193413..202036+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043359 ID=XLOC_043359|Name=XLOC_043359|organism=Clytia hemisphaerica|type=gene|length=8624bp|location=Sequence derived from alignment at scaffold_503:193413..202036+ (Clytia hemisphaerica)
TTAGAAGTCGAGTACATCATGATGTTGCAATTATTCATCGCTATTTATTT
GGCATCAGGATGTTTTGCAGACATTCTAGGTAGGCTGTTTATAATAAAAA
CGCCTTCAAAGGAATCAGTTTAAATGTTTTCAACTCACGGGGCAAGGAGA
AAAATCAAGGAACCAAATGATATGGAAGattgttaaccctttaagtgcca
cggtcattttcttctaagttttttaaagaaaatcgctagttcaaacttta
aaggcttatatctcgagatctagaaggagttagaagcttgttcatagctc
gttggatagttTAGAGTCTTCTCTTTCTTTAAGGCCGCTGCGCAGACCTG
TCTAAATGATAGAAAGATGCCcaatggtaaaacttcaaattaattcgctg
gaggacagaatcaagtaaagcaaggccaaattttgaggttcttggatcac
tcgttgaccaaaaatggtcaaaaaacggtcaaaatcttaaaagagtagat
ttttgtcaaatttttgcatttttctttgcatttttggcttaaaatttcgT
TAGAAAGACTCctttagatttttctttttgcttgaccatggaGCCcgatc
caattcctacgagttagaccaaaaatgacgatttctaacttaaactgggc
attacaggagggcttcgccctcctacatagccaatgtctgatatatacga
cattggcattTACAGGGTTAATTTGAAGGAAATGTCAAATTTGATTTCAG
AAATTTATATggttgaaataatttttcatgttatgaaatttttgaataat
tcaTGTGAATAAAGTCATTGGTAGGGGATCTTAACTTGGCCTGTGCGGCT
GCTGGTACTTAGAAATATGTTAGATTAGCTCTAAATAAGCAAATTCAACT
CATATCTCCTTAAAGGAATTTTTTCAATATGAAAGATATTAAagttggtt
tgaaaaaaaaaattgactagaAATTTACCAAATAGTGACTCTTTTTGAAT
TAgttttctctcctttaaagttgaaatgatctcaaatatttttcagactG
TGGTAATGGTTCCAAACTAAGCCGTATTGGATGTTTCACAAAGAATGATA
ATGCCCCTACCAAGTTCATAATGAGAAAGCCAGTCTATGGTGATGGATCA
ATAAAGAAGTATTTCCTTTTTCTTCAAATAGTCATAGCTTAAAAGATCAG
GGTGAAATGAAACCTTCCGGCGAGTTAAGGGATTCTTTACAGCCAATTTT
CACAATTCTGCCCTTTAGCTCCAATCATTGCCAGGCTTAGCTTTGTCctt
aaattttcttcttttttgcaTTCATGTATGAGCCTTTTAAAGTCCTGCGA
TTATTTTAAATTGCAGTTTGGCTTGTGGCTGTGCAGCAAAAGCAAAAGAA
GGAGCACTAGTTCTATCGAACTACGAGGAATGTTCTGAAATTAAGGCTGC
GGATCACGGGAGTCATTATCCTGGTCAAAGTTCATACGAGAAATGTTTCA
ACTCAGTCTTTCAAAATtgtgaaaagggtcaaaattgtATTGGTACCATT
TGTTCCGTTTACATTTATGCAAAAGTAGGTATGTATCAAGTTGCATTTAG
CCTGAGATCAGGTCGTGATTTGTTTTGCTCTAAACGAGGGTGAAAACAAA
CGATctgaaaaatattcaaactCGATTTACTTTTAAACCTATATGCTATA
AGATTTTACTATTTCAAAGCGAAAACAAGCTCTCTGATTAAACTCCCAAA
AAGTTCTTGTAGCGAATTTAATTCGCCTTAACATTATAGAAAATCAAAGG
CTTTATATTACTGAAAAGACACAACTAGTAATAAGAGATTTGAACCATAT
