XLOC_043939 (gene) - C. hemisphaerica

Overview
NameXLOC_043939
Unique NameXLOC_043939
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_57:84999..95528+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043939 ID=XLOC_043939|Name=XLOC_043939|organism=Clytia hemisphaerica|type=gene|length=10530bp|location=Sequence derived from alignment at scaffold_57:84999..95528+ (Clytia hemisphaerica)
GTCTAGAGGATATAGAGACCTTTTTATATGAAATCcatgaatgaatgaaa
taaaagaaaatgaattttgaaatatgacGGACTTGTGGCGTACGAAAATC
CAAtcgaaaaacttgaaataaaaaacaacaattttacaGTACACATCATT
AAAGATGAACATGACATCGGAACTTGAGGTatttcttttagaaattcaTC
CCGAATTCATCTAAAAAGATATGGATTGGAGAGATCCTGAAGGGAATGGT
TTTTCAATTCAAACCaaatgaagtttttcaaaatgaagagcTTGAAACGT
GTGACCTTGAActttatacatgtttttttataagtaagTATCTAATAACA
ATTGAGTTAGTGAAATCAAAATCGAATTTGCTGTAAAAGCAGATTCCTAA
AATAAGCACTCGTCAAAGGAAAGTGAAGCTGATTCTTGAATGTCACGAAT
GTGGTGAATCGTTTGCATTGgcaaagatttttaaacatcAAAGGGGTGGG
CCAAAAAATGCACACAGATCTTGAACCATTTACATGTAAGGAGTGTGGAA
AGTCCTTTACACAAGAAAAACAATTCAAATCCTATCATAAAAAAGAATCT
GATGATAGAAATTATGCAACAGTCCATCAATTGTGGTTTGAGTACATTTG
AACGACCAAAACACTGGTTTTATGCACCGAAAACATGAATTTTCTACTTA
AAATATGCCTAATTCGCGCGAAAATTTATTCttgctaaaatatttttttt
gtcaaactcgcgaaagtaaatgtcgtagaTTTTGCGATTTTTAGACCTCG
CTTAGTTTGTTTGCCTTATGATCAACGAGTGTGATTAATTacgtgcgtcc
cgtgccctcgtgggtcgtgCTCCCGAAAAAAATCaagtgggtcctgaaaa
aattaTCATGCGTGGGTCTGGCAGAAAACTGAGAAAAGGCGTGGAtacga
aaaaaaattctcgtgGTGGTTCGTGCGTACCaaataaatgaaatgaaaat
tttttgttttactcAAGTTGATGGCTTACATATCGAGATATATAATCCct
gcaaaaacatttttttataaatttttgccGGTAGAATTGAGCCACGAACC
GGCCAAGAACTACCTactatgagatttttttctgacccacgaactaccca
cgaaGTTTTTTTCGGGACCCACACGATACGAGGGCACGGGTAAGGCACGG
GACGCACGTAATTTTAAAATCACACTCCACAAAATGGCTTTTCAACTGTG
CAGTCGGGCTCAATCTAGATATATTTTTAACCGAAAGACTTACCAGCCGT
ATAATAAGACTTTTATGATATGTTTTAAAATATGTATAATAGTGGAAAGT
TACTTCCTGGCCTAGATGATATTGTATTATGATCCGTGATAATAATGCGA
TCTACAAAAGCCGATGTATGATCTTGTTGAAGGCGACTGGGATCAAATTA
GTGTTTATCCTGAGCTGAGAGCTGAGAATGGTGTAATGGCACTTCCATTC
CACTTCAAAATCAAGGTGCATTTTTTTTTTNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtataaacaaaagtatgacgtcaaacagctctattgttt
caagaagtggcgcaagcttttaaattgttttgaaaagataacggtttttt
cttttgtgatttgaagttatttgaattgagtcaataattccatactctgt
atttcatTCAGTGTAAGTTGTTGAGATTTTgacaggatagaaatattttt
gtaacagagtatggtctccagactaAAGCAAACTTGGAAAAAGTTGAGTg
caggtgcaaaatttgaggttttcaggtgcaagtgCAGACAGTTTTTTAAC
CCCAAGGGCAGAGTTCCGCTATTTTCTCCTTGAGTGcagctaattttagc
aatttttggcctttttgggccaattttcgAGGAATAGGTGCACCAAAATT
TAATCGGGTGCGCTCTTGGAAGAGCGGAACTTggtattttcgaatttttc
