TCONS_00003788-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003788-protein
Unique NameTCONS_00003788-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003788-protein ID=TCONS_00003788-protein|Name=TCONS_00003788-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp
MLFVGVMDIKGIFWGRTSRDICETPSGTVTDCYNSTLAVYQLENAKTFCN
NETQCKLKASFNFADKCNNIMWFDPCDGKSKYLDLNYTCTDTKAKTDYYS
SSPWSQWNAWSATCGAAQRSRERDCQNPPEKPCGCKNQELGAQRDTPDAR
SNSCPESTSIVPEMSSSSSISPSPSPSPSPSPSPSPSPSPSPSPSPSPSP
SPSPSLSPSPSLSPSPSSSSSPSPSPSPIPSPSMVDSSSSSIQPSSSPSS
KSSSHFELSPSRDMMSSTTFYEATESLNPSSSSQSAYTQLLSLSPSPMSS
SPIHEASSSAIVVVVPTTTGLPSFFVTASLTLIWEDFCKHSLEFRQGVAA
LLTKRLNKKQYADQVIIFNIDNCNNTNKDQKAVVKFYIAVNNSTATPSQS
LTVLAGELLAELIEDDETVVIGPNFGKGTFIIIKEKDDDDDLSAWLIILI
IIAAIIFLIWLCCCCAIFCRKRKREKNQPQPHRKYTFTPFNGYETPHVQL
RDNTEMASFSTNVIKLNVNGDTPSTPKSERSPDGIENPSYELDDVSNAPS
TFQPLKVTLMNPSDSEDEEDNKKPSTSSSSSSSDSEDEPKKQEDLPHPPT
PVNDNPYQPLTLQLNITDPQTGNTPGGGPSPYQPLSLQISPTSAPVTNSN
DPDKPPDYEEMLPKEPEEDTKSIKSNSSTDSDSSSSSSSSSSDNPLNDYD
NPDRPPTPPPTSTLPPRSPGVTRVFIGGKLVREIGQGDPNKAIHVKMTTT
M
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002109XLOC_002109Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003788TCONS_00003788Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000922Lectin_gal-bd_dom
IPR000884TSP1_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0030246 carbohydrate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000922D-galactoside/L-rhamnose binding SUEL lectin domainPFAMPF02140Gal_Lectincoord: 7..89
e-value: 4.5E-6
score: 26.9
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 100..162
e-value: 8.3E-5
score: 22.3
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 97..155
score: 8.79
NoneNo IPR availableGENE3D1.20.5.100coord: 435..477
e-value: 1.3E-4
score: 21.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 516..722
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..261

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003788-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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