ATCGCTCTGTTTTGTTTTCACTCAGTTATACCAGGTTAAACATTTTGACA
CTATGCCATGGCAAGGGATACTCAGTAGTATACAGAACATTCCCTACAAT
TTTACATTTATTGAAATTAAGAAtgatttgaaagaatttgataaacagTT
AAGTCAAAATTGGCCCAACCGTTCCCTTAAGTTCAGTGTGTGGCGACTAT
ATTGTCTTTATCAAATTAAACTATTCTTAAGAttcttaaaatcaatttta
gttGATGGAAAATGGAGTACATGGTCTGCTGTCGGAGGATGTAATAAAAA
ATGTGGTCCAGGGCGCCGACGATTCACAAGAAATTGTAATAACCCAAAGC
CTGCTTTTGGTGGAAAATCATGCATAGGACCGAAAATCAAATTCGAGTCC
TGCAACAATGGAGCGTGTATTCCAGGTATTCTTTTATAATCACGGTGTAA
ACCACTTTTGATTGAGTGTATTTTATTGTAGGAGATGTATATATATgacc
ctgtctcacagctccaATGAAACTTCTTCCCGTAGTGGGGATGAGAAGTT
CTATCAAaatccaaatgaattcaatgagGATAGTAATTCTATTTGCTCTA
AGGTGAAaagatccagtggggatggttttNAGATagtaattctattgttc
ccaggacaaaaaatccagtgtggatggttttggagtgcgaTTTTTTACat
cgaatttcaaatggggatgaaaacaaagtcCATTTCTCAGTGGGGTTGAA
ATCtttggggtatttttcccacgggggacgaaatttcggccaaatcTTCC
AGTGTGTTGGGGGTCCCACCaagtctgtgacacaggggtgtatattGCTT
ATATTGTATTTAAAATACTTCGCATCAAACCTAAACATTGGCCAAACACG
GCGGCAAAAAATGAGTTATTTTCTCCCACTGGCCTCAAATTAGCTTATTA
GTGACTGTTAGGTTGTCAAACCTATAGATATTCTTAAAGGATATGATTTT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTTGCTGAGCGAGTGGGAGAAAAAAGGCCATTTTTTGTCGC
CGTGAAAACTATCTTTTTGCTTTTGTTGGTTCTCGCAGTGGCCTTGTTCG
CCAGAAGaatattcatgttcatgttcatgatgttgtttctttcgattctg
agcgggccgccgCAGTTGAAGAATGCTCGCGTGCACCTATGTAtcgtttt
atctattttgttgcGACTTGTATTAATTCTCACgttttagttcttacaaa
gtaaacaatggatggcgcataacatgagcatttttatttttcttataagc
atctactttataagcataaaatcaataattcttgatagacggtgatatac
ccttcggtaattagttcttacaaagtaaacgcCCGGGAGTAAACGGCgca
taatatgagcatatttatttttcctatgatttttcttataatcacctact
ttaaaagaatcaaatcaataactcttgataaacagcCATACATTTTTCGG
TAATTAGcacttacaaagtaaacaagggacagtgcacaatatgagcatgt
ttattgttcttataagcatctagtATATAAGTTTcagatcaataactctt
gatcaACAGCTTTATACCTTTTGgtatagttcttataaagtaaacaaggg
acagtgcacaatgagagcatttttatttgtcttataagcacctactttat
aagaatcaaatcaataacttttgataaacaGCCATATATCTTTCGGTACA
GCGAATAGAAATTTCCAGCTGTGCGCTTATTGGATGGCGCTCCAATAAAA
CGATCTGGTGGAATGTGGCCTTCAAACGTTCATTCTCGATTATGAATGCG
TtcgcggggcattcatagcgacagctacttgctagtaaaTATCAATGAAA
TAAGTAGTAGTTATCCTATATTGTACGAGTAAAAGTgcgataactggttt
atcgtcaacttgaaCAATTGCCCTCGGTGGCTGCTTtcgaaaaatattaa
caaacttTTCTCTCTCCATTATATTTGTGTTCTCTctcttctttgttttg
