TCONS_00003895-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003895-protein
Unique NameTCONS_00003895-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003895-protein ID=TCONS_00003895-protein|Name=TCONS_00003895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MADQVAEGSVSKEVENNTKDAEMPKEESTEEPASKFTCNGEPIKFKMVWN
KSNYEMTKLGKSNTVADLREYIAELTGIPTNMQKIMFKGLVKDDAKTLEE
IKLTSGSKVMVVGSTVKDIEKVKTPTTQELKAQAQSEAAASKEALCKQKQ
HKKVLDKGKPDDVPVGVKGRKEPLPQVPLSGMVNKTGGRVRLTFKLELDQ
LWLGTKERTEKLPMSSIRNVVSEPIEGQEEYHILAIQLGPTEASRYWIYW
FPAQYVDSVKDTILGKWQVF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002183XLOC_002183Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003895TCONS_00003895Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 43..114
e-value: 4.8E-10
score: 49.4
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 43..114
e-value: 2.0E-11
score: 43.3
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 62..112
score: 14.469
NoneNo IPR availableGENE3D3.10.20.90coord: 37..153
e-value: 4.4E-13
score: 48.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..176
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 39..126

Blast
[Close]
BLAST of TCONS_00003895-protein vs. Swiss-Prot (Human)
Match: UBFD1 (Ubiquitin domain-containing protein UBFD1 OS=Homo sapiens GN=UBFD1 PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 3.366e-100
Identity = 144/233 (61.80%), Postives = 182/233 (78.11%), Query Frame = 0 
Query:   41 EPIKFKMVWNKSNYEMTKLGKSNTVADLREYIAELTGIPTNMQKIMFKGLVKDDAKTLEEIKLTSGSKVMVVGSTVKDIEKVKTPTTQELKAQAQSEAAAS---KEALCKQKQHKKVLDKGKPDDVPVGVKGRKEPLPQVPLSGMVNKTGGRVRLTFKLELDQLWLGTKERTEKLPMSSIRNVVSEPIEGQEEYHILAIQLGPTEASRYWIYWFPAQYVDSVKDTILGKWQVF 270
            E +  K++WNK+ +++ K    +T ++L++ I  +TG+P  MQK+M+KGLV +D KTL EIK+TSG+K+MVVGST+ D+  V TP     K  AQ +A A    KE LC+QKQH+KVLDKGKP+DV   VKG +E LP VPLSGM NK+GG+VRLTFKLE DQLW+GTKERTEKLPM SI+NVVSEPIEG E+YH++A QLGPTEAS YW+YW P QYVD++KDT+LGKWQ F
Sbjct:   84 ELVDLKIIWNKTKHDV-KFPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGSTINDVLAVNTP-----KDAAQQDAKAEENKKEPLCRQKQHRKVLDKGKPEDVMPSVKGAQERLPTVPLSGMYNKSGGKVRLTFKLEQDQLWIGTKERTEKLPMGSIKNVVSEPIEGHEDYHMMAFQLGPTEASYYWVYWVPTQYVDAIKDTVLGKWQYF 309
The following BLAST results are available for this feature:
BLAST of TCONS_00003895-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBFD13.366e-10061.80Ubiquitin domain-containing protein UBFD1 OS=Homo ... [more]
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