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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00003558-protein ID=TCONS_00003558-protein|Name=TCONS_00003558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=890bp
MKRMRGKINPSYNNGADENYNMKKDFLHMSEMDFTKFLLDQKHPKDEKSK
DYWNKALRKISNVSKWKHLASCRRSHETSRRSMTPKPGGPLTKKKSEEQF
FENLNSTLNGIASECEESDSESDDDLHRSPSPIRQNRGHHHHHAVRDLSK
SSNKALIIYLSKLARSKNVDDELDLDFIESLLNNGADINTADRYGQTVFH
EVARTWHCDVGKFILEQNADINSRDKFGRTPLHVASAVNYPEMVKFLIEN
GADRDARTFGEEQTPVHYAAKNDAVDSLKMLLKIGCDIEVRDSKMRTPLQ
VAAELDRSETALYLVEQGATVGVCDSSGLSALSLMIEKMPPTAKVALNQY
HVTDRPNRKQYFYLDLLEPIQPGTIQQFARTPMQVVIQGKQMNLLLHPVF
RRLLQVKWNHFARNRHMWHLLGQFMFVLLWSIVAISTPTASVSEYSQPFS
KTWWRVILESLAVLATLIFIVQELYEWRCSIREHKRLSRWRSSELQKDLM
YCHPRWPEERKYILQELERIQGSRISYFADWWNIFDWIVYIWISAGVVVR
VIALCGDEEASNIHREILALSMIVIWIRLLKAMRAFQALGPFIVMLGHIL
RDTLRFGFLYFEFFIPYIIAFWMLFGGSERAAIMARSKESGDGWEQVNDL
IYSVWLVTVVGEYDFNAIVSVDKLMAQILVGTFTALSGILLLNLFIALMS
DTFQRVYDNAKANALMQMANSINTHQQNMGAKSNDRFRLFIQGKCAPEVL
YYDDDDNQEEGELQKVTIQIKQVVDEIREEIEEKLPSAETINQMQSQGLQ
KFDEMSVQFNQQALKYEQEIKTMNMKIDRLTDLVTLMLGGSDKAAALLRE
SKEGGTAESRRKLPSIFDLKPGRFQQTPQDKEQKDDEKEE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 813..833 |
| None | No IPR available | COILS | Coil | Coil | coord: 763..783 |
| None | No IPR available | COILS | Coil | Coil | coord: 887..890 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 415..708
e-value: 1.8E-19
score: 69.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 114..148 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 850..890 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 71..94 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 189..315
e-value: 3.82732E-31
score: 118.64 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 522..705
coord: 426..480 |
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 294..323
e-value: 21.0
score: 14.0
coord: 151..190
e-value: 970.0
score: 5.1
coord: 227..256
e-value: 8.4E-6
score: 35.3
coord: 261..290
e-value: 0.0035
score: 26.6
coord: 194..223
e-value: 220.0
score: 9.9 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 294..326
score: 9.11 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 227..259
score: 13.224 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 194..226
score: 9.805 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 261..293
score: 11.995 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 135..242
e-value: 1.0E-20
score: 73.4 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 243..358
e-value: 1.8E-27
score: 95.4 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 261..322
e-value: 4.7E-8
score: 33.4
coord: 175..255
e-value: 2.5E-11
score: 43.9 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 174..332
score: 46.156 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 175..336 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 443..710
e-value: 3.8E-20
score: 72.1 |
Blast
BLAST of TCONS_00003558-protein vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 2.015e-18 Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 0
Query: 175 LDFIESLLNNGADINTADRYGQTVFHEVARTWHCDVGKFILEQNADINSRDKFGRTPLHVASAVNYPEMVKFLIENGADRD-ARTFGEEQTPVHYAAKNDAVDSLKMLLKIGCDIEVRDSKMRTPLQVAAELDRSETALYLVEQGATVGVCDSSGLSALSLMI 336
L +++LL GA N ++ +T H AR H +V K++L+ A +N++ K +TPLH A+ + + MVK L+EN A+ + A T G TP+H AA+ V+++ LL+ K TPL VAA+ + A L+E+ A +GL+ L + +
Sbjct: 417 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG--HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 577
The following BLAST results are available for this feature:
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