ttttttcacaaatcaacatcaaaacattaaaatctTCGAAAATGATTCGA
ATGCTCATTAAGATAttaaaatacacgctttttttttataagaatacact
ttataagaatgtccatgatgaaaatggccaaaaaattaagaatatggtaa
gaatatcaccaNATTAAGatattaaaatataaataatttttgTGAGTATT
GagaggaaaaaagaaaacattcctGCGAATAACTTTCGGGATAAGataca
aaaataaattcaaatatgatctctcgcttaccagacccctttttgAACGC
GGTCTTGTATGTGTACGGTATAATATAGAATACAACATTTATGTATGCGT
TTTTATATCTCAAGCAGACGACGACATTGAGAAAAGTCACCAAAATCTGA
TTAAaagtaaagtctgtctcaatatagtttgtagactgggaatccagtcg
tttataacgattttgttgaaagcgggaaatttttatgtcgggatatggtt
aaaataaacgactgggctaaggtggtttccgtaGCTTACGGGAGTTCCAG
CAGGGCCCGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAACAAGACctcctgaaaatgttatccaaaaacatgaaaaaatataatt
tttatgaaaagtttgttgtgcacaaaatattctagacgactatattgatg
ctcctgtcaagttttctacttcctattttttactgagttaagtcgNNTtt
gcagtggagacaaaaaaagctgtaacttttgatagaattcgaattagaaa
aCAGTTTTGTGCTCGTTTGAAAGATAATCCAGAGTGGAATATTTGCaaga
aataaaaatctttaaaaatggaaaaaagaagatgaaagaagaagaagaat
aaaatcaacttcttaTAGATTAATGCtgtgatcttcatttttatatcaga
ggttctttaatcttagaacgtcataaatgggaaagaaatcaaagaatatt
tgtttagtcaaaaaatacaacttaaaattttgctttggtCGACTtaaaaa
agggcactttttttttgtttttaggtgGTTTTCGAAAAGTTAAGATCAAT
CTATCTTTGATCTAATCTAGCTCGGAAAGCTTGTAATAAGTTAAACAAGA
TAGGGCACTCTAATTTGTTTAACGTTCtcaaacttcaaacttttaGAAGT
CTTGTCGAGCCCATTCTTCTTTATGGCTCAGAGACTTGGACTATGACAAA
AACCATGCTGAAGAGCCTAATGGCGTTATACAAACCTTTTGAAAAGAATA
CAGATTCTTGATTGGCGCAACCACCCAACCCTTCACGAGATCTATCATGG
ACTCCCAAAAATTCCTTCTGTCTTGACAAGCAGCATGCTCTCTTTCACAG
GTCAATGTTTCCGTGCACAAAATGAAATTGTATCTGAAATCCTACTTCGG
TGTCCTGCTGGCCCTAGGCGCTCGAAAAAGCACACActtcttgatatttt
gaaacgaaaaaCAGGAATAGAGATTGAGGAACTGAGTACTGCAATGGCTG
ATCGCAAACTGTGGATTGATGGTTATTCTTTGTTTCCTAGGTGATGATAA
TGAGGatgcgtttttagccaatcagattgctcatatttctCATGTTGACG
ATAAAGGATGGAAAATTCCAAACGTTGTatatttttctttgtcttttgat
gtttttttaacattatacCCCTGTCTTTGTGCCTTACCAAGAACCCagat
tgttttcaaaataaaaataatataccacctttctttctttttagattTAA
GAAACCAAGGACAAAATTGTTGGAAAAAACCTACCTATTTCTGTGGTAAA
AAAGGTCTTTGCAGTCGAAAAGGATGGGGTCGATGGCAAGACGCTGCATT
CCCCTGCGTTAATAGGCACTGTTGTACTGAGCCAGCTCTTGTTAAGAACC
TAGGTAAGATTAATTTTTCATTGACCTTAAAACTATTAGGAGTTTTAAGA
ATTTTGCAGAAATTTAGACATTCCCTTCATTTAAACTCAGGGAATATAAT
AGGTTGGAACAAAGTAATTTTATAAAACGTTGAAGTTACCCGCAACAAAA
