TCONS_00003825-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003825-protein
Unique NameTCONS_00003825-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003825-protein ID=TCONS_00003825-protein|Name=TCONS_00003825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=929bp
LHFNTMSIMHMKSESKSRHRDDKKKKKRQYRSKKHARDSSSDQDEDVDVV
MSSQSSDDSPDERPRSKKNGRGRLPDGDSSPEEKQKSSSKSKRKSRKESF
SESEDEEEDTRRGRRAEKKKKKSRKTNRKRRHESSDSEAEQSDDSSISPS
PRSKKRDRSPAALKDKKKLKSRSPSRKKHIERSVSRSPPRKSKKSAKVRS
VSPVEKRKKSRKEKSASPVVLHKKSKLLREESESPPPVSSRKKKKDESRD
VKRRRRDSNSPPRRQRKDSEEERIEKFQITEKKLSTKSPSPPPPPPKVNI
KVEPLKPKIKSPPIEKAPLPPKDSAPLPTLPPKHQEPPAPPKQLPALSKG
KRLPPKETPTLPIETPTPPKDTPEPPAPQKEGPKAPAPPPEPDTKQSQED
EIERLLAKAKAKREEQRQKEREVGARLKESMKKVDSVDEKEKKTSTEIVF
KKSKRKESASSLSASSNKEEKTSSSSKSSSYREHQSSSSSSSRKFSSDHS
SRDKDTRESRDKDTRESRDKDTRESRDKDTRELRDKDTRESRDRGKDRDS
RDSRDRSRKLHESSSSSSSSSSFSKKRDSEKKDDSKSRSSDTNSSKKESA
SANILDPEEEMRKRKERIEAWRNARKGGDGKSATTDAAEPEPPTPKKKSL
GKWDQKPVEEEKPKPKVKVVVATKKKTIWNLEDDDDEQADKTKTQKGRKP
LTSRITAEKKKSPEKPAAEDDEEIDPLDAFMMTIDKEVNKSKAKAVINPN
AGGKTVTVVKTVVKKEEPEKLNKPEVMEQNQDALEYSSEEETPADVTASD
FTEVKQKQRKELTVDHSRIYYAAFRRNFYVEVPELARLTADEVKIHRDSL
DIQIRGKNVPKPIRTWAQAGLSSKVMTVLKKCNYEKPTHIQSQAIPAIMS
GRDMIGIAKTGSGKTLAFLLPMLRHVLDQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002134XLOC_002134Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003825TCONS_00003825Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 395..422
NoneNo IPR availableGENE3D3.40.50.300coord: 850..929
e-value: 1.3E-16
score: 60.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..726
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 888..927
e-value: 2.4E-11
score: 43.6
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 864..892
score: 10.361
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 808..927

Blast
[Close]
BLAST of TCONS_00003825-protein vs. Swiss-Prot (Human)
Match: DDX46 (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 4.648e-57
Identity = 143/341 (41.94%), Postives = 187/341 (54.84%), Query Frame = 0 
Query:  608 EEEMRKRKERIEAWRNARKGGDGKSATTDAAEPEPPTPKKKSLGKWDQKPVEEEKPKPKVKVVVATKKKTIWNLEDDDDEQADKTKTQKGRKPLTSRITAEKKKSPEKPAAEDDEEIDPLDAFMMTIDKEVNKSKAKAVINPNAGGKTVTVVKTVVKKEEPEKLN-----------------KPEVMEQNQDALEYSSEEETPADVTASDFTEVKQKQRKELT-VDHSRIYYAAFRRNFYVEVPELARLTADEVKIHRDSLD-IQIRGKNVPKPIRTWAQAGLSSKVMTVLKKCNYEKPTHIQSQAIPAIMSGRDMIGIAKTGSGKTLAFLLPMLRHVLDQ 929
            EEEMRKRKER+E WR  ++    K A  +  E               +K +EE K   K            W+LEDDDD++ D  + +K    +                  + EE+DPLDA+M  + +EV K   ++V     GG          KK  P                     K E+ME +QDA+EYSSEEE     TA   T  + KQRK L  VDH +I Y  FR+NFYVEVPELA+++ +EV + R  ++ I ++GK  PKPI++W Q G+S K++  LKK  YEKPT IQ+QAIPAIMSGRD+IGIAKTGSGKT+AFLLPM RH++DQ
Sbjct:  157 EEEMRKRKERVEKWREEQR----KKAMENIGEL--------------KKEIEEMKQGKK------------WSLEDDDDDEDDPAEAEKEGNEM------------------EGEELDPLDAYMEEVKEEVKKFNMRSV--KGGGGNE--------KKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTA--LTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQ 437
The following BLAST results are available for this feature:
BLAST of TCONS_00003825-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX464.648e-5741.94Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]
back to top