TCONS_00003644-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003644-protein
Unique Name	TCONS_00003644-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	540

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003644-protein ID=TCONS_00003644-protein|Name=TCONS_00003644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
MENNSIGQYRSHDPPKNFAVRVTFWKVKPGSVIPTNRYQQNIELAEEAHE
LVDQYNKDEEKEEVVIHWQEKLFSSREFDHYNDPLNCISALEKKYHDDIQ
YIKSSQGDRPNQRIFTYIDSDTAAMLHEFSQVTLSENEHQNVLMDKMSQN
RYTGSFKPQAKLNQQGLRRRNIITNDPTQAMKSNRIISTPVKLMKIMVDV
GSTNSNGVRIEDERVICTVKINANGLIVIQPDIEMDEIYTLETYHETRSV
YRYQIEHASDEMSKDEKQQESKLFSELYNRHAQLMASQIGTDMALLPKRN
ELFVYNFCEIVLGRDFEYDSLYVVYSLDLPDGWYTEDYGSLTGVTHRCSM
NKNKMANFSYPFQFQLQYTWPEENPCEFIKWPTLFFEVYSLDSWQRHRIE
GYGYCQLPDIAGSTCFELDLWRPKGDSRDDEIRRFFIGGTPELEDTSYIK
DLHGTDEKVSKFFFKTVSTGTLVLRINTALQSKLDEKILNSTERFTKWKR
TIKRTGGFAAAVDSLTQVLDAFHRARRRMLSARSTLPVVT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002024	XLOC_002024	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003644	TCONS_00003644	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010796	B9_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 41..61
IPR010796	B9 domain	PFAM	PF07162	B9-C2	coord: 307..478 e-value: 2.1E-40 score: 138.6
IPR010796	B9 domain	PROSITE	PS51381	B9	coord: 302..426 score: 21.254

Blast

[Close]

BLAST of TCONS_00003644-protein vs. Swiss-Prot (Human)
Match: MKS1 (Meckel syndrome type 1 protein OS=Homo sapiens GN=MKS1 PE=1 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 6.931e-94
Identity = 190/548 (34.67%), Postives = 316/548 (57.66%), Query Frame = 0

Query:    9 YRSHDPPKNFAVRVTFWKVKPGSVIPTNRYQQNIELAEEAHELV---------DQYNKDEEKEEVVIHWQEKLFSSREFDHYNDPLNCISALEKKYHDDIQYIKSSQGDRPNQRIFTYIDSDTAAMLHEFSQ-VTLSENEHQNVLMDKMSQNRYTGSFKPQAKLNQQGLRRRNIITNDPTQA-MKSNRIISTPVKLMKIMVDVGSTNSNGVRIEDERVICTVKINANGLIVIQPDIE-MDEIYTLETYHETRSVYRYQIEHASDEMSKDEKQQESKLFSELYNRHAQLMASQIGTDMAL-LPKRNELFVYNFCEIVLGRDFEYDSLYVVYSLDLPDG-WYTEDYGSLTGVTHRC---SMNKNKMANFSYPFQFQLQYTWPEENPCEFIKWPTLFFEVYSLDSWQRHRIEGYGYCQLPDIAGSTCFELDLWRPKGDSRDDEIRRFFIGGTPELEDTSYIKDLHGT--DEKVSKFFFKTVSTGTLVLRINTALQSKLDEKILNSTERFTKWKRTIKRTGGFAAAVDSLTQVLDAFHRARRRMLSARSTLP 537
            YRS DP +N  +RV   ++   + +    YQ   EL ++  +L              +++E+EE+VI WQEKLFS  E D Y +   C S L+ +Y  +I  +++S G + N+RIFTY DSD    L E  Q +T + +E  + L+++M+        +   +  + G+ +  I+T +P++  +++N +I+TP++ M IM D+G     G + + E V+CT+K+++NG+I ++PD   +   Y +ET  E + +++Y I++ S     +E+++E ++F +LY RH + ++S +GTD  + +P    LFV    E+V  + +EYD+LYV + ++LP   W +  +  L+GVT  C   S+  +K+A+FSYPF F+  +   +E+     +WP L+ EV SLD WQR+R+EGYG   LP   GS    +  WRP       E+RRFFIGG+ ELED SY++ + G+   E++S+F  +T +TGT+  R++   QS+     + S+    + +  + R  GF+    S+  VL+AF RARRRM  AR +LP
Sbjct:   15 YRSRDPVRNLRLRVHLQRITSSNFL---HYQPAAELGKDLIDLATFRPQPTASGHRPEEDEEEEIVIGWQEKLFSQFEVDLYQNETACQSPLDYQYRQEILKLENSGGKK-NRRIFTYTDSDRYTNLEEHCQRMTTAASEVPSFLVERMAN---VRRRRQDRRGMEGGILKSRIVTWEPSEEFVRNNHVINTPLQTMHIMADLGPYKKLGYK-KYEHVLCTLKVDSNGVITVKPDFTGLKGPYRIETEGEKQELWKYTIDNVSPHAQPEEEERERRVFKDLYGRHKEYLSSLVGTDFEMTVPGALRLFVNG--EVVSAQGYEYDNLYVHFFVELPTAHWSSPAFQQLSGVTQTCTTKSLAMDKVAHFSYPFTFEAFFLHEDESSDALPEWPVLYCEVLSLDFWQRYRVEGYGAVVLPATPGSHTLTVSTWRPVELGTVAELRRFFIGGSLELEDLSYVR-IPGSFKGERLSRFGLRTETTGTVTFRLHCLQQSR---AFMESSSLQKRMRSVLDRLEGFSQQ-SSIHNVLEAFRRARRRMQEARESLP 547

The following BLAST results are available for this feature:

BLAST of TCONS_00003644-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003644-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MKS1	6.931e-94	34.67	Meckel syndrome type 1 protein OS=Homo sapiens GN=...	[more]

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TCONS_00003644-protein (polypeptide) - C. hemisphaerica