ACAATATGCTATCCAAAAGAGGGTTCCGTTAACTTGCATGAGAAATGAGG
CGCCAAAATTCTGCATCTTTATACTACAGTTCTGTATTTTCAtaacaaaa
ttatatttaagGCTCAAATTGCTGGTCGAAGTGTGGTAGAAAGGGTGGTT
ACTGCCCTGGATTTTGTGGCGTGAACGGGCGTTGTTGTCGAAGAGGATGG
AATGATGCTGGGTGCGCAGGAATGGCCACACCGTGCAATGGGAAGCATTG
TTGTACAACTAAAAGACGAGATGTCCAAAATAGCGGTTGGTTCATAGTGT
ATTTACACCAATctttgtacagggtgtcccgaaaaaaagttaCGTGTTCG
Aatatgattctgagtagaaggtttttgcgtgtgtttaacaaaatgtaaga
aaatgtaTACCAccacaataattgtttttacaacagtcgttatgataaaa
aagaaagttaTTTAGAATTGTTTTTCGTAAAAgctattcataaaagatgt
ctcatgacaattaatatgaggggggttgtactttttcggtgtgacgggat
tggcccttatttagtacggtattacgggatttgacgaaaaaagagacggg
aaaacggtattttaaaatcagacggtgacggtatttaggtacatttttgc
cctgtacaagccggtgtgacggtgttgttatttttccaattttcgggatt
acgggattcagcaaaatttttgacgggaaaacagtatttcgaacccctac
aaacccccccccatATGACATAGAgaaaaactttgataaaaatagcaaat
tcagtgaaacacacacaagaactttctttctatagaagtggtacgccttg
attttttcgggacaccctgtaaaagattttggctttttatcTTTGAAACT
GTCGGTGTAGATTTAGCATAATACAGTTGGCATTCCCAAACTTGAATTTC
AAGgggcattttattttcataaagtaAGGGAGCCTAATGAATAGTAGAGT
ATCGTTTTTAAGAGTTTCTTGTCGGCGGTGACTTTAAATTATGGAATTGT
AGAACATCgaaattagagagtgtcaaatGTATTCCTGAAAAGGTGGTTCT
AAAAAAGCTCTAATATCTTAAAGAATATTTAGAACCAGAAATTTGAATTC
ATTTTCCCATTCCAACCAAACCAATGTTGATTCAACGTTCATGTAACGTT
TTATATTTTACTCTGTTTTCTCATACAGGTAAAAACTGCTGGTGGAAATG
TAACAAGAAAGATGGAGAATGCTCAACAGGTTTTTGCGGTAAAGACGGAG
TTTGTTGTCGACGTGGTTGGGATACTTACAGATGTATCCGGACTACTGGT
GCATGCAGATACAAACATTGCTGTGTCGGTACAGCGGCTATGGGAATCCA
AAAACCTTGAGCCGTCTTTGATCGAGTCTCTGAAATTGGATTACAAATGG
TTACCTAAGGGAAATGATCATTGAAAACTTATCATTTCTAAATGATAATA
AAcatcatttttagattttgtagCAATATATAAACAGTATATGAAAGTAG
ATTTTTGTAGTTCATGTACGTGCATTATCGTTTAAGAACTAATAATATAA
AGCTTGAAATaatatttatttcta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069631TCONS_00069631Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069631-proteinTCONS_00069631-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_503supercontigscaffold_503:193413..202036 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27	0.19	0.18	0.13	0	0.05	19.18	21.28	113.47	52.54	116.03	103.92	7.48	3.45	41.18	41.4	0.44	0.45	1.16	0.51	2.72	3.87	0.27	0.04	0.18	0.19	1.06	0.47	0	0.1