TCONS_00003581-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003581-protein
Unique NameTCONS_00003581-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003581-protein ID=TCONS_00003581-protein|Name=TCONS_00003581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
VKNEILKFIISNANQIMIFEDLEPVLEVIFSYLDDSSLRSAELVCKQWLW
CIEDSMLWRKLIKQKVHRETVWKGFGKRRGWMDSLNTFSEEFDHKYFRAL
YLNTEKDIKNLESNWKTGKHQLTTVSCEAEYREGVYCLQSDEEQIVSGHR
DNTVKIWDTKTLACKKMIKGHTGSVLCLQYEGNLLITGSSDSTVRIWNLE
TGQEINKLMQHSDAVLTLRLQNSTLITGSKDRSIIVWDVHSPNAASLRMK
MEGHEKAVNVIDFDDKYIVSGSGDRTIKVWDSNTFNFIRNLAGHSRGVNC
LQYRTPLVVSGSTDQTIMLWNVEQGTCLTVFKTYSEMLVRCLQFNDHYIV
SGGHDGVIKVWNLKAALHGRPEAELFIHSCKPHNNRISHLSIDHFQIVSC
SLDDTICMLDFDEASFEVT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001998XLOC_001998Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003581TCONS_00003581Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR001810F-box_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011041Quinoprot_gluc/sorb_DH
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 268..282
score: 43.39
coord: 349..363
score: 36.61
coord: 185..199
score: 38.06
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 201..238
e-value: 3.1E-4
score: 30.1
coord: 373..410
e-value: 1.4
score: 16.1
coord: 244..281
e-value: 9.7E-7
score: 38.4
coord: 161..198
e-value: 2.0E-7
score: 40.7
coord: 284..321
e-value: 9.4E-5
score: 31.8
coord: 324..362
e-value: 5.5E-4
score: 29.3
coord: 124..158
e-value: 0.11
score: 21.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 287..321
e-value: 1.7E-4
score: 22.2
coord: 134..158
e-value: 0.0027
score: 18.4
coord: 251..281
e-value: 1.0E-4
score: 22.9
coord: 325..362
e-value: 5.3E-4
score: 20.6
coord: 164..198
e-value: 4.0E-6
score: 27.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 251..290
score: 14.017
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 208..247
score: 11.645
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 339..364
score: 9.406
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 291..330
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 168..207
score: 15.488
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 141..161
score: 9.172
NoneNo IPR availableGENE3D2.130.10.150coord: 234..318
e-value: 3.9E-27
score: 94.8
NoneNo IPR availableGENE3D1.10.10.670coord: 319..358
e-value: 4.0E-13
score: 48.6
coord: 359..417
e-value: 4.2E-7
score: 29.3
NoneNo IPR availableGENE3D2.40.50.140coord: 190..233
e-value: 3.1E-15
score: 55.1
coord: 131..189
e-value: 9.7E-16
score: 56.7
NoneNo IPR availableGENE3D1.20.1280.50coord: 20..130
e-value: 1.5E-12
score: 47.3
NoneNo IPR availableCDDcd00200WD40coord: 131..406
e-value: 1.07007E-60
score: 199.483
IPR001810F-box domainPFAMPF12937F-box-likecoord: 25..61
e-value: 2.1E-8
score: 33.8
IPR001810F-box domainSUPERFAMILY81383F-box domaincoord: 23..85
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 185..199
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 308..322
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 225..239
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 349..363
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 145..159
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 268..282
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 128..371
score: 51.254
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 129..365
IPR011041Soluble quinoprotein glucose/sorbosone dehydrogenaseSUPERFAMILY50952Soluble quinoprotein glucose dehydrogenasecoord: 345..413

Blast
[Close]
BLAST of TCONS_00003581-protein vs. Swiss-Prot (Human)
Match: FBW1A (F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1)

HSP 1 Score: 425.246 bits (1092), Expect = 6.904e-145
Identity = 208/395 (52.66%), Postives = 275/395 (69.62%), Query Frame = 0 
Query:   22 LEPVLEVIFSYLDDSSLRSAELVCKQWLWCIEDSMLWRKLIKQKVHRETVWKGFGKRRGWMDSL----NTFSEEFDHKYFRALYLNTEKDIKNLESNWKTGKHQLTTVSCEAEYREGVYCLQSDEEQIVSGHRDNTVKIWDTKTLACKKMIKGHTGSVLCLQYEGNLLITGSSDSTVRIWNLETGQEINKLMQHSDAVLTLRLQNSTLITGSKDRSIIVWDVHSPNAASLRMKMEGHEKAVNVIDFDDKYIVSGSGDRTIKVWDSNTFNFIRNLAGHSRGVNCLQYRTPLVVSGSTDQTIMLWNVEQGTCLTVFKTYSEMLVRCLQFNDHYIVSGGHDGVIKVWNLKAALHGR-PEAELFIHSCKPHNNRISHLSIDHFQIVSCSLDDTICMLDF 411
            L+ + E I SYLD  SL +AELVCK+W     D MLW+KLI++ V  +++W+G  +RRGW   L            + ++RALY    +DI+ +ESNW+ G+H L  + C +E  +GVYCLQ D+++IVSG RDNT+KIWD  TL CK+++ GHTGSVLCLQY+  ++ITGSSDSTVR+W++ TG+ +N L+ H +AVL LR  N  ++T SKDRSI VWD+ SP   +LR  + GH  AVNV+DFDDKYIVS SGDRTIKVW+++T  F+R L GH RG+ CLQYR  LVVSGS+D TI LW++E G CL V + + E LVRC++F++  IVSG +DG IKVW+L AAL  R P   L + +   H+ R+  L  D FQIVS S DDTI + DF
Sbjct:  189 LDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 582

HSP 2 Score: 94.3597 bits (233), Expect = 8.439e-21
Identity = 60/212 (28.30%), Postives = 104/212 (49.06%), Query Frame = 0 
Query:  203 QEINKLMQHSDAVLTLRLQNSTLITGSKDRSIIVWDVHSPNAASLRMKMEGHEKAVNVIDFDDKYIVSGSGDRTIKVWDSNTFNFIRNLAGHSRGVNCLQYRTPLVVSGSTDQTIMLWNVEQGTCLTVFKTY--SEMLVRCLQFNDHYIVSGGHDGVIKVWNLKAALHGRPEAELFIHSCKPHNNRISHLSIDHFQIVSCSLDDTICMLDFD 412
            Q I+   + S  V  L+  +  +++G +D +I +WD    N    +  + GH  +V  + +D++ I++GS D T++VWD NT   +  L  H   V  L++   ++V+ S D++I +W++   T +T+ +        V  + F+D YIVS   D  IKVWN             F+ +   H   I+ L      +VS S D+TI + D +
Sbjct:  294 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWD---KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 494
The following BLAST results are available for this feature:
BLAST of TCONS_00003581-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBW1A6.904e-14552.66F-box/WD repeat-containing protein 1A OS=Homo sapi... [more]
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