XLOC_043394 (gene) - C. hemisphaerica

Overview
NameXLOC_043394
Unique NameXLOC_043394
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_506:223160..233350+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043394 ID=XLOC_043394|Name=XLOC_043394|organism=Clytia hemisphaerica|type=gene|length=10191bp|location=Sequence derived from alignment at scaffold_506:223160..233350+ (Clytia hemisphaerica)
TAGGAAATGTCAGCCAAAGTACAACACAGATTGAGTTTACGATATCCCCT
TATGAGCGGATTTCAGGTATGCACTTGTTCTGGGTCACATAGTCAAGCTT
GAATGCTTTGCAAGCGATCAGTATTCGATTTCAGCTCAAAACATTTCATG
CTTTGTAAGTGAACGTAAGTATTCGCTGAAACCTTCATACCacgaattca
tgatatgcaccattgcaatgtcttccagcACGGATTcagcagctgattgg
ttgtaacgTGTGACGTATTggctgattttacgtcacttacaaccaatcag
ctattgggtccgtgatgtaatgtccgaagacattgcaatggtgcatatct
tGAATAGTCAATTAACAACGTCTACAATGTTGCTTGCTAGAATGACACTG
CAGGTTTTTCGCCGCTCAAACCTACGAAATGGGTTTGACTGGGGTTACTT
TTGTAACAGATACGCAAAACAGcctctttttttacttttttacctCGTAA
AATTCTTTTCGTGCTATAACTAGTCGcgattattttttcgttttgaAAAT
CAACATGTACCTTTCAAGTTTGAGGTCAGTTTAAGaggatttatattttt
caatatttaaaaatgaaaaactttgattgaaaaaatataaagaaaaaaac
aaagaagttaAACATCCCTTAAATCCTGTGGGATAAAAATCTGTTTTGAC
CACAGATAGATATAtaactagccgtcacccggcgtcgcacccgccgagga
gtagataagctgaacgcatcataagccctttggataGTAAGTAAAGGGAA
TATTATGGACTGATTTATTCccaaagaacgaaaaattgcCACTTGAGACC
GATCAAAACTCGAAAAATCGCAAATGtcatgttttgtgacgtcatttggg
ccctaagtgacgtcatcgaaagggtaataaacttttcacctcactgaaag
tatttcttccctttttcaaagattctcttgatgatttccaATCCAATGAG
GGATCaatcattgcttaaatcctGCTCAAACTCCAGATATTGGATTTTCA
GGTttggatgacgtcatcggaaccAAAATGCCTCAGTTTGAATACATTTA
TTTCAGAAAATCTCTATATACCCAGGatatacccactcttaccccTGCCA
AATTGTTCTCTATTAAattcccgatccaatgaggggtcaaccatctcgTA
ACTCCTTttcaatctcgagatatcgtcTTGTTAAGTTTCTTAGCTATCTT
CCGTAAAAGCCCGGGCTATAAAATATACGGTCTATCACGTTGCTATGTGA
Acggatttaaaagaaaaatggcggattcccaatgtaaacaaaaacacaag
gaaccaaaatgtgtcacagattagaaaaagttttttttcctatttCCCTT
CCCGATtaaccattttactttttatatagaCATATAATGATTAACAACTG
AATACTTTAAAAGCAAGAAGCTAAGCTCTAAGGCCAAAACCATTTACTAC
ACAGACAACATGAATTTATTGAGGACAAAAAACTGGTACcgtataaaatg
aaaatatcagccGCTCAATACTATAAAGGAACCCAAAGAAATGGAAGATA
GGataatgtcaatatttttataatgagGTTTAGTGTTAATTAAAGAGGTG
CTAGTGATaaatttaatgtatataaatctgaatgaaattagaatgattca
ttttatcaTATGATGGTgtcaattagcctccgtctcggaagaggactggg
cccgaatttgcggacgttttcacagtttcactttcgttttcggctatacg
acagcgttttcaagcagaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNat
ttcatcagaaaaaacatttacaccaaagctccttattgatatgtgaaggc
taccaaaaatagcaatgtcctccatcagaacaactttaacataagggaca
atgACAGTCcagaagtctactttgttgaaaatttgcacaaaatacttaga
gaaaatggtactatggaagccaattctatactcctaaatgatagttgaaa
gatcagcagttgagaaggttgattaaaatagaaatcaaagcacacaataa
