XLOC_043638 (gene) - C. hemisphaerica

Overview
NameXLOC_043638
Unique NameXLOC_043638
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_513:603137..608978+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043638 ID=XLOC_043638|Name=XLOC_043638|organism=Clytia hemisphaerica|type=gene|length=5842bp|location=Sequence derived from alignment at scaffold_513:603137..608978+ (Clytia hemisphaerica)
NNaaaaaaaagatttagaatatatatattatagataaattaatttctttg ttcttcagACCACAGGTGTTGAATTTGTGACCAAACAATTGAGCATTGCT TCAACATTGGATAGTGTTGAATTCTTTTTGTATGATTCAGCTGGCAAAGA AGAATTTGGTGATATTGTTGACGTTCATGTATGTAATGTAATATATAATT gcccaaatttgaaccaaaaagCAATTACTTGAATTGCAAatctaaaaaaa agtaaaaggaaATTTGTCcctgttacacgttttttataagaacatccaaa atatttgaagccttcggatgtttttaacatgctcttattttcaccatttt tttagcattttcgtccatttttctaaaaaattgggtattttagagtcTGC ACAACCTTAAAAtgtcttaacttgttcttaacattttggtcatcaaagcc ttatgattttatatagtttgttcttataaaaaaacatatatttgATTGCA AATACCTTGCTCATCTTCTTCAGATGAAAGATGCTAAGATCATTGTTTTg gtttatgacgtcacaaatatAGATTCTTTTGAAAACTTGTCAGAATGGTA TAAGAAACTAGAGGCTGCCAATAATGGAAAAACTTTACATGGTAAGagaa ttctttttcattttatcattaCCTTCTTAAATATCAGACGAATAGGACAT TTTTCGATAAACAGTTAATTTCTAGGTAAATTTAGGCTCTGTTCTGAATT TAAGTCCGTCCGGCTTTAACtggatatttgttttttttacaagcaCTTTA TTTTCATGTTTGTTTTGTCAAAAAGAAATGGTTTGTACTTTTAAAGAAAG ACATTATAGCTACTATTATCTAAAAGAAACTGgacgaaatataaataaag TCGTTGATACACTTTAATTGTTATAAAACGTCAAAATCCCTTCAACTTTA ATGTCTTCCACTGACCCAACAGCTggttggttgaaagtgacgtaaaatca atcaatacgtcacttacaaccaatccaCTGTTAGGTCCATGTTGTAATGT aagaagacattgtaatggtgcatatcatgaataggaaaataaacattttt gtttcttcttcatccTCAGGTGCTATTATAGGTAACAAAGTAGATTTAAC AGATCGCCAAGTGGTGACCAGTGAGATGGGACAAAATTTGGCTGACCAAT TACATCTGCATTTCTTTGAATGTTCTGCTGTAAGAATTTtttcttgttta ctttttaatcggattaaatttgcaagattaaatttcgcgaaattttctgg atttaattttgcaagtcacagttttgagaaattttgcgtggatttaattt cgcgactaagccagaaaacagctgaaaaaaagccatttttgccacaaatg gTTTTCCGCCGAAAATGCAATTTATTAATCCTATTAAAGTATTTTCCTAT TTTCGATAAAAACTGTTCTTTTATATAATATGGGCTATTCGGTGGTTCCC AGGGAAATCTCGTAATTTTGATGGTATTAATTTGCTCTCGGGAAAATTCG TACTTTTCTATGCAGTTCCCGAAAGGCGGTTGGGTTCAGGGTGACTCCAC CATTCTGTCAATTTTTCCCCAGTATCCGTCACATCCAGCGTCAAAACGCG AGTTTTTCGCCTAAAATTCCATagtagtccgggagccaaatcctatatct ccttaaataagcacttttgcttaacccaagattctacagaataaactata catttttagaatcctcaactatcctagttttggaaatggtcggtccccaa agctaactcctggtcaatttttcatactgggNTTTTTTTaaagggaactt attttagcggtcataaaatgggggaatttatttttgacggatttgtccta