ctcaagtgcagcttagccatactctgcaaactgggcTTATATATACCATA
CCCCTCCTCTTATTCCAACACACCCTTCTTATtatagagaaaggaataat
agaccttttcgcctttccatctgccatATTGAATTACCTAttttgtatgc
aaaaattatggtaaccAAATTactgtggtgaaattcccttagaaagtata
tatgcaaaacatatgcaaaaagaaagtatatatTAGTATATAAAAAActt
acagtgtagacctaaagctctaaaacagcatctaataacatgaaaaccag
aatatgattcttcaatgggaatcaaaactgtaaagtgcacttacaaacat
caatttgtcaggtctaacaaaattaataaccacactgtcatcattgacaa
taaaacaaacgattttctgtcaagaaccttgtaaacattccaacaacttc
catcgaaatgatctatcacagctcagtctaccatttttagcgcggtccga
ggattgagctgaGAACGCTCTGCGAACTCCTGAGCAGccgaaaaacttca
atctgtcaatcattttctcaagcgaagagtacacgaagcgattctagctt
tacgatagtgccgcgggtcatcaatggatagtattcaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtattcaattatcattatccctttattttcattcctagaacttt
tgcaaaaaaaaggaaaaatagaaaagttgtattttttactgctctattca
catacacgttgtttttttttataaggaacacgtttataaggaactcgagg
ctgaaagtagtccaaaaaataaggaattgttaaggaactgctcaggctaa
gAATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaaa
actgatttttgtcccgcctttgcgggactttggcttaaagtgcttgagtg
cagcatagggtacaaagtccaaacatgcgtttcccgtaatttttgtttga
agagttaggtctatactgactTACATACCGTgaaattgggtaacttgcat
cagtgaaagctaacatgcatagccctcgaatgactgaccaatctaagcag
caaaatttcaaaacaaatgaactatacagctccgcttgcagctctgctct
actatttttgttttgatttaattttgtattaaatgaccagccaggtcatt
catttgagggctatgcatgttaccgtgagttggtctaatatcgacatccc
tcgtctaattccgacacccttctttagagaaaggaataatatgaaagctt
gaatcactgattgaaaaaggattggtCCTCtttgaccactaagcaaagaa
aaacagtttcaacctttctataaatttcagctgataaagagggtgtcgga
attagaggaggggtgtcgacattagatcaAATTATggtagcctccactga
tgcaagttacccaatctcacggtacataAATTGGCATTAAAGGGAACTTa
ctttggcgggaactaattttggcgagcagcaaaaatcctaaaaaatttta
attttggcgggaacttattttggtgaatagtgaatttttttatttttggg
gtgaactaattttggcgaatgacagcgtaaatctgttctattttgcctta
ttttgagcaattttgatgaacttcaggggttatttaggcaaggaaacaaa
aaatttaattttggcgggaacttattttggcgagtgagcaagatatttaa
ttttggcctgttttggcgggaactaattttggcaaattttgtataaattt
gccaaatccgccaaaattagttcccgccaaaataagttcccttaaggtat
attaaagtgtaatcttgtagaagaaagattaaatttgcttcctttgaaaa
ctagaaataatcaaattctcTCATCtattagaacaagcacttcaaaaaac
cataacattagacataaactcgaGCCGAAAAATCACCCGCAAAGTTAATC
AATCAAAGATAATCCTTAtttggctgacggtaaattattctcctgggaat
agagccgccaaacgatcaaatcaaaacattgatctgaactcGCTGaatgt
gtgatgtcataattactgctttcagtttgtgtgttttgaaaatttaatgt
ttgTACCTTgtcttggtggaattttttaatggcatgaaaacagaatatgc
aatgtctttaagaacaaatttctaaaaggctttgttgttctgtaaatatt
tctttttggattaagaaattccatcttttattgttctaatgattatatat
tatatatatttctTTTATAAAGATGCTTTGTTGTCTTTTTAATCTTTGTG