agtatacatatatatttgtccagaaagaactggcatgttgtttgctttgt
tttggtgtttaaaaatatgtacttatcagtcctaaaaaaatacaaattcg
attataatgagggcaatgagtctggttaaatgttactatatttacaagaa
aggattactgaaaaaatactactgtatatatgtactactgatgaactaaa
ctcaaaaactaaaactttaccataaatttacattacgacaatttaaaaat
ctatctttaatagcaacaaagaaaaaaacatggctcaaagttttaaaaac
agagctagtcagagcttcaatacAGTAGCTATAGagcagacactgcattg
gttactacaagacatactatccacacggttttttcgattcatgaaaaaaa
atagagtatttatcaaaaaaaggttctctttttttttggtaatcaattcc
aacaaacaacaatccaCAATCAATAtgacagttttttgaaaaccatccca
cagtgtaaagattatcaaccaactaaacccacaccgccaaaattgtaaaa
ataagtcaatataatttctatcaacaatttctcgtaaaatgtttttttcc
aacattctgataccaatcatggctggagccatcatgtgtagagtgactgt
gtggcatttcattgcttttaatgatcacaataccaaacatcaacaaacaa
aactgacgccaagccaaatctgtcgattaaaaatttccatgaaaattata
attgaaacttatctcgtaaaatgcttttttcaacattctggaggtgNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtcacatcg
tgtttatatggggtatcagaaagccaatccacaagaagagccatcttcct
ttattatggagtgttccaaaactattggtaggttatTTGGCAGTAAAGAA
ACCcatacagtttgttttattttgaagatttaacttgaaaacaaactgca
tctttccaggagaaactcatgtttcaacctgctacataacattggtcagt
cgggtctgctaataacatgtaatagttttattatagccgagcttgagaat
ccctaggcagaacttgtaacatgtattatgtgtataattatgtcagtcga
cttgaatcgtgatacattactcacatttcactggatgtattttcgctgtg
aaattatccgcaaaattttctgaccgcgttctgagacggaggctaataac
TATAACCTTTTCCTATTTAcaacataataaaaattatggaaaataaagtg
ttcttataaaataaagagtcggtcggtctaagagtgagtcggtcggtcgg
tctataaagtgagtcggtcggttggtctaaaaaagtgagtcggtcgatcA
GTCTAAAAAGTGAGACAGTCgctcggtctaaaaagtgaggcgGTCAATTG
GGCTacaaaagtgagtcggtcggtcggtctaaaaaagtgagtcggttggt
cggtctaaaaaagtgagtcggttggtcggtctaaaagtgagtcggtcggt
cggtctaaaaagtgagtggGTCAGTCGGTCTAAAACGtgagtgagtcggt
cggtcggtctaaaacgtgagtcggtcggtcggtctaaaaattgagtcggt
cAGTCGgcctaaaaagtgagtcggtcgctcggtctaaaaagtgagtcggt
cgctcggtctaaaaagtgagacGCTCGCTCGGTCTAcaaaagtgaggcgg
tcggttgCTCTACAAAGTGATGCGGTCGGTCTGtatacaaagtgaggcgg
tcggtcggtctacaaagtgagtcGGCCGGTCGGTCGTGGAAACGaacata
tttgtgattgccgccctACAAAGACTACCAAATTACTTGGATGTATTACC
ATGCAGCAAAAATATGCCACTCTCAATTTTCAAGAGGGCTAAAGTAAATG
TTTCCATTGGTCGGTCTttggtctttgtttattttgttaagaTGGTTGGT
TGCGATAAGCCCCATAATAATTTCTGAAGAGAACAACTGTACAAATCCAT
AACAAAATGTTCTCTATTTATAAGAAACAGGATACCATAACCATTAAACC
ATTCCCTATCCATGTAAACGATGACACCAGTGACCAGAGCAGAGAGACca
gatcaatcaatcaatattaagaaaccaaagaaagaaaaagcaaaatagcT
GTTGAGATTCTGGCTATTCaatgttttatttacttttacgaaaattacca
gtaaagtagaatttcgaaaacggagatacgcttccgaaccgcgcgacgtt
tcccgatcggcaaggaaccgTAGGCATGTTTTCCCGTGACGGTGTCAAAA
GAAACGTACTCCGTCTCAAAAAAAGAACACTGtactgttttcccgctcgg
agctcgatttaaaaataaacttggaaaaaaatccataatggccccccGCN
