TCONS_00003198-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003198-protein
Unique NameTCONS_00003198-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length269

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003198-protein ID=TCONS_00003198-protein|Name=TCONS_00003198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MLSTRSLSQGFAKYISPKVVAVSCQRTVLPPVLEEATGDPLPTSPYKFSQ
NSRAPKTQTVLVNSLLGKQQQRFSHTDVNVPSFDEYRRDSCKDAETRSSE
TDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVD
LSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRV
THPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAP
LNLEVPPYQFSTETTLIVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001764XLOC_001764Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003198TCONS_00003198Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005805Rieske_Fe-S_prot_C
IPR017941Rieske_2Fe-2S
IPR006317Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR004192Ubiquinol_cyt_Rdtase_TM
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0008121ubiquinol-cytochrome-c reductase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005805Rieske iron-sulphur protein, C-terminalPRINTSPR00162RIESKEcoord: 207..218
score: 68.12
coord: 229..241
score: 67.31
coord: 241..253
score: 72.69
IPR017941Rieske [2Fe-2S] iron-sulphur domainGENE3D2.102.10.10coord: 141..269
e-value: 1.4E-46
score: 157.2
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 156..256
e-value: 1.1E-11
score: 44.3
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 199..267
score: 19.05
IPR017941Rieske [2Fe-2S] iron-sulphur domainSUPERFAMILY50022ISP domaincoord: 129..267
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitTIGRFAMTIGR01416TIGR01416coord: 104..269
e-value: 2.6E-56
score: 188.4
IPR004192Ubiquinol cytochrome reductase, transmembrane domainGENE3D1.20.5.270coord: 75..137
e-value: 3.5E-21
score: 74.8
IPR004192Ubiquinol cytochrome reductase, transmembrane domainPFAMPF02921UCR_TMcoord: 75..140
e-value: 4.7E-25
score: 87.7
NoneNo IPR availableCDDcd03470Rieske_cytochrome_bc1coord: 146..269
e-value: 1.75572E-80
score: 240.154
NoneNo IPR availableSUPERFAMILY81502ISP transmembrane anchorcoord: 74..142

Blast
[Close]
BLAST of TCONS_00003198-protein vs. Swiss-Prot (Human)
Match: UCRI (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 2.091e-92
Identity = 124/197 (62.94%), Postives = 149/197 (75.63%), Query Frame = 0 
Query:   73 FSHTDVNVPSFDEYRRDSCKDAETRSSETDLSRRAFTYLMCAGLGVAATHAGKNAALDFLSTMSASADVLAIAKVEVDLSVIPPGKNATIKWRGKPLFVRHRTQDEIDQVRAVATDSLRDPEADEDRVTHPNYLVLLGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPYQFSTETTLIVG 269
            +SHTD+ VP F EYRR    D+   S E+  +R+ F+YL+     V   +A KNA   F+S+MSASADVLA+AK+E+ LS IP GKN   KWRGKPLFVRHRTQ EI+Q  AV    LRDP+ D DRV  P +++L+GVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIR GPAPLNLEVP Y+F+++  +IVG
Sbjct:   78 YSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
The following BLAST results are available for this feature:
BLAST of TCONS_00003198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UCRI2.091e-9262.94Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
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