TCONS_00003662-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003662-protein
Unique NameTCONS_00003662-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length217

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003662-protein ID=TCONS_00003662-protein|Name=TCONS_00003662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MANTEDVKAKFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEIHPL
KFYTNFGPIQFNCWDTAGQEKFGGLRDGYYIRGNCAIIMFDVTARITYKN
VPNWHKDLVRVCENIPIVLCGNKVDVKERKVKAKSITFHRKKNLQYYDIS
AKSNYNFEKPFLWLTRKLTGEAELEFVEMPALQPPEVQIDPLLQKQFEKD
LQEAQNCELPDDDGDDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002029XLOC_002029Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003662TCONS_00003662Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002041Ran_GTPase
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0006913nucleocytoplasmic transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007165 signal transduction
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002041Ran GTPasePRINTSPR00627GTPRANTC4coord: 71..89
score: 84.01
coord: 127..145
score: 79.35
coord: 165..187
score: 62.37
coord: 24..38
score: 95.13
coord: 91..112
score: 82.34
IPR002041Ran GTPasePROSITEPS51418RANcoord: 4..168
score: 30.229
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 8..171
e-value: 6.4E-12
score: 50.7
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 13..171
e-value: 2.4E-7
score: -24.2
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 16..217
e-value: 1.3E-154
score: 529.6
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 11..171
e-value: 3.5E-21
score: 86.4
NoneNo IPR availableGENE3D3.40.50.300coord: 75..169
e-value: 2.7E-21
score: 74.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..74
e-value: 2.1E-22
score: 78.4
NoneNo IPR availableCDDcd00877Rancoord: 11..176
e-value: 1.44317E-126
score: 356.611
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 10..159
e-value: 7.8E-23
score: 79.0
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 12..168
e-value: 3.2E-48
score: 163.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..200

Blast
[Close]
BLAST of TCONS_00003662-protein vs. Swiss-Prot (Human)
Match: RAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 365.925 bits (938), Expect = 1.507e-130
Identity = 170/215 (79.07%), Postives = 188/215 (87.44%), Query Frame = 0 
Query:    1 MANTEDVKAKFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEIHPLKFYTNFGPIQFNCWDTAGQEKFGGLRDGYYIRGNCAIIMFDVTARITYKNVPNWHKDLVRVCENIPIVLCGNKVDVKERKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLTRKLTGEAELEFVEMPALQPPEVQIDPLLQKQFEKDLQEAQNCELPDDDGD 215
            MA   + + +FKLVLVGDGGTGKTTFVKRHLTGEFEKKY+ATLGVE+HPL F+TN GPI+FN WDTAGQEKFGGLRDGYYI+  CAIIMFDVT+R+TYKNVPNWH+DLVRVCENIPIVLCGNKVD+K+RKVKAKSI FHRKKNLQYYDISAKSNYNFEKPFLWL RKL G+  LEFV MPAL PPEV +DP L  Q+E DL+ AQ   LPD+D D
Sbjct:    1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
The following BLAST results are available for this feature:
BLAST of TCONS_00003662-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAN1.507e-13079.07GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
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