NNNNNNNNNNNNNcccgctcggagctcgatttaaaaataaacttggaaaa
aaatccataatggctcccccacggctcatagaaaattagacttttagtat
atagactaaaaaaaatgaaaattcaaactttAGTTCCCTCCTCTGGGATG
AAAAGggacaaaatttaaatttttctaaaaccaCACAAAACCTTAATAAC
TAACATTCTGGTCAAAATCTCGGAAATCCGATAACGGTTTCAAAGGGTAG
ATACACATAATAAAAGCCATATATAACCatggaaaaaaataagacattga
cacataacatttttaaaacacGAAGACTTCTAAAATGGTACGTATATGTT
TATGATTTTATACGCACTTTTTGAAGTGGAACACCACATGGCCCAATCCG
GCAAAATTTTTAGTTATCAAACGCTTGGTTAGGATATGGAACAATGGGAA
AAAGAATAAACCTTCATGTTTGTTTAGGGGTTAAACCTGTGAGGAAGAGT
AGCTGCAAATTGATCTTTTCGTCAACAGCGTGCGTTACATTTTTCGAGGA
CGGCATTTTGTCGGCTTGGAAAGTAATctatctttttttcttctttcagg
aACGAGTCACAGAGGAGCAGATAGAGGGTAAGACACATGGTTGATAGTCA
GGGTACTAAAAATCGAcatgtatcctggggtgggtggtgccaaattatta
cttttcatatAGTATCGGCCTGTGTACTATAATTAGGGTGTAGGGTTCAA
AATGATTCTTTGGTTTTTGGTACTTTTATGGGGTCCAAAATGGACACTTA
CACTAGTACACATACTTACTTACTCTCGTACCCTgaaacctccccccccc
cccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNccccccccccccccggggtagcCAATCGGAA
AAAGCTATTTtcagtggattaattttcgcaaaaCAGATACTTCCAAAAGA
CgattttaatcaaaattaatttaatcTAATTTTCTCGGGAGTTATCTACG
CGAATCAGTTCCTTTTTTCAActgttttctttcattttcctaggggtatT
GACAGAGCTCTTGGTTTTTCGcaagaattaaatttcgcgaattttcgaaa
aaaactcgCCAAAGACTCCCCCGGTAAATAAATCCATTTAAGCTGCAAAA
AtgtaaatatatatatttttttacagaGTTTCGTGACGCGTTTATGGCTT
TCGATAAAGATGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAATT
CTAAGATCACTTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTGT
CAATGAAGTAGATTTTGATGGTACGGATATGGTTCAatattccttaaaaa
tctgaatagaatattttttctaattaaaattttccaaaaatgaaagaaaa
aatacccccagatattcacccaaggattAATTGTGCCCATTTTCGAAGTC
TCTAGACTGCCCTTAAGTATTTGAGACACACCAAAAGAcgattctcagat
tctagctcaaacgaagtttaaaaaatttagtcTGCTTTGTCAAGTTAAAA
AGCCACTTTAACAAGCTGTAAAATTTCATTCGGCAAATTTTATAATGATA
ACACCCCCTTTATCTTCTATTTAGGCAACGGAAAAATCGATTTTGTGGAG
TTTGTAAATATGATGCTATTGAACGGTGATCAGCTTGTGTGGAATGACAA
AGACTTGTTGGAGGCTTTTCACGTCTTCGATTCAGACAATAAAGGTTAGT
CAGTCAGACCCAGTCAACTGAGGCTCTGggaaatatattctttaaaaaaa
aaaagaagtattgtttgtgattgatgttgcagagtgctcaatgaaaacca
gagccaagtaaaatattaaaatatatctttcatcacaaaaaattaaaaga
gtaCACTACTCCGATTTCGTGCTACTGCACTTTTCAAATgtacaaaataa
aattattttacttgATTGAAGACTGTAAAAAATACTtggggctagcttgc
tagggggATAAGTGTTGAATAATAGAACCggggcagagctgataggttAC
AAATATTTTAAGTTAAGTTAAAAGTCTATGCTGTGAGGAAGGTTTTGACC
CCTCTTATAAGGTTTTCCTTACCACCCCCCTGAAAAATACTGGGAGTCGG
ACCTCTCTGCATTCCATGTTTCGCCCATATAACATGATGAAGATGATATC
GAACACTGGAAGGCTGTCAGgattgataaccactacactactgagCCGAT
ATTTAATAATAAGTAAGCTTTTATACATACATAAACGTAAACATTttggt
tttgataaaaatatgatTCAGACCCAGTTAAAGAATAAGAAGAATGGTGT
AAATatcatgaaagaaaaaaacagatCTTTGGTAACCATTCTTTCCAATG
ACCAGACATAcatttgtctgtacacagacccagtatctacagcTAATTCC