TAAacttgcatatgttttgcatattttccaactaaatccaaccacggctt
tttcgttcctctatttttgcatacaattcaagatggcggatggaaaggtg
AAAAGtctatgaaagcttgaatcactgattgaaaaaggattattcctctc
tgaccactaagcaaagaaaaacagtttcaacctttctataaatttcagct
agtaaaaagggtgtcggaattagaggggtgtcgacattagaccaagttat
ggTACCCTCTTGGCTGGATGGGCTGTATTGTAGATAGCTAGATCTATATC
TacaccgtgaagtcgggtaacttgcgtCAGTGAAAGGAAACTTGTATAGC
TAGCCatatcaaatgactgaccaatcaaagcagcaaaatttcaaaacaaa
ttaactaCGCAGcaccgcttgcagctctacttaGCTCTACTTTTAGAATC
TCAAATTTGCTGTGCGAGTAAATAAAACAGCGTGGTTGGATAATTAAAAA
TCATGTGAGATCATAAATTTCAAGTTGGACGGGAATTCCAACGTTTCTTC
TTATGCAATATTATACATGATATGACATCACTATTATGATTAGGAGATAT
ACATTTTACCACTcgcaaattttgtaaatcaggttttgattttactttgt
aTTTGAATGAGCAGCCagcaggtcattcatttgagggctatgcatgttag
cctccactgatgcaagttacccgatgtCACGGTAATTACCGTCAACCTGA
TGTTCTAACTTGGGataattggtcgaaacatgggactgttgatatctggc
ctgaaTTTTCACTTATATacttttaaatctctttgacaacaaaccctttt
taaacttttttgttttcgttcaaaatgaccggacgccgattggagaatta
gagaatgccCATGGTATGACTGCCTATCGCccatgggattaacaaataac
aagtgtgtaacttgACGCGCGAATGAcctcaaacgctccatcgttatgct
tctaatttggtcttcttcgttccagacactcgcgtgtgttccactacgga
tttttttcatttaaaagcctactcggtctgaaagagaaatcgtgtgtaaa
aaatgtttttattaatacgctgttcattaactcaaatcaaataactttgg
aggttcggtgaaatggtggctgaattgccgtcctatgttttgtcagatag
tctcAAGTTACAAAGTTAGAGCAATTGACAGTACTCTGATAAAAGTATAC
TTTGTGAATGAAAGAGAAGACCAGTTTTCAATAGTTCGTAGGTATGTTGT
GTAAAAAGTTTAGTTTGAATTTTCTTACTTTTGTTGCCAATTTGACtata
ttttcttttattcagTTACTGTAGGTTCATTCAACATGTAACAACAGTTT
CTGgaacattttgcaaaaaaagttaaaaaaaaaagtttcatagTAACCTT
CAgacaaaatacacaaaaaacatAAGTCTACCTATATTATGTTTTCTGTG
TATTTTGTCTGAAGGTTTTCCTTGTTCTTTTTGGTTGATAATACCGGgtg
cgtcagaaaaaactttggacgtttggtgagccactgggaccgagcaaagt
ctttttgaaactcaaaaccacttttattagaaagaggatagtNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNcaaaatttaagttagactatcctctttctaataaaagtggt
tttgagtttcaaaaagactttgctcggtcccagtggctcaccaaacgtcc
aaagtttttttctggCGCACCCGGTATGATGTTAGCTCAGATAGATAAAA
TCTGCCTGacagtcacactaggaaatctaggtTTCAGAAAATATCTTCTA
CAGAATGTGTTTGCAAAAACAAGGATGTGAATTACTGTTCAAGATCCATA
CCAAAGACAATTTAACttgatttcaagaaaataaaatgattaaaattgCT
AACCTGCAACAGTtacctaatttttgaaaaatatcttatcCAGCAATGTA
CGAAATCTAAGTGCGTCTTTTCTGTAGATCTTTTCTCGTAAAGTTGtttt
tcaaattagttttcaaggttgacaTGGCTCAAATCTTTTCATGTAATGGC
TCAAATTGTTGGGAattttgcaaagcttttttaTAAGTTAAGCCCATTAA
AATAGACAAAATCAAGATTTTactgttgaaattgaaattgatgggttttt
taaaagtttgtaaTCATGGATGCCAGATTCCAAGAGCTAAAACTTTGTAC
CATTTTCAACTTTATTCCTACTTTCCCTCCtgggaaataaaaatttctgc
TGGAATACTTGAATTTTAATGcttagttttgataaaattcttcCATATAA
AATTGTAGGTTCAACTTTCTTCATACTTGTCCTCCTGAAATGAAAATTGC
