TCONS_00003806-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003806-protein
Unique NameTCONS_00003806-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003806-protein ID=TCONS_00003806-protein|Name=TCONS_00003806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp
VLFFEEHFQNTLQNVRQRMRHINQQKCEFFRQKFEIKTKGVNVPLLSLGF
EECGFSQQLMENLKANDYLYPTSVQMQSIPIGLNYRDMLVSATTSSGKTA
CFLLPMVQIIQHFLASLPTIHPFRRDPLALILAPTRELCMQIEEQIKALC
QGIENIKTCLLVGGNPLPQQLYRLRHQIHFVIGTPGRINDVIDNHDGSLR
LRHIKMVVLDEVDVMLQMGFLNQIERILSDVPPSPQYMMFSATIPRSIEH
LAEQKMKNPIFVSVGQSGVTNSLVHQVILWVEDTSKRKKLFSVIREPKHF
HPPMLIFVESRLGADMLSEAIQEKIGITCDSLHSDKTQTERNVILQNFLT
GGYKVLVTTNVLGRGLDLPNVKQVIVFDMPKTIEDYIHQVGRAGRLHIQG
VVMTFINKSNKNLFRPLQELCEKTGTKLPEELLTSPLLQSAREKEKKLKN
EQAKETKKRKWDEEDLNKKSLLDILTKKVR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002120XLOC_002120Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003806TCONS_00003806Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 438..458
NoneNo IPR availableGENE3D3.40.50.300coord: 9..282
e-value: 1.6E-52
score: 177.7
NoneNo IPR availableGENE3D3.40.50.300coord: 283..477
e-value: 9.6E-40
score: 136.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 436..463
NoneNo IPR availableCDDcd00268DEADccoord: 50..263
e-value: 2.34266E-73
score: 231.605
NoneNo IPR availableCDDcd00079HELICccoord: 274..405
e-value: 6.19967E-32
score: 117.724
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 67..277
e-value: 1.0E-50
score: 184.5
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 79..262
score: 28.478
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 315..397
e-value: 2.6E-29
score: 113.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 298..396
e-value: 3.5E-24
score: 85.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 286..449
score: 20.896
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 72..250
e-value: 1.9E-44
score: 151.4
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 48..76
score: 9.234
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 126..415

Blast
[Close]
BLAST of TCONS_00003806-protein vs. Swiss-Prot (Human)
Match: DDX59 (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 2.100e-124
Identity = 204/458 (44.54%), Postives = 291/458 (63.54%), Query Frame = 0 
Query:   21 HINQQKCEFFRQKFEIKTKGVNVPLLSLGFEECGFSQQLMENLKANDYLYPTSVQMQSIPIGLNYRDMLVSATTSSGKTACFLLPMVQIIQHFLASLPTIHPFRRDPLALILAPTRELCMQIEEQIKALCQGIENIKTCLLVGGNPLPQQLYRLRHQIHFVIGTPGRINDVIDNHDGSLRLRHIKMVVLDEVDVMLQMGFLNQIERILSDVPPSPQYMMFSATIPRSIEHLAEQKMKNPIFVSVGQSGVTNSLVHQVILWVEDTSKRKKLFSVIREPKHFHPPMLIFVESRLGADMLSEAIQEKIGITCDSLHSDKTQTERNVILQNFLTGGYKVLVTTNVLGRGLDLPNVKQVIVFDMPKTIEDYIHQVGRAGRLHIQGVVMTFINKSNKNLFRPLQELCEKTGTKLPEELLTSPLLQSAREKEKKLKNEQAKETKKRKWDEEDL-NKKSLLDILTK 477
            ++ + + E  +Q+  I  +G  V    + FE C   + L  NLK + Y  PT +QMQ IP+GL  RD+L SA T SGKTA FLLP+  I++    S        + P ALIL PTREL +QIE Q K L  G+  +KT LLVGG PLP QLYRL+  +  +I TPGR+ D+I     S+ L  +K+VV+DE D ML+MGF  Q+  IL ++P   Q ++ SATIP SIE LA Q + NP+ +  G+  +  + V Q+ILWVED +K+KKLF ++ + K F PP+L+FV+ +LGAD+LSEA+Q+  G+   S+HS+K+Q ER  IL+  L G Y+V+V+T VLGRGLDL +V+ V+ FDMP ++++Y+HQ+GR GRL   G  +TFIN ++K LF  + +  + TG+ LP +LL SP L           +++ KE +K K  + DL    +L+DI+ K
Sbjct:  176 NLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV--IMRALFES--------KTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQ--SSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLH----------DQKRKEQQKDKQTQNDLVTGANLMDIIRK 611
The following BLAST results are available for this feature:
BLAST of TCONS_00003806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX592.100e-12444.54Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
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