AAAATTCATCGCCGTAGAGATGTCATTCATtgtcttttttgatttgagaT
TCTTCAAATCGACTGCTGCGATGAAGTGTTGgagagagaggggagacgat
aaGAGTTGTGTTGCTATTAAAAAATcgtacttcatcgcagaggtctccgt
acgggaatttttttattaaacagacaatgcgcacagagtgtacttaCAAA
GCGATagacgtgagatacactctggtacagagtagacATACATAGGTAAA
GATTTCCATATCAGCATAGGAGGGCAAAAAGCTCTCCCCATAATAAAATa
cattaaccctattagccccaagcttttttgactttggtatccccaggggg
gggtagaatctaccaccctcgattttttttgatctagaagagctatggtc
atgaaatttggtacagatgttctccatcatgaaacaaatttccaggaaga
aaaaaaaattgatgacgtcattcaaaaaccgatgacgtcatcacaaaatt
tccacttGTCGGAAAAAAGCTCGAATATATGGTTTACTAAACTGTCcatt
acaatcgaaccaataaagatatttagattatgtttaaagattcagaaaga
taaaaggttgttctttaacataattgccggttttgaaatttctgcgaaga
gtttttcttaaaatctatgctgaagatgagtaaaattttcaaaatttgat
gacgtcataaatgatgacgtcatcattttcaattttcttttttcaatttt
tcaaatttatattgtcaatgtctatcacgtgtcaaaatttgaaaatgatt
gaataaatagttcaaaagttatcagcactttaaaattttgagttttaagc
ggttttagctggattttatgtcatgtttcacaataaagccataaaacctg
atctgagcaacctatgaccctaaaattttgcacaagtactcttaataaga
ttttgttaaaagtcagaaagtttcaagttgtttaaaaaatttttctcaaa
gatattcacaaaagaactccagcgtggtagattctacccccccctggggc
taatagggttaaactgTATTTTTGATTATAAGTTGAATAACTAGATTCAA
ATAATAAGAGTTTCGAAGTGAAGAAAATTCCCTTTGGGCTTTGATTCAAA
TGACTAATACCTGATGTAATACCTCTGAAAATGACAATTCTATTTCCTAT
ATGTATGAAACAGGTTATATAATGGCAGCAGAGCTGAAATACGTGTTGTC
ACAGATGGACGACGAGAAAATTCGAATTGAGGAACTTCAAGACATGATGC
AAGCATCTCAGATCGATCAAAAccgaaaaatcaatttcaacgGTAAGATT
TCTATACAGTAAACTCATTTTACAAGTTCTttataataagaacaaactat
atacttagctttaaaaagttaagaacatccgaactCTTGAATTTTGGACG
ATGCATTTAGAGTTGCATGAGACAGGGATTTTTTTCTGAACCGATTATGT
TGACAAAACAGACTCGTTCAAATAAGTTACCTAAGGCAGATAGCGTGGAT
AGCCGGATTTTTATTTATACcaataattttcaagaaaattttcaCTTTGA
TTTTAGTTGATTTTGCAAGTCAGGGATACTAACTGGCGAGGAAACTCTCA
TGATATGGCAAAACAGACAACACCGACTTTTATTCCTGCTTTTATTAATC
TCTTATCTTTCTTATTATATACAGAGTTCAAAAACCTAGCAAAACCTGAC
CTGAAGATCCATTCACATGCGTTggcacaacaacaacaacataaccaaaa
caaacaaagtcTAAGAGCGCTTCGATTCTTGACTTAGATACTTTGAGTAT
GGTGTACATATTATGGGAAAAATTATAATACTGCATCATCCAAATTAATC
AAAACCGATAATTTAGTCCATTATATTTTCTTTGTATGAATTTGTAAGAT
ATTTCAAAGCAGTAACAATTGAAGATTgacctttaaaaatacacgattca
ACACAGTCGCCTAATAATGTTTGCTGTAAAAATGATCAAAc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00069689TCONS_00069689Clytia hemisphaericatranscript
TCONS_00069690TCONS_00069690Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00069689-proteinTCONS_00069689-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:223160..233350 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.18	0.2	0.53	0.97	0.09	0	0	0.08	0	0.21	0	0	0.16	0	0.08	0.11	5.65	8.42	0	0.22	33.04	28.23	6.71	10.44	7.86	7.08	0.18	0.2	0	0