TCONS_00003478-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003478-protein
Unique NameTCONS_00003478-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1157

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003478-protein ID=TCONS_00003478-protein|Name=TCONS_00003478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1157bp
MTPLDDLRSAHIEGSTYVAYLKKSELILTAGAEGDVRLYPGLYDDETLSV
SFGSKITSLAVNGDLVVISNDQNEVKSYTLPKLELDNVLLRFTSPINNVC
INEDRSLIAAGSSDFSIKCTSRKGTEQKTLIGHTAPVLSVCFLGNGTLVS
NSCDGSVKLWNISEQKCSSTLEILPKYNSVPDHHGIMSLHEDKKLLAIPV
EKSIKVISTLNYEEEFTLENQHSKPVSNVCWSDDGEYLISSAMNGEIFCW
NTKTKECFKKFEHSESKNITCLVWKHDSNEIIFGDDEGNFGVFEVPIKSA
TKEKVVDEFGLDEDDDIIASAVINNHKDDEDTNDGDIFLSSAKKKGKKRS
LKIDNDDDDDDNFSLGGGGGISDDEDGVSNPSKKSRINNMDNFLDDQADE
DEEEDEASISLNLIKEGFLEPIRKPIIDDEDDDSASIASAKVDKTSSKGQ
QVVAAKIDFFMQPAFQPSSTPVHLQHRFMLWNSIGIIRCHRDEEVSSIDV
EFHNASTSHPLHIPNVLDNTMATLSKTIVAFACKTQDNIPSKLSCIHFGS
WDGNKEWSVSMNENEDIEAIGANSSQIFVATSKRLLRVFTVGGVQLQLVQ
MPGPVVSIALHEKEMILLYHKSTGLNKTQCLGISRYVCKKMSWSLVNDES
LFMKPESTVVWLGYSTEGTPGFVLSTGEILLLHRSQKTWIEIGNTKKTVK
NKSDNYWVIGIDEQSSQLRCIYCKGANFPSLLPRPIPTMIPFQLPLCEMK
TEKSIKEHELMKNSLKASNMNYSQQILRLPVDNDSAERQHMQLLMQLFAL
ACKADREFRAVEICKLMPTADSISLAIQYASTMKKINVARKLTELAQSRA
QEEEDEENGMESDEEAEELSDGEFSDVEIEETTSTKMPIENRGKKHPHIP
ARTKTTTLSRGLGRNSLSSIQSKPSQPKDNDEDMMSEDEEQDETQESQSK
SQEPPKSTPSQNSTPRPKGNPFKISRENSATKSGAKGTDYFETLDSQQLQ
KTKQASKTINKAAQSKTKKVKIPTQGKIEKSLKVKEKIDFSVKIKNTEKK
TEPNTKENENNAKKSTMTGFQLFLENEKEKNAGGEETDNLVPAIMKLWKT
LSPEEKKDWNEKAKGTNQQPALNNNNTINNKKSEQKKETGKGGSVKSKLS
SFAFNKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001934XLOC_001934Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003478TCONS_00003478Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR009071HMG_box_dom
IPR024977Apc4_WD40_dom
IPR022100Mcl1_mid
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 211..251
e-value: 1.2E-5
score: 34.7
coord: 254..294
e-value: 4.7
score: 12.8
coord: 82..121
e-value: 0.48
score: 19.0
coord: 5..40
e-value: 180.0
score: 2.7
coord: 123..161
e-value: 6.0E-8
score: 42.4
IPR001680WD40 repeatPFAMPF00400WD40coord: 125..161
e-value: 1.5E-5
score: 25.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 130..170
score: 11.879
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 219..260
score: 11.377
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 186..627
e-value: 1.2E-20
score: 72.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 6..180
e-value: 4.6E-22
score: 77.8
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 1060..1142
e-value: 3.3E-7
score: 30.1
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 1056..1114
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 191..276
e-value: 1.3E-7
score: 31.7
IPR022100Minichromosome loss protein Mcl1, middle regionPFAMPF12341Mcl1_midcoord: 464..746
e-value: 2.4E-77
score: 260.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1105..1157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 847..1022
NoneNo IPR availableCDDcd01390HMGB-UBF_HMG-boxcoord: 1064..1114
e-value: 4.04905E-5
score: 41.8446
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 130..303
score: 15.373
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 11..296

Blast
BLAST of TCONS_00003478-protein vs. Swiss-Prot (Human)
Match: WDHD1 (WD repeat and HMG-box DNA-binding protein 1 OS=Homo sapiens GN=WDHD1 PE=1 SV=1)

