TCONS_00003937-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003937-protein
Unique NameTCONS_00003937-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003937-protein ID=TCONS_00003937-protein|Name=TCONS_00003937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp
MTDVMTPFNHNHEEALHDENENNFALHLKPVFDACDYNGDGFVKIHDLIE
LGKQHSVGNSGEELELILRQLDGSGNGRISFDEFCFKVQQIFQQANDVEP
SPRDRVNSLEVKLPLKNKDPAAPVPEILEQIPEKPNDEARGRSFTDSEGF
FEEIDTLSHSTASTYDFDEPRYSSPMKNGKFIAPPNSYFAQMKRNTNIYS
TYPPNGKLPKKERKNIYNLQHRQLSRTSEYQSTEEGFEAFGEGDWDGSVT
SEPQFESGSLLSPNTLSRRLSGNHHASRLVQSARTSLHGSMEEMKHVNGH
RHSYSDGGGEGDFGLLSEEIKKLSSQLTIMKMDQDDHDDKQKRMREENRM
LMNKINALEEQLHDQKNHSQVTVQEESQKYRKELQKVQRDHTENIDRLQI
KLEEAEGHIENLKSVEPMLRKEIENSLEERRLAQQKIENLQAELIEKEKE
IEHYKYKLKVKTDDLEREQHERVEEVMILTHEIENLKYMKNAAISQYDEH
EDLLKQMEIIKKENNNLRTAQDDLRNQMFEQNTKIEMEKTHTLADELQTA
DKTDVLDALRAEENENHRLKQYVDQLLILIMQSDPMLLEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002200XLOC_002200Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003937TCONS_00003937Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR019018Rab-bd_FIP-RBD
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 341..368
NoneNo IPR availableCOILSCoilCoilcoord: 500..530
NoneNo IPR availableCOILSCoilCoilcoord: 423..457
NoneNo IPR availableCOILSCoilCoilcoord: 370..415
NoneNo IPR availableGENE3D1.10.238.10coord: 27..71
e-value: 2.3E-9
score: 36.6
NoneNo IPR availableGENE3D1.10.238.10coord: 72..102
e-value: 0.14
score: 11.6
NoneNo IPR availableGENE3D1.20.1170.10coord: 229..580
e-value: 4.3E-7
score: 28.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..288
NoneNo IPR availableSUPERFAMILY144270Eferin C-derminal domain-likecoord: 540..589
IPR002048EF-hand domainSMARTSM00054efh_1coord: 27..55
e-value: 6.7
score: 11.1
coord: 63..91
e-value: 0.098
score: 21.8
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 28..86
e-value: 2.7E-8
score: 34.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 31..58
score: 5.81
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 59..94
score: 10.329
IPR002048EF-hand domainCDDcd00051EFhcoord: 27..85
e-value: 2.4003E-7
score: 47.1573
IPR019018Rab-binding domain FIP-RBDPFAMPF09457RBD-FIPcoord: 553..589
e-value: 1.4E-7
score: 31.2
IPR019018Rab-binding domain FIP-RBDPROSITEPS51511FIP_RBDcoord: 529..590
score: 11.744
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 72..84
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 27..94

Blast
[Close]
BLAST of TCONS_00003937-protein vs. Swiss-Prot (Human)
Match: RFIP3 (Rab11 family-interacting protein 3 OS=Homo sapiens GN=RAB11FIP3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.319e-27
Identity = 142/595 (23.87%), Postives = 273/595 (45.88%), Query Frame = 0 
Query:   28 LKPVFDACDYNGDGFVKIHDLIELGKQHSVGNSGEELELILRQLDGSGNGRISFDEFCFKVQQIFQQANDVEPSPRDRVNSLEVKLPLKNKDPAAPVPEILEQIPEKPNDEARGRSFTDSEGFFEEIDTLSHSTASTYDFDEPRYSSPMKNGKFIAPPNSYFAQMKRNTNIYSTYPPNGKLPKKERKNIYNLQHRQLSRTSEYQSTEEGFEAFGEGD---------WDGSV-TSEPQFESGSLLSPNTLSRRLSGNHHASRLVQSARTSLHG----SMEEMKHVNGHRHSYSDGGGEGDFGLLSEEIKKLSSQLTIMKMDQDDHDDKQKRMREENRMLMNKINALEEQLHDQKNHSQVTVQEESQKYRKELQKVQRDHTENIDRLQIKLEEAEGHIENLKSVEPMLRKEIENSLEERRLAQQKIENLQAELIEKEKEIEHYKYKLKVKTDDLEREQHERVEEVMILTHEIENLKYMK-----------NAAISQY---DEHEDLLKQMEIIKKENNNLRTAQDDLRNQMFE---QNTK--IEMEKTHTLADELQTADKTDVLDALRAEENENHRLKQYVDQLLILIMQSDPMLLE 589
            L+ VFDA D +GDGFV+I D I+    +      E+++ + + LD SG G ISF++F   +  I  +  D +      V S + + PL         P+  +       +E    ++  SE  + E +T +    ST    E +      +    A P+     M+         P +G L       +    H            EE FE +GEG           +G +  S+P F     L+P+  ++RLS    A  L QS   ++      S E M+            G E D   +++++  L  ++  ++ D     ++  R+R+EN  L+++ NALEEQL +Q+  +   V EE+++ ++ L K++R+ +  I+ LQ +L++ +     L+S  P L+  IE   EE++    +IE+L   L E+++       +L  +    +R++    E +  L  ++E+L+ +K           +  + +Y       +L +++  +K++N NL+   ++L  Q+     Q  K       + +LA E+ +  + ++++A++ +E  N RL+ Y+D++++ IM+++P +LE
Sbjct:  207 LRAVFDALDGDGDGFVRIEDFIQFATVYGA----EQVKDLTKYLDPSGLGVISFEDFYQGITAI--RNGDPDGQCYGGVASAQDEEPLA-------CPDEFDDFVTYEANEVTDSAYMGSESTYSECETFTDEDTSTLVHPELQPEGDADSAGGSAVPSECLDAMEE--------PDHGAL-----LLLPGRPHPHGQSVITVIGGEEHFEDYGEGSEAELSPETLCNGQLGCSDPAF-----LTPSP-TKRLSSKKVARYLHQSGALTMEALEDPSPELME------------GPEED---IADKVVFLERRVLELEKDTAATGEQHSRLRQENLQLVHRANALEEQLKEQELRACEMVLEETRRQKELLCKMEREKSIEIENLQTRLQQLDEENSELRSCTPCLKANIERLEEEKQKLLDEIESLTLRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRRGRSSSMGLQEYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAFSESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRIIVAIMETNPSILE 754
The following BLAST results are available for this feature:
BLAST of TCONS_00003937-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RFIP31.319e-2723.87Rab11 family-interacting protein 3 OS=Homo sapiens... [more]
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