ttttggacacatttctttcatttctgtaggaattttttaaatttctatta TGAAAAATAGCTAAATTTTGTAGTTCGGTTCTAATTTTAGGTTTCAGTTC TAACTCAAACTGCGAAATAAAAGTAAAacttagttcccttaaggtatttt aaTTTGGTGTAACCCTGCACTCCTATTATCCAGATTTAAAACAGTCAAGA GAAGttgggaaaattttctaatattGCTTTAGGGGATTGTAATCCAAATA CTCAAAATTAATGAAATAAATGATTGTGATACTGTTTAGAGCAAATTAAT GGACTTGTGTTTTGGTCAGCTGCCaatatattcaaaatttaataaacatg GTGGACCcaataagataaaaaaaaagatttagaatatatatattatagat aaattaatttctttgttcttcagACCACAGGTGTTGAATTTGTGACCAAA CAATTGAGCATTGCTTCAACATTGGATAGTGTTGAATTCTTTTTGTATGA TTCAGCTGGCAAAGAAGAATTTGGTGATATTGTTGACGTTCATGTATGTA ATGTAATATATAATTgcccaaatttgaaccaaaaagCAATTACTTGAATT GCAAatctaaaaaaaagtaaaaggaaATTTGTCcctgttacacgtttttt ataagaacatccaaaatatttgaagccttcggatgtttttaacatgctct tattttcaccatttttttagcattttcgtccatttttctaaaaaattggg tattttagagtcTGCACAACCTTAAAAtgtcttaacttgttcttaacatt ttggtcatcaaagccttatgattttatatagtttgttcttataaaaaaac atatatttgATTGCAAATACCTTGCTCATCTTCTTCAGATGAAAGATGCT AAGATCATTGTTTTggtttatgacgtcacaaatatAGATTCTTTTGAAAA CTTGTCAGAATGGTATAAGAAACTAGAGGCTGCCAATAATGGAAAAACTT TACATGGTAAGagaattctttttcattttatcattaCCTTCTTAAATATC AGACGAATAGGACATTTTTCGATAAACAGTTAATTTCTAGGTAAATTTAG GCTCTGTTCTGAATTTAAGTCCGTCCGGCTTTAACtggatatttgttttt tttacaagcaCTTTATTTTCATGTTTGTTTTGTCAAAAAGAAATGGTTTG TACTTTTAAAGAAAGACATTATAGCTACTATTATCTAAAAGAAACTGgac gaaatataaataaagTCGTTGATACACTTTAATTGTTATAAAACGTCAAA ATCCCTTCAACTTTAATGTCTTCCACTGACCCAACAGCTggttggttgaa agtgacgtaaaatcaatcaatacgtcacttacaaccaatccaCTGTTAGG TCCATGTTGTAATGTaagaagacattgtaatggtgcatatcataaatagg aaaataaacatttttgtttcttcttcatccTCAGGTGCTATTATAGGTAA CAAAGTAGATTTAACAGATCGCCAAGTGGTGACCAGTGAGATGGGACAAA ATTTGGCTGACCAATTACATCTGCATTTCTTTGAATGTTCTGCTGTAAGA ATTTtttcttgtttactttttaatcggattaaatttgcaagattaaattt cgcgaaattttctggatttaattttgcgagtcagagttttgagaaatttc gcgtggatttaatttcgcaaataaGCATGAAAACAActgaaaaatagcca tttttgccacaaatggaGACTTTAGACTGGTTTTCCGCCGAAAATGCAAT ttattaatccgattaaagtattttCCCTCTTTTAATAAAAACTGTTCTTT TATATAATGTGGGCTATTCGGTGGTTTCCAGGGAAATCTCGTAATTTTGA TGGTATTAAGTTGTTCTCGGGAAAATTCGTACTTTTCTATGCAATTCCCG AAAGGCGGTTGGGTTCATGGTGTACCCGAATCCGCCATTCTGTCAATTTT TCCCCAGTATCCGTCACACCCAGCGTCAAAACGCGAGTTTTTCGCCTAAA ATTCCatagattttgactttttggtgCCAATCACGAAATTCCTACCGATT TTTTGCTCTTAAATCCAATTTTCTGGACAAAAAAAACCCAAATCGTCCGT CTCCGACAAAGGATCTAAATTCCACTATTCTCTCCAGATTGTCGGTGAAA TCCGCCATTCCGGACGAAGAAAAGACATTTTCTTCCCCTCTGTCAACCTT AAAACCTTAAAACATCTTCTCTAACCAATGACTATCTTTTTTCGGCTTTT