HSP 1 Score: 532.717 bits (1371), Expect = 3.211e-170
Identity = 377/1149 (32.81%), Postives = 597/1149 (51.96%), Query Frame = 0
Query:    7 LRSAHIEGSTYVAYLKKSELILTAGAEGDVRLYPGLYDDETLSVSFGSKITSLAVNGDLVVISNDQNEVKSYTLPKLELDNVLLRFTSPINNVCINEDRSLIAAGSSDFSIKCTS-RKGTEQKTLIGHTAPVLSVCFLGNGT-LVSNSCDGSVKLWNISEQKCSSTLEILPKYNSVPDHHGIMSLH---EDKKLLAIPVEKSIKVISTLNYEEEFTL-ENQHSKPVSNVCWSDDGEYLISSAMNGEIFCWNTKTKECFKKFEHSESKNITCLVWKHDSNEIIFGDDEGNFGVFEVPIKSATKEKVVDEFGLDEDDDIIASAVINNHKD----DEDTNDGDIFLSSAKKKGKKRSLKIDNDDDDDDNFSLGGGGGISDDEDGVSNPSKKSRINNMDNFLDDQADEDEEEDEASISLNLIKEGFLEPIRKPIIDDEDDDSASIASAKVDKTSSKGQQVVAAKIDFFMQPAFQPSSTPVHLQHRFMLWNSIGIIRCHRDEEVSSIDVEFHNASTSHPLHIPNVLDNTMATLSKTIVAFACKTQDNIPSKLSCIHFGSWDGNKEWSVSMNENEDIEAIGANSSQIFVATSKRLLRVFTVGGVQLQLVQMPGPVVSIALHEKEMILLYHKSTGLNKTQCLGISRYVCKKMSWSLVNDESLFMKPESTVVWLGYSTEGTPGFVLSTGEILLLHRS-QKTWIEIGNTKKTVKNKSDNYWVIGIDEQSSQLRCIYCKGANFPSLLPRPIPTMIPFQLPLCEMKTEKSIKEHELMKNSLKASNMNYSQQ--ILRLPVDNDSAERQHMQLLMQLFALACKADREFRAVEICKLMPTADSISLAIQYASTMKKINVARKLTELAQSRAQEEEDEENGMESDEEAEELSDGEFSDVEIEETTSTKMPIENRGKKHPHIPARTKTTTLSRGLGRNSLSSIQSKPSQPKDNDEDMMSEDEEQDET----QESQSKSQEPPKSTPSQNS---TPRPKGNPFKI---SRENSATKSGAKGTDYFETLDSQQLQKTKQASKTINKAA-------------QSKTKKVKIPTQGKIEKSLKVKEKIDFSVKIKNTEKKTEPNTKENENNAKKSTMTGFQLFLENEKEK----NAGGEETDNLVPAIMKLWKTLSPEEKKDWNEKAKG 1115
            +R  H EG T V +      I+T G++GDVR++  L DD+   ++ G K  S A+    +V +   N ++ +T P+   D +L RFT+  N+V  N D + IAAGSSDF +K       ++QKT  GH APVLS+ F      L S SCDGSV++W IS+Q C+ +  +L K N V +   I  L    +  KLLAIPVEKS+K+    ++  +F L +N  S+ ++ V WS  G+YL + ++NG I  WN +TK+C ++ +H +   I  L W      I + D EGN G+ E          V D  G      + +S V  ++ D    D+ +N GD FL+    +    S  I NDD+DD++  +  G            P ++S I               E+DE S+ ++++K G        ++ +E++D    +   +   +S+ +      +    Q  FQ  STP+HL HRFM+WNSIGIIRC+ DE+ ++IDVEFH+ S  H  H+ N L+ T+A LS   +  AC++ D + SKL C+HF SWD +KEW + + +NEDIEAI         ATS  LLR+FT+GGVQ ++  + GPVVS+A H +++ ++YH+ TG +  QCLG+      K    +++ + L +  +S + W+G+S EGTP +V S G + +L+R    TW  I NT++  K KSD+YWV+GI E   QLRCI CKG+ FP  LPRP   ++ F+LP C++ TEK   E +  ++ +  ++++Y  +          + A ++  +LLM++ AL+CK +REFR VE+  LM T ++++LAI+YAS  +K+ +A+KL+ELA                 E+A EL+  +  + E EE    K+   N G  +         T  S+   RN +          +D ++   ++DEE+ E     Q S SKS      +    +   + + + NPFK+   S+E + + + A+ T+  + +     + T  +  T N+ +             Q+           +  K+ +VKE+      +KN   +T P     +N   +   TGFQ++LE  +      N    +  +++   M  ++ LS EE+K W  KAKG
Sbjct:    8 MRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRIWEDLDDDDPKFINVGEKAYSCALKSGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKIVDVMDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLE---------NVCDPSGKTSSSKV-SSRVEKDYNDLFDGDDMSNAGD-FLNDNAVEIPSFSKGIINDDEDDEDLMMASG-----------RPRQRSHI--------------LEDDENSVDISMLKTG------SSLLKEEEEDGQEGSIHNLPLVTSQ-RPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQGWAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQLLELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKGQMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVELADLM-TQNAVNLAIKYASRSRKLILAQKLSELAV----------------EKAAELTATQVEEEEEEEDFRKKL---NAGYSN-------TATEWSQPRFRNQVE---------EDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEE-----NLKNVLSET-PAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKG 1071          
The following BLAST results are available for this feature:
BLAST of TCONS_00003478-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDHD13.211e-17032.81WD repeat and HMG-box DNA-binding protein 1 OS=Hom... [more]
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