TCONS_00003295-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003295-protein
Unique NameTCONS_00003295-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003295-protein ID=TCONS_00003295-protein|Name=TCONS_00003295-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDV
FFYQADDEHYIPRAVLLDLEPRVIDSIMQSPYANLYNPENIYTSKDGGGA
GNNWGHGFTQAESLHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMG
SYMLERINDRYPKKLIQTYSVFPQQDDISDVVVQPYNSMLTLKRLTQNAD
CVNVLDNTALNRIAADRLHIPNPTFSQVNQLVSTIMATSTTTLRYPGYMN
NDLIGLIASLIPTSRLHFLMTGYTPLTTDQKTTSVRKTTVLDVMRRLLQP
KNMMVATPRDRKRNHCYISILNIIQGEVDPTQVHKSLQRIRERKLAEFIP
WGPASIQVALSRKSPYIQTAHRVSGLMLANHTSIASVFERTCKLYDKLRK
REAFLEQYKKVDMFKDSLDELDNSREIVQQLIDEYYAATKPDYIQWGTQS
QT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001832XLOC_001832Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003295TCONS_00003295Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002454Gamma_tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO:0007020microtubule nucleation
GO:0031122cytoplasmic microtubule organization
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
GO:0000930gamma-tubulin complex
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031122 cytoplasmic microtubule organization
biological_process GO:0007017 microtubule-based process
biological_process GO:0007020 microtubule nucleation
cellular_component GO:0000930 gamma-tubulin complex
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000217TubulinPRINTSPR01161TUBULINcoord: 108..132
score: 30.58
coord: 380..408
score: 36.35
coord: 193..213
score: 42.14
coord: 96..107
score: 50.24
coord: 52..71
score: 52.52
coord: 179..192
score: 60.0
coord: 11..31
score: 63.24
coord: 134..152
score: 64.39
coord: 153..174
score: 36.63
IPR002454Gamma tubulinPRINTSPR01164GAMMATUBULINcoord: 339..362
score: 82.94
coord: 420..443
score: 56.38
coord: 251..262
score: 79.43
coord: 116..131
score: 74.41
coord: 286..301
score: 92.38
coord: 31..51
score: 70.98
coord: 364..384
score: 80.65
coord: 193..206
score: 76.79
IPR002454Gamma tubulinCDDcd02188gamma_tubulincoord: 3..435
e-value: 0.0
score: 932.34
IPR003008Tubulin/FtsZ, GTPase domainSMARTSM00864Tubulin_4coord: 48..247
e-value: 4.1E-56
score: 202.4
IPR003008Tubulin/FtsZ, GTPase domainPFAMPF00091Tubulincoord: 4..214
e-value: 2.4E-68
score: 230.1
IPR003008Tubulin/FtsZ, GTPase domainGENE3D3.40.50.1440coord: 1..269
e-value: 1.1E-103
score: 345.8
IPR003008Tubulin/FtsZ, GTPase domainSUPERFAMILY52490Tubulin nucleotide-binding domain-likecoord: 2..246
IPR018316Tubulin/FtsZ, 2-layer sandwich domainSMARTSM00865Tubulin_C_4coord: 249..393
e-value: 6.8E-28
score: 108.7
IPR018316Tubulin/FtsZ, 2-layer sandwich domainGENE3D3.30.1330.20coord: 270..383
e-value: 6.1E-46
score: 154.5
IPR018316Tubulin/FtsZ, 2-layer sandwich domainPFAMPF03953Tubulin_Ccoord: 265..391
e-value: 1.7E-47
score: 160.6
NoneNo IPR availableGENE3D1.10.287.600coord: 384..452
e-value: 6.2E-16
score: 57.8
IPR017975Tubulin, conserved sitePROSITEPS00227TUBULINcoord: 142..148
IPR008280Tubulin/FtsZ, C-terminalSUPERFAMILY55307Tubulin C-terminal domain-likecoord: 247..443

Blast
[Close]
BLAST of TCONS_00003295-protein vs. Swiss-Prot (Human)
Match: TBG1 (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 835.484 bits (2157), Expect = 0.000e+0
Identity = 387/451 (85.81%), Postives = 422/451 (93.57%), Query Frame = 0 
Query:    1 MPREIITLQVGQCGNQIGMEFWKQLCAEHGISPEGMLEDFATDGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIDSIMQSPYANLYNPENIYTSKDGGGAGNNWGHGFTQAESLHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYMLERINDRYPKKLIQTYSVFPQQDDISDVVVQPYNSMLTLKRLTQNADCVNVLDNTALNRIAADRLHIPNPTFSQVNQLVSTIMATSTTTLRYPGYMNNDLIGLIASLIPTSRLHFLMTGYTPLTTDQKTTSVRKTTVLDVMRRLLQPKNMMVATPRDRKRNHCYISILNIIQGEVDPTQVHKSLQRIRERKLAEFIPWGPASIQVALSRKSPYIQTAHRVSGLMLANHTSIASVFERTCKLYDKLRKREAFLEQYKKVDMFKDSLDELDNSREIVQQLIDEYYAATKPDYIQWGTQSQ 451
            MPREIITLQ+GQCGNQIG EFWKQLCAEHGISPEG++E+FAT+GTDRKDVFFYQADDEHYIPRAVLLDLEPRVI SI+ SPYA LYNPENIY S+ GGGAGNNW  GF+Q E +HEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSG+GSY+LER+NDRYPKKL+QTYSVFP QD++SDVVVQPYNS+LTLKRLTQNADCV VLDNTALNRIA DRLHI NP+FSQ+NQLVSTIM+ STTTLRYPGYMNNDLIGLIASLIPT RLHFLMTGYTPLTTDQ   SVRKTTVLDVMRRLLQPKN+MV+T RDR+ NHCYI+ILNIIQGEVDPTQVHKSLQRIRERKLA FIPWGPASIQVALSRKSPY+ +AHRVSGLM+ANHTSI+S+FERTC+ YDKLRKREAFLEQ++K DMFKD+ DE+D SREIVQQLIDEY+AAT+PDYI WGTQ Q
Sbjct:    1 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ 451
The following BLAST results are available for this feature:
BLAST of TCONS_00003295-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBG10.000e+085.81Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]
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