GATTTCAAGGAACATTTTATTGGTCATGGGCTTAGGATTTCAATTATAGT AGACTCCCAAGTGCCGTAGCTACCCCTTGGTATTGCCTCCCCCAATAATT CTTccagaaatgttttttttatgaaatggaaaattgttctgttaaaaatt tatttctcCAGCCATTTTTTGCGATTCTATTTTAAAAATTCCCCCCTCGG GctaaaccatggttggccctcgcggtgtcactaaacctCACCCCCCCCCA ATATCAAAATGCACTGCTCCCTGGTATTCGAACATCCGGGTACTCAAAAT TTCGGTTATCTGAAGTAAAATGGAATTCCCTTGGAAAACACTCTCTTTTA TTCTAAAGTAGAgttattttaattttcagattttcaataACCCCTGTTGA GCAAAATTCGGGCCAAGCTTCCCTCAGTTATTCAAAACTAGAATATAGCC ACTGAATATAAAATTGCCTTTTCTGAGACCTTTTTACCTGTAAATTGCCA ATCATATCCTAGCAATACTCAAAACTTCCACAAaaatgccatagttttgt ttgAAGCATGATAAATTAAGGTTTGGTTTGGGTCTAAACCTAGGCATGCC ATGAAAATATCTCAAGATAAATTTTCCCTGAAAAACTTAAGATTATTAAG TAGATTTAGAGTAGAGTagatttatttgaattttcagtttttcaaagAGG TTTCTAACCCCTGTTTTCAAGATGAATTTTCGCTGAAAAACGTAAGAATA TCTAGGTatgataaataaaaacacgctactcttataagaaaaatgtgtGT ACCGTAAGTAAGATTTTTAATAAACATTGCTTGCTGGTTTAAAATTATAT GTCATTTCAAACTCAATTAGTTCCAGATATCggattaaaaagaaaacaat actaaaatcaatttatttcaaacattttataGAAAGATATGAGGAATATT GATGCGCCATTTCAAACAATTGCAAAAGATTATTATGATCGAGTCAATGA AGTACCatcttgatcaaaaataaaattgtttaaaaaatctaTCTGTAAAT AGAGAAATCGCCCCTTCTCACTGACACAGTTGGACCCCTTCCCACTTGgt aaatttgccaaaatattgtccccagtgGATAATTATAATCCAATTTTTTC Cccattgaaaaatctcaaataaaccaatcctcactgcaaaatattatgct tttttcccatccccactagattttctgacttgaaaacaaaagaatttaaa tccccaacCATAAAAGATATGGAAATATAAATCCCCATCAATTTTCAGTC CATAacttttacccccactggtTGAAAATACCCTACCAGGTCTGCGAGAA GGGGTTCTTTCCAAAGAACAACGGTAAAAAACGCTGTTTCAATGTTCGCC TAAAGTTCAACAGAACGTTATGGATGTTGGGAGAGCATTGGATGGATGTA TCACAAGTATAAAGTGACATAATTTTATGAATGAATTGTAAATATGAACA cgtgttttgtttttatcaatgcTGTTACAATGTTACAAGTATTGTAATTA TTTATNAAAcacgtgtttttgtttttatcaatgaTGTTACAATGTTACAA GTATTGTAAATATTTATGAAGAAAAGATTTTAACTTCCTTAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070083TCONS_00070083Clytia hemisphaericatranscript
TCONS_00070084TCONS_00070084Clytia hemisphaericatranscript
TCONS_00070085TCONS_00070085Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070085-proteinTCONS_00070085-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:603137..608978 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
IFT27intraflagellar transport protein 27 homolog isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.09 23.68 94.39 102.43 15.25 10.75 12.08 13.96 12.11 11.4 9.7 10.16 6.39 5.43 3.55 3.4 4.88 5.01 5.16 4.53 6.39 7.23 8.07 8.97 15.71 20.06 5.9 6.64 3.7 2.97