TGCTGGAGTAAGTATTTTAATGTTTTAGTTTTGATTAAATTCGTCCATAA
AAATTGGTTGTAGTTTTATTTTAGCCTATNATTTTAATGTTTTAGTTTTG
ATTAAATTCGTCCATAAAAATTGGTTGTACTTTTATTTTAGCCTATAATA
AAAATGAGTCTGGAACTTAAAAATATAATAATCAAAGAGCTTGGCATCCA
CATCAAATTCTCATTTGATattaaagtagaaaaaaatatgattGGTAAAT
GTAACATCTCTATTGATAATTTACTTAACCAACTTGAGCTTGTTGATGAT
GAAAgaagttattttcattttataccaAGTCATGATAGCTGTCAATCTAA
ACAAAACTCGAGGAAGAATGATGATCAATCCAAAACGACAGAAGATCTCT
CTCAAGAAAGCATGCTAGAAAATGATGCTGTCGTGATTTCGGAAGAAAAT
AATGCTGTTACGATTTCAGAAGAAAGTATTTACCAACCAAGTAGATTGTC
AGAAAACTATACAGAAAGTTCCACAAGGCTTAGGTCTGCTGAGaataaaa
ataatgatttaaGTCAAATTGAATCACTTATACAAAACAAGAAAACTGTG
GAAAATGATAATGTCAATGCACTTTACCGTGACATGGAGAACCAAACAAA
TGATGAGATAGAAGCTTCTGTTGAAAAACAGAAAGTAAAAAGGAAATCCC
AAACCCTAAAATCTCAAgctaatgagaaaataaaacctGCTTATCTATGC
AAGACATGCTTGAAGTATTACACCTCTAAAAGTCGTCTAGATCGGCATAT
TCAAACACATACTAAACCTTATCAATGTAAGGATTGTGGTAAATTCTTTT
CACAGCAGAAACATCTCAAAATTCATCATGATAATATTCACAAGGgtatc
aaatattttaaatgcaCTGAATGTGATAAGGGGTTCGTAACAAAGCTAAG
ACTTGATGCTCATATGCGATCTCACCAAGGTATAAAACCATTTAAATGTC
AAGTTTGTGGGCTATGTTTTTCATGGAAGAGAAGTCTTGTAACTCATGAA
AAAACTCATCAAGGAGATGATCCATTTATTTGTGGAGAATGTGGGAAAGA
ATTCAAAGAGAGGAAGGAACTTAAAGTACACACTGGAGAATTTCATAAAG
GAGGTAAACCATTTTATTGCTGTAAGTGCAACAGAAACTTCAGCCGTAGA
AGTCATTTAACAAGACATTATGCTTCTCACCATAGATAAATTATTAGTct
gaattttatttatttattctttttctatttatttccttttttaaacTTAC
CTACTATGTGTTTACTATGTGTTTAGCTACTGTGTTTTTTATTAAGTCTA
TTACTTATTCAATAACAGAAAAATCATACAGTTATTATCTGGACAAAATG
TCATTTAATACAGCTGGAGCTTcacatatttttcatttttaaggaatttt
GTTGAacttaataataataaagtttGTATAAGAAGAAAATATTGATTGAT
TTGTCATCAAAATCAAATAAACTAATTCTAAAAAAGTCTTTCCATTATGT
TGCCAATATCCATCTAAACAGGGAATTTATGGGGTTGTGTACCTACTTTT
GAGAGAGAACCAAGTAACTGACAGTTATTCTTGTCAATAAAGGTCTTTTG
GtctcatttattttttatatgtgAAATTTCAGAGAGTGTTCATAGGTGTT
AGAATAATATTTTGTATGCATATTTATTTATTGCTAGGGaacttttttac
aatattttatactTGCGGTCCTAGAGGTTGTCACAGAATATTGTATATAT
TGTATAAAGGAAGGCtttcaaagaaatttcaacaaaatttctaaaaaaaa
gtaTTGCACCATGTATAATTTTAATGACATTTCAatagcaaaattttgtt
ggagCAAAACATAAATCACAGCAAATTATC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070606TCONS_00070606Clytia hemisphaericatranscript
TCONS_00070607TCONS_00070607Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070607-proteinTCONS_00070607-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:84999..95528 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.66	12.04	5.87	4.76	12.36	8.15	7.5	8.07	4.63	3.04	4.52	2.46	2.47	2.15	2.3	2.27	2.82	2.88	2.08	1.7	2.45	2.05	15.98	15.29	3.96	4.37	2.12	2.01	9.4	11.56