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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00003656-protein ID=TCONS_00003656-protein|Name=TCONS_00003656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1237bp
VKIVDSKMGDSEMDIPLIEQDARKGSAAARMLNNGVSFEDSLTEDERPVK
AKAGVSGPQANIMDQISKSIAMETGSKYRNYSSKRRIEKDKTDHYRKGPA
PIEESDAITKSTLKATYGTLDSDVEDLDFEEVRHQNSKNNYYNKLRLTTN
EKGDNLASCRALIVYFSKLAKSKDEEELIDLNFVESLLDNGADINFPDKH
GQTVLHEISRGWHPDVARFAIEHGADLNKCDSFGRTSLHLAAAVDYDDMV
QFLVDNGADLGAKTFGEEQTAMHYAAKNNAASSIKVMLRLGARINDRDYK
RRTPLFVAAETARTDAARFLIDRGAPAGVYDSSGTSCLSLMIEKMPQIAL
EAVEQFHLLDLAFRKHYYYLSYLEPDPAFMVEYIPESKKERKEQVERRKA
EKRLLKDSGQRVTKKEKSYAKTPLEVIVQYDQLDIIMHPVFQRLLHVKWN
LFGKRGSAKMLALNFLYTLIWTILGILIPRDHRYYTPFSDMWWRPVLEIS
GVSLTIYFIFMEISEVRSNEKKHNNWRQWRTRHMEKDLEYCHPRWPEEKQ
YLTSELLQIRGYQRTYFRDPWNIFEWISYLVVLTLVFTRVLSVASNNHTA
AEVHPKVYALGLIVLWLRFMRSCRVFQTLGPFIAILGSVVVDTAKFSFLL
FEFFVPYTVGFWIIFGGPENASKMTKNDWNQFNDLTFSVFSMTLMGGFDW
AGLVAVDRLMAQILCGSYFALAGVVCMNLYIALLSDTFARVYAQAKATAV
MQQAKTIIKLEGKLAKFYRSKYAHYFHKECSPQEVYTRDESQNIDEHENG
MLERVSRQIVNRIDSMEENVIGQHKKLQLYQQSNEGVLNAPPLDIVDNGD
GGNDDGFGGSGSLGGGGSSGDAGCRVLMNRFMEIQNHQYQDVKDEMDDIK
SMLNDIFSIIQGGSFQPPSGSQLALGGSQQPLLGIHPPAPQPSTHLLKSA
SLPRGSPHPPPIMRRRGSEPPAEISSLLKNIQDLVNIDPDQENNLTSKST
GNLPVLPSPVTEHPADVPYPMRTDQNPYPPGTLPPIDANNVYPPAHIPIG
QPPPAMNPYPPVSKSYPSLNKTAAYPPDTSMAAYPPGSGSNPPPSQKTSS
AIYPPLTNMDRKTSSNQEISKNRARSLRQQEANPQSNRTPPPSRFGRDSS
AQNTPALNRNTFNQEPNSDGSTASTLTLNTSQNNVEDNLNDYDTEIMYQN
SAPNTPGRNNGRRRRRKQHKKQSSMDGGIPMNYTETM Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 300..331
e-value: 1.6
score: 17.7
coord: 157..196
e-value: 1500.0
score: 3.7
coord: 233..262
e-value: 0.001
score: 28.4
coord: 267..296
e-value: 0.035
score: 23.2
coord: 200..229
e-value: 3.4
score: 16.6 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 267..299
score: 10.499 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 200..232
score: 9.938 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 233..265
score: 11.888 |
| IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 300..332
score: 9.671 |
| IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 182..263
e-value: 3.1E-11
score: 43.6
coord: 267..325
e-value: 3.5E-7
score: 30.6 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 170..241
e-value: 4.4E-19
score: 67.8 |
| IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 242..436
e-value: 5.0E-28
score: 97.2 |
| IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 180..338
score: 42.999 |
| IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 181..341 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 457..743
e-value: 8.6E-13
score: 47.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1069..1237 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 989..1009 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1044..1063 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 840..868 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 918..970 |
| None | No IPR available | CDD | cd00204 | ANK | coord: 195..321
e-value: 3.41899E-30
score: 116.714 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 555..745
e-value: 4.9E-15
score: 55.3 |
Blast
BLAST of TCONS_00003656-protein vs. Swiss-Prot (Human)
Match: ANR16 (Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.905e-18 Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 0
Query: 195 NFPDKHGQTVLHEISRGWHPDVARFAI-EHGADLNKCDSFGRTSLHLAAAVDYDDMVQFLVDN-GADLGAKTFGEEQTAMHYAAKNNAASSIKVMLRLGARINDRDYKRRTPLFVAAETARTDAARFLIDRG 324
++ D G T L + + H DVAR + EHGA L+ DS G +LH AA D+ ++FLV G D+ + TA+HYAAK S+I+ +L LGA IN +D K R+ L +A A+FL+ G
Sbjct: 199 DYRDNCGVTALMDAIQCGHIDVARLLLDEHGACLSAEDSLGAQALHRAAVTGQDEAIRFLVSELGVDVDVRATSTHLTALHYAAKEGHTSTIQTLLSLGADINSKDEKNRSALHLACAGQHLACAKFLLQSG 330
The following BLAST results are available for this feature:
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