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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003656 ID=TCONS_00003656|Name=TCONS_00003656|organism=Clytia hemisphaerica|type=transcript|length=4353bpRun BLAST on NCBI protein sequence of TCONS_00003656-protein >TCONS_00003656-protein ID=TCONS_00003656-protein|Name=TCONS_00003656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1237bp VKIVDSKMGDSEMDIPLIEQDARKGSAAARMLNNGVSFEDSLTEDERPVKRun BLAST on NCBI transcript from alignment at sc0000030:550783..577377- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003656 ID=TCONS_00003656|Name=TCONS_00003656|organism=Clytia hemisphaerica|type=transcript|length=26595bp|location=Sequence derived from alignment at sc0000030:550783..577377- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000030:550783..577377- >TCONS_00003656 ID=TCONS_00003656|Name=TCONS_00003656|organism=Clytia hemisphaerica|type=CDS|length=40854bp|location=Sequence derived from alignment at sc0000030:550783..577377- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003656 vs. Swiss-Prot (Human)
Match: ANR16 (Ankyrin repeat domain-containing protein 16 OS=Homo sapiens GN=ANKRD16 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.453e-17 Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 583 NFPDKHGQTVLHEISRGWHPDVARFAI-EHGADLNKCDSFGRTSLHLAAAVDYDDMVQFLVDN-GADLGAKTFGEEQTAMHYAAKNNAASSIKVMLRLGARINDRDYKRRTPLFVAAETARTDAARFLIDRG 972
++ D G T L + + H DVAR + EHGA L+ DS G +LH AA D+ ++FLV G D+ + TA+HYAAK S+I+ +L LGA IN +D K R+ L +A A+FL+ G
Sbjct: 199 DYRDNCGVTALMDAIQCGHIDVARLLLDEHGACLSAEDSLGAQALHRAAVTGQDEAIRFLVSELGVDVDVRATSTHLTALHYAAKEGHTSTIQTLLSLGADINSKDEKNRSALHLACAGQHLACAKFLLQSG 330 The following BLAST results are available for this feature:
BLAST of